Gcaud2553.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2553.t2
Unique Name	Gcaud2553.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1552_length_9789_cov_4.214168	contig	NODE_1552_length_9789_cov_4.214168:3625..4355 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2553	Gcaud2553	Gracilaria caudata M_176_S67 male	gene	NODE_1552_length_9789_cov_4.214168 3625..5987 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t2	Gcaud2553.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1552_length_9789_cov_4.214168 3625..4355 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t2.stop1	Gcaud2553.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1552_length_9789_cov_4.214168 3625..3627 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t2.CDS1	Gcaud2553.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 3625..3632 -
Gcaud2553.t2.CDS2	Gcaud2553.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 3710..4355 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t2.exon1	Gcaud2553.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 3625..3632 -
Gcaud2553.t2.exon2	Gcaud2553.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 3710..4355 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t2.intron1	Gcaud2553.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1552_length_9789_cov_4.214168 3633..3709 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t2.start1	Gcaud2553.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1552_length_9789_cov_4.214168 4353..4355 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1552_length_9789_cov_4.214168:3625..4355-
coding sequence from alignment at NODE_1552_length_9789_cov_4.214168:3625..4355-

mRNA sequence

>Gcaud2553.t2 ID=Gcaud2553.t2|Name=Gcaud2553.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=218bp
MKEGVLFDGVIHAASAAGLSGGGNRMFGEASELLIGGARMCASVLTGLDE
ASLQRETRRSRSGYESIIHARGPAFCVKKRLCEQPIEEKMVGKWTGDKVA
EERDDVHGGEIEAEIAKALHDKEAAINTNGESKEAGVAQKGDGTSADGND
KQVDRDVDMAGGADGCQNGDDDMDRADVDTMGKRQGGIPDKEGDTRENDS
VGGARDTPEGEHARDDS*

spliced messenger RNA

>Gcaud2553.t2 ID=Gcaud2553.t2|Name=Gcaud2553.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=654bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:3625..4355- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGAGGGAGTGCTGTTTGACGGTGTGATACATGCAGCAAGTGCGGC
TGGGTTGAGTGGCGGTGGTAATCGAATGTTTGGGGAAGCTAGCGAGCTGT
TGATTGGTGGGGCGAGAATGTGTGCTAGTGTTCTGACTGGACTTGACGAA
GCAAGCTTACAACGAGAGACTAGGAGAAGTCGGAGCGGCTACGAGAGCAT
TATTCACGCTCGAGGACCAGCGTTCTGCGTGAAAAAAAGGTTATGTGAGC
AACCTATTGAAGAGAAGATGGTGGGGAAATGGACGGGAGACAAGGTGGCA
GAGGAGAGGGACGACGTGCACGGAGGGGAGATCGAAGCGGAGATTGCGAA
AGCTTTGCACGACAAGGAAGCTGCGATTAATACAAATGGCGAGAGTAAGG
AGGCGGGTGTGGCGCAGAAAGGGGACGGAACAAGTGCGGATGGAAATGAC
AAACAGGTGGACAGAGATGTGGACATGGCAGGCGGCGCAGACGGCTGCCA
AAACGGTGATGATGACATGGACAGAGCGGATGTCGATACGATGGGCAAGC
GCCAAGGCGGTATTCCTGACAAAGAAGGTGACACGCGCGAAAATGATTCG
GTTGGAGGTGCTCGAGACACGCCCGAGGGGGAGCACGCGCGAGACGACTC
ATGA

protein sequence of Gcaud2553.t2

>Gcaud2553.t2 ID=Gcaud2553.t2|Name=Gcaud2553.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=218bp
MKEGVLFDGVIHAASAAGLSGGGNRMFGEASELLIGGARMCASVLTGLDE
ASLQRETRRSRSGYESIIHARGPAFCVKKRLCEQPIEEKMVGKWTGDKVA
EERDDVHGGEIEAEIAKALHDKEAAINTNGESKEAGVAQKGDGTSADGND
KQVDRDVDMAGGADGCQNGDDDMDRADVDTMGKRQGGIPDKEGDTRENDS
VGGARDTPEGEHARDDS*

mRNA from alignment at NODE_1552_length_9789_cov_4.214168:3625..4355-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2553.t2 ID=Gcaud2553.t2|Name=Gcaud2553.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=731bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:3625..4355- (Gracilaria caudata M_176_S67 male)
ATGAAGGAGGGAGTGCTGTTTGACGGTGTGATACATGCAGCAAGTGCGGC
TGGGTTGAGTGGCGGTGGTAATCGAATGTTTGGGGAAGCTAGCGAGCTGT
TGATTGGTGGGGCGAGAATGTGTGCTAGTGTTCTGACTGGACTTGACGAA
GCAAGCTTACAACGAGAGACTAGGAGAAGTCGGAGCGGCTACGAGAGCAT
TATTCACGCTCGAGGACCAGCGTTCTGCGTGAAAAAAAGGTTATGTGAGC
AACCTATTGAAGAGAAGATGGTGGGGAAATGGACGGGAGACAAGGTGGCA
GAGGAGAGGGACGACGTGCACGGAGGGGAGATCGAAGCGGAGATTGCGAA
AGCTTTGCACGACAAGGAAGCTGCGATTAATACAAATGGCGAGAGTAAGG
AGGCGGGTGTGGCGCAGAAAGGGGACGGAACAAGTGCGGATGGAAATGAC
AAACAGGTGGACAGAGATGTGGACATGGCAGGCGGCGCAGACGGCTGCCA
AAACGGTGATGATGACATGGACAGAGCGGATGTCGATACGATGGGCAAGC
GCCAAGGCGGTATTCCTGACAAAGAAGGTGACACGCGCGAAAATGATTCG
GTTGGAGGTGCTCGAGACACGCCCGAGGGGGAGCACGCGCGAGACGGTGC
GAGCGCGGCAGTTGGTTGCGCCACCGCGGATGGGAAGCGTGTGGAGAATA
ACGCGATAGATTTACACGAAGAGACTCATGA

Coding sequence (CDS) from alignment at NODE_1552_length_9789_cov_4.214168:3625..4355-

>Gcaud2553.t2 ID=Gcaud2553.t2|Name=Gcaud2553.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=654bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:3625..4355- (Gracilaria caudata M_176_S67 male)
ATGAAGGAGGGAGTGCTGTTTGACGGTGTGATACATGCAGCAAGTGCGGC
TGGGTTGAGTGGCGGTGGTAATCGAATGTTTGGGGAAGCTAGCGAGCTGT
TGATTGGTGGGGCGAGAATGTGTGCTAGTGTTCTGACTGGACTTGACGAA
GCAAGCTTACAACGAGAGACTAGGAGAAGTCGGAGCGGCTACGAGAGCAT
TATTCACGCTCGAGGACCAGCGTTCTGCGTGAAAAAAAGGTTATGTGAGC
AACCTATTGAAGAGAAGATGGTGGGGAAATGGACGGGAGACAAGGTGGCA
GAGGAGAGGGACGACGTGCACGGAGGGGAGATCGAAGCGGAGATTGCGAA
AGCTTTGCACGACAAGGAAGCTGCGATTAATACAAATGGCGAGAGTAAGG
AGGCGGGTGTGGCGCAGAAAGGGGACGGAACAAGTGCGGATGGAAATGAC
AAACAGGTGGACAGAGATGTGGACATGGCAGGCGGCGCAGACGGCTGCCA
AAACGGTGATGATGACATGGACAGAGCGGATGTCGATACGATGGGCAAGC
GCCAAGGCGGTATTCCTGACAAAGAAGGTGACACGCGCGAAAATGATTCG
GTTGGAGGTGCTCGAGACACGCCCGAGGGGGAGCACGCGCGAGACGACTC
ATGA