Gcaud2609.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2609.t1
Unique NameGcaud2609.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_972_length_15628_cov_3.908026contigNODE_972_length_15628_cov_3.908026:65..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2609Gcaud2609Gracilaria caudata M_176_S67 malegeneNODE_972_length_15628_cov_3.908026 65..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2609.t1.CDS1Gcaud2609.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_972_length_15628_cov_3.908026 65..441 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2609.t1.exon1Gcaud2609.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_972_length_15628_cov_3.908026 65..441 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2609.t1.stop1Gcaud2609.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_972_length_15628_cov_3.908026 439..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2609.t1Gcaud2609.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_972_length_15628_cov_3.908026 65..441 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2609.t1 ID=Gcaud2609.t1|Name=Gcaud2609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=126bp
XDLEYLDPNIRSMLYGYAAFEVSDRAVGRRIAEDRKEELLKRYKENKGKT
CRGSGVCAIRLACQELNLPAEASHMDGLPAFCAGWASEFMERKPGNQTPE
HGLDHDEVEARFGSSNAWRYPHTQT*
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spliced messenger RNA

>Gcaud2609.t1 ID=Gcaud2609.t1|Name=Gcaud2609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:65..441+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
aTGACCTAGAGTATCTGGACCCCAACATAAGGTCCATGTTGTACGGGTAC
GCAGCGTTTGAAGTGAGTGATCGCGCGGTGGGAAGACGTATTGCCGAGGA
TCGAAAGGAAGAACTTTTGAAGCGATACAAGGAGAATAAGGGCAAGACCT
GTCGGGGAAGCGGCGTGTGTGCGATTCGATTGGCGTGTCAGGAGCTCAAT
TTGCCGGCGGAGGCGAGTCACATGGATGGTTTACCGGCGTTTTGTGCGGG
TTGGGCGAGCGAGTTTATGGAGAGGAAACCGGGTAATCAGACGCCGGAGC
ACGGACTTGATCACGATGAAGTGGAGGCCCGCTTTGGAAGCAGCAACGCT
TGGCGCTATCCGCACACGCAGACTTGA
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protein sequence of Gcaud2609.t1

>Gcaud2609.t1 ID=Gcaud2609.t1|Name=Gcaud2609.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=126bp
XDLEYLDPNIRSMLYGYAAFEVSDRAVGRRIAEDRKEELLKRYKENKGKT
CRGSGVCAIRLACQELNLPAEASHMDGLPAFCAGWASEFMERKPGNQTPE
HGLDHDEVEARFGSSNAWRYPHTQT*
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mRNA from alignment at NODE_972_length_15628_cov_3.908026:65..441+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2609.t1 ID=Gcaud2609.t1|Name=Gcaud2609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:65..441+ (Gracilaria caudata M_176_S67 male)
aTGACCTAGAGTATCTGGACCCCAACATAAGGTCCATGTTGTACGGGTAC
GCAGCGTTTGAAGTGAGTGATCGCGCGGTGGGAAGACGTATTGCCGAGGA
TCGAAAGGAAGAACTTTTGAAGCGATACAAGGAGAATAAGGGCAAGACCT
GTCGGGGAAGCGGCGTGTGTGCGATTCGATTGGCGTGTCAGGAGCTCAAT
TTGCCGGCGGAGGCGAGTCACATGGATGGTTTACCGGCGTTTTGTGCGGG
TTGGGCGAGCGAGTTTATGGAGAGGAAACCGGGTAATCAGACGCCGGAGC
ACGGACTTGATCACGATGAAGTGGAGGCCCGCTTTGGAAGCAGCAACGCT
TGGCGCTATCCGCACACGCAGACTTGA
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Coding sequence (CDS) from alignment at NODE_972_length_15628_cov_3.908026:65..441+

>Gcaud2609.t1 ID=Gcaud2609.t1|Name=Gcaud2609.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=377bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:65..441+ (Gracilaria caudata M_176_S67 male)
aTGACCTAGAGTATCTGGACCCCAACATAAGGTCCATGTTGTACGGGTAC
GCAGCGTTTGAAGTGAGTGATCGCGCGGTGGGAAGACGTATTGCCGAGGA
TCGAAAGGAAGAACTTTTGAAGCGATACAAGGAGAATAAGGGCAAGACCT
GTCGGGGAAGCGGCGTGTGTGCGATTCGATTGGCGTGTCAGGAGCTCAAT
TTGCCGGCGGAGGCGAGTCACATGGATGGTTTACCGGCGTTTTGTGCGGG
TTGGGCGAGCGAGTTTATGGAGAGGAAACCGGGTAATCAGACGCCGGAGC
ACGGACTTGATCACGATGAAGTGGAGGCCCGCTTTGGAAGCAGCAACGCT
TGGCGCTATCCGCACACGCAGACTTGA
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