Gcaud255.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud255.t1
Unique Name	Gcaud255.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_426_length_25926_cov_5.837081	contig	NODE_426_length_25926_cov_5.837081:10194..11369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud255	Gcaud255	Gracilaria caudata M_176_S67 male	gene	NODE_426_length_25926_cov_5.837081 10194..11369 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud255.t1.start1	Gcaud255.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_426_length_25926_cov_5.837081 10194..10196 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud255.t1.CDS1	Gcaud255.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_426_length_25926_cov_5.837081 10194..11369 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud255.t1.exon1	Gcaud255.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_426_length_25926_cov_5.837081 10194..11369 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud255.t1.stop1	Gcaud255.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_426_length_25926_cov_5.837081 11367..11369 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud255.t1	Gcaud255.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_426_length_25926_cov_5.837081 10194..11369 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_426_length_25926_cov_5.837081:10194..11369+
coding sequence from alignment at NODE_426_length_25926_cov_5.837081:10194..11369+

mRNA sequence

>Gcaud255.t1 ID=Gcaud255.t1|Name=Gcaud255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=392bp
MDFHISCFPRDLLQRIFQIGLKEVWGLSNPEVEELEDDSDEEEDLDPFRV
EKRNQNGYPDRFKPDYDPFRAHPELLTLIDCTQVCTAWADAIIDKEYWDS
LSPESYGRALAEPWKVGKRWNRLLNYVPVPILCVNEELLSNIGKIHISIL
RGRDAFEVYVVSNSDQKEHILEAWFNLQPFLQTRCVRLTITNPIVATGRD
RFNRTRVDFLPLMLTKWPLLQSLDIDTSAIEVFTRETFKDRQDNFKPVLS
SDPPFPALKRLCLTTHVDTQAAQAITLLAPHIEDCRIEFSGHKGYDLINY
ERSRTSGVYLQFLRHDKCFRVYILPFCLLAFKWPGPKTLRDYKEVWGVHL
LTLFPKGIVLISERRDRKICELHLTASQCFEVEDLRFLSIP*

spliced messenger RNA

>Gcaud255.t1 ID=Gcaud255.t1|Name=Gcaud255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:10194..11369+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTCCACATATCCTGCTTCCCGAGAGACCTGCTTCAGCGCATCTT
CCAGATTGGCCTAAAAGAGGTTTGGGGCTTGTCAAACCCGGAAGTAGAAG
AGCTTGAGGACGACTCCGATGAAGAAGAAGATCTTGATCCGTTTCGCGTC
GAAAAGAGAAATCAGAATGGCTATCCCGATCGCTTCAAGCCGGACTACGA
TCCCTTTCGAGCACACCCGGAACTTTTGACGTTGATAGACTGCACGCAAG
TGTGTACGGCCTGGGCTGACGCCATTATCGACAAGGAATACTGGGATTCA
CTCTCTCCAGAGTCGTACGGGAGAgcgctagccgagccttggaaggtggg
aaagagatggaatcgattgttgaactatgtgccggtacccatcctgtgtg
tgaatgaagaactgctttccaatatcggaaagattcacatatccattctc
cgaggACGCGATGCGTTTGAGGTTTACGTTGTGTCTAATAGCGATCAAAA
GGAGCACATTCTCGAAGCCTGGTTCAACTTGCAACCCTTTCTGCAGACGA
GATGTGTGCGTCTTACCATCACGAATCCAATTGTCGCAACTGGCCGTGAC
AGATTCAACCGCACACGCGTCGATTTTCTACCGTTGATGCTGACCAAGTG
GCCTTTGCTGCAGTCATTGGACATTGACACCTCTGCGATTGAAGTTTTCA
CTCGTGAAACCTTCAAGGACAGGCAGGACAATTTCAAGCCCGTTTTGAGC
TCTGATCCACCGTTCCCTGCTCTGAAACGACTATGTCTCACCACGCATGT
GGACACACAAGCGGCGCAAGCCATCACTCTGTTAGCTCCTCATATCGAGG
ATTGTCGCATCGAATTTTCCGGCCACAAGGGCTATGATTTGATCAATTAT
GAAAGGTCACGAACGAGCGGTGTTTATTTGCAGTTTCTTCGGCATGACAA
GTGCTTTAGGGTGTATATACTTCCGTTCTGCTTACTTGCGTTTAAATGGC
CTGGACCAAAAACCTTGCGCGATTACAAGGAAGTATGGGGAGTTCACCTT
TTGACACTATTTCCGAAGGGTATCGTTCTGATTTCGGAAAGAAGGGATAG
GAAGATATGTGAACTTCATCTGACTGCCTCCCAGTGTTTTGAAGTTGAAG
ATCTTAGATTCCTGTCGATTCCCTGA

protein sequence of Gcaud255.t1

>Gcaud255.t1 ID=Gcaud255.t1|Name=Gcaud255.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=392bp
MDFHISCFPRDLLQRIFQIGLKEVWGLSNPEVEELEDDSDEEEDLDPFRV
EKRNQNGYPDRFKPDYDPFRAHPELLTLIDCTQVCTAWADAIIDKEYWDS
LSPESYGRALAEPWKVGKRWNRLLNYVPVPILCVNEELLSNIGKIHISIL
RGRDAFEVYVVSNSDQKEHILEAWFNLQPFLQTRCVRLTITNPIVATGRD
RFNRTRVDFLPLMLTKWPLLQSLDIDTSAIEVFTRETFKDRQDNFKPVLS
SDPPFPALKRLCLTTHVDTQAAQAITLLAPHIEDCRIEFSGHKGYDLINY
ERSRTSGVYLQFLRHDKCFRVYILPFCLLAFKWPGPKTLRDYKEVWGVHL
LTLFPKGIVLISERRDRKICELHLTASQCFEVEDLRFLSIP*

mRNA from alignment at NODE_426_length_25926_cov_5.837081:10194..11369+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud255.t1 ID=Gcaud255.t1|Name=Gcaud255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:10194..11369+ (Gracilaria caudata M_176_S67 male)
ATGGATTTCCACATATCCTGCTTCCCGAGAGACCTGCTTCAGCGCATCTT
CCAGATTGGCCTAAAAGAGGTTTGGGGCTTGTCAAACCCGGAAGTAGAAG
AGCTTGAGGACGACTCCGATGAAGAAGAAGATCTTGATCCGTTTCGCGTC
GAAAAGAGAAATCAGAATGGCTATCCCGATCGCTTCAAGCCGGACTACGA
TCCCTTTCGAGCACACCCGGAACTTTTGACGTTGATAGACTGCACGCAAG
TGTGTACGGCCTGGGCTGACGCCATTATCGACAAGGAATACTGGGATTCA
CTCTCTCCAGAGTCGTACGGGAGAgcgctagccgagccttggaaggtggg
aaagagatggaatcgattgttgaactatgtgccggtacccatcctgtgtg
tgaatgaagaactgctttccaatatcggaaagattcacatatccattctc
cgaggACGCGATGCGTTTGAGGTTTACGTTGTGTCTAATAGCGATCAAAA
GGAGCACATTCTCGAAGCCTGGTTCAACTTGCAACCCTTTCTGCAGACGA
GATGTGTGCGTCTTACCATCACGAATCCAATTGTCGCAACTGGCCGTGAC
AGATTCAACCGCACACGCGTCGATTTTCTACCGTTGATGCTGACCAAGTG
GCCTTTGCTGCAGTCATTGGACATTGACACCTCTGCGATTGAAGTTTTCA
CTCGTGAAACCTTCAAGGACAGGCAGGACAATTTCAAGCCCGTTTTGAGC
TCTGATCCACCGTTCCCTGCTCTGAAACGACTATGTCTCACCACGCATGT
GGACACACAAGCGGCGCAAGCCATCACTCTGTTAGCTCCTCATATCGAGG
ATTGTCGCATCGAATTTTCCGGCCACAAGGGCTATGATTTGATCAATTAT
GAAAGGTCACGAACGAGCGGTGTTTATTTGCAGTTTCTTCGGCATGACAA
GTGCTTTAGGGTGTATATACTTCCGTTCTGCTTACTTGCGTTTAAATGGC
CTGGACCAAAAACCTTGCGCGATTACAAGGAAGTATGGGGAGTTCACCTT
TTGACACTATTTCCGAAGGGTATCGTTCTGATTTCGGAAAGAAGGGATAG
GAAGATATGTGAACTTCATCTGACTGCCTCCCAGTGTTTTGAAGTTGAAG
ATCTTAGATTCCTGTCGATTCCCTGA

Coding sequence (CDS) from alignment at NODE_426_length_25926_cov_5.837081:10194..11369+

>Gcaud255.t1 ID=Gcaud255.t1|Name=Gcaud255.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1176bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:10194..11369+ (Gracilaria caudata M_176_S67 male)
ATGGATTTCCACATATCCTGCTTCCCGAGAGACCTGCTTCAGCGCATCTT
CCAGATTGGCCTAAAAGAGGTTTGGGGCTTGTCAAACCCGGAAGTAGAAG
AGCTTGAGGACGACTCCGATGAAGAAGAAGATCTTGATCCGTTTCGCGTC
GAAAAGAGAAATCAGAATGGCTATCCCGATCGCTTCAAGCCGGACTACGA
TCCCTTTCGAGCACACCCGGAACTTTTGACGTTGATAGACTGCACGCAAG
TGTGTACGGCCTGGGCTGACGCCATTATCGACAAGGAATACTGGGATTCA
CTCTCTCCAGAGTCGTACGGGAGAgcgctagccgagccttggaaggtggg
aaagagatggaatcgattgttgaactatgtgccggtacccatcctgtgtg
tgaatgaagaactgctttccaatatcggaaagattcacatatccattctc
cgaggACGCGATGCGTTTGAGGTTTACGTTGTGTCTAATAGCGATCAAAA
GGAGCACATTCTCGAAGCCTGGTTCAACTTGCAACCCTTTCTGCAGACGA
GATGTGTGCGTCTTACCATCACGAATCCAATTGTCGCAACTGGCCGTGAC
AGATTCAACCGCACACGCGTCGATTTTCTACCGTTGATGCTGACCAAGTG
GCCTTTGCTGCAGTCATTGGACATTGACACCTCTGCGATTGAAGTTTTCA
CTCGTGAAACCTTCAAGGACAGGCAGGACAATTTCAAGCCCGTTTTGAGC
TCTGATCCACCGTTCCCTGCTCTGAAACGACTATGTCTCACCACGCATGT
GGACACACAAGCGGCGCAAGCCATCACTCTGTTAGCTCCTCATATCGAGG
ATTGTCGCATCGAATTTTCCGGCCACAAGGGCTATGATTTGATCAATTAT
GAAAGGTCACGAACGAGCGGTGTTTATTTGCAGTTTCTTCGGCATGACAA
GTGCTTTAGGGTGTATATACTTCCGTTCTGCTTACTTGCGTTTAAATGGC
CTGGACCAAAAACCTTGCGCGATTACAAGGAAGTATGGGGAGTTCACCTT
TTGACACTATTTCCGAAGGGTATCGTTCTGATTTCGGAAAGAAGGGATAG
GAAGATATGTGAACTTCATCTGACTGCCTCCCAGTGTTTTGAAGTTGAAG
ATCTTAGATTCCTGTCGATTCCCTGA