Gcaud2531.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2531.t1
Unique Name	Gcaud2531.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	530

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_290_length_32094_cov_4.541512	contig	NODE_290_length_32094_cov_4.541512:14923..16512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2531	Gcaud2531	Gracilaria caudata M_176_S67 male	gene	NODE_290_length_32094_cov_4.541512 14923..16512 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2531.t1.stop1	Gcaud2531.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_290_length_32094_cov_4.541512 14923..14925 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2531.t1.CDS1	Gcaud2531.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 14923..16512 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2531.t1.exon1	Gcaud2531.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 14923..16512 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2531.t1.start1	Gcaud2531.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_290_length_32094_cov_4.541512 16510..16512 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2531.t1	Gcaud2531.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_290_length_32094_cov_4.541512 14923..16512 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_290_length_32094_cov_4.541512:14923..16512-
coding sequence from alignment at NODE_290_length_32094_cov_4.541512:14923..16512-

mRNA sequence

>Gcaud2531.t1 ID=Gcaud2531.t1|Name=Gcaud2531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=530bp
MKRCRAVDDEHAPSFANVQPLDLEKLADDLELSEQVRHSVQQIVEEWDDT
PASLQSSPSKSAFSSHPMRLWASIRRLWNAVVPAEQQAQDALHTSTPPKR
SLLSSRPNGAARHSRQLVASANSSRGKRFFTAAEKQKAVLKPSLRNNLPV
HSNVDPFFTPRDQQQSPAPATHSTRPSARQTALPLRSSRRLASSRNAQRT
STTASRHTRRPNAHAVRPAVTEDRSMSSIHPPSSPLSHITASATPPSTPP
KSPTLRNNSPASPGNKPHIPHHTLSKSSSFTSKVTSSSEQNASMHTPTIS
PKSPPPAPAIHAPPYQLHEQLSNLTLVDPPPSQTPLEDFFDVDIDESAVA
TNAFPTDDDISTMRLLRNRSQSTPEPRRQRPQSPTTPERPPSLRRLHSSR
TVMRVAKAAVQDVERLASLRRRITGDMRVDRRLAHLRLLQSQLRARRSCL
PSTEDAKERLTGALDRLREKKRQALIEQQRRLSSSWRVPKLGDVPRNVKL
PPLRRPTRRAKEQRMTSSPTDIRRTSYAR*

spliced messenger RNA

>Gcaud2531.t1 ID=Gcaud2531.t1|Name=Gcaud2531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:14923..16512- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGATGTCGAGCTGTTGACGATGAGCACGCGCCTTCGTTCGCCAA
CGTACAGCCTCTGGATCTCGAAAAACTCGCCGATGACCTCGAACTATCCG
AACAGGTTCGTCACTCTGTGCAACAAATCGTGGAAGAATGGGATGATACA
CCAGCCTCTTTACAATCGTCGCCGTCAAAATCCGCTTTCAGCTCGCATCC
CATGAGACTATGGGCCTCCATTCGACGTCTTTGGAACGCCGTAGTTCCCG
CCGAACAGCAAGCTCAAGACGCTCTTCACACCTCTACACCCCCCAAACGA
AGCCTGCTTTCGTCGCGACCCAACGGCGCTGCCAGACATTCTCGTCAACT
TGTTGCGTCGGCCAATTCGTCCAGGGGAAAACGCTTCTTCACTGCTGCGG
AGAAGCAAAAGGCCGTTTTGAAACCATCCCTTCGTAATAATCTTCCCGTC
CATTCCAACGTCGATCCTTTCTTCACCCCGCGTGATCAACAACAGTCTCC
CGCCCCTGCCACCCATTCTACGCGCCCTTCAGCGCGACAGACTGCTCTTC
CGCTTCGTTCTAGTCGTCGTTTGGCGTCCAGTCGCAATGCGCAGCGCACA
TCTACAACCGCCTCACGCCACACCAGGCGTCCGAATGCACACGCTGTGCG
ACCCGCTGTCACGGAAGATCGCTCCATGAGTTCTATACATCCACCGTCTT
CTCCGTTAAGCCACATCACCGCCTCAGCAACCCCGCCTTCCACGCCGCCA
AAGTCCCCCACCCTCCGCAACAACTCGCCCGCATCGCCTGGAAACAAACC
GCACATCCCACATCACACGCTCTCCAAATCGTCGTCGTTCACGTCGAAGG
TGACATCATCCTCCGAACAGAACGCCTCGATGCACACCCCAACCATCTCT
CCCAAGTCGCCACCTCCCGCTCCCGCTATTCACGCGCCGCCTTATCAATT
ACACGAACAACTTTCGAATCTCACTCTTGTCGATCCGCCACCATCACAAA
CGCCATTGGAAGACTTTTTTGATGTCGATATCGATGAGAGTGCCGTGGCC
ACGAATGCATTTCCCACGGACGACGATATTTCCACCATGCGTCTATTGCG
CAATCGCTCGCAGTCCACACCCGAACCTCGCCGACAAAGGCCTCAGTCGC
CTACAACTCCGGAACGACCGCCCTCTTTGAGACGATTACATTCCTCTCGT
ACCGTGATGCGAGTTGCAAAGGCTGCCGTACAGGATGTTGAGCGGCTTGC
ATCTTTGCGTCGTCGAATCACTGGCGACATGCGTGTTGACAGAAGGCTTG
CTCATTTGAGACTTTTACAATCGCAGCTCCGTGCGAGACGTTCTTGTTTG
CCGTCCACAGAGGATGCGAAGGAACGTTTGACGGGTGCTTTGGATAGACT
TAGGGAGAAGAAGAGACAGGCTCTGATTGAACAACAGAGGCGACTTTCTA
GCTCCTGGAGGGTTCCGAAACTTGGTGATGTTCCAAGAAACGTCAAACTG
CCACCGCTGCGAAGACCTACCAGAAGAGCGAAAGAACAGAGGATGACTTC
AAGTCCTACGGATATACGTCGTACTAGTTATGCTCGTTGA

protein sequence of Gcaud2531.t1

>Gcaud2531.t1 ID=Gcaud2531.t1|Name=Gcaud2531.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=530bp
MKRCRAVDDEHAPSFANVQPLDLEKLADDLELSEQVRHSVQQIVEEWDDT
PASLQSSPSKSAFSSHPMRLWASIRRLWNAVVPAEQQAQDALHTSTPPKR
SLLSSRPNGAARHSRQLVASANSSRGKRFFTAAEKQKAVLKPSLRNNLPV
HSNVDPFFTPRDQQQSPAPATHSTRPSARQTALPLRSSRRLASSRNAQRT
STTASRHTRRPNAHAVRPAVTEDRSMSSIHPPSSPLSHITASATPPSTPP
KSPTLRNNSPASPGNKPHIPHHTLSKSSSFTSKVTSSSEQNASMHTPTIS
PKSPPPAPAIHAPPYQLHEQLSNLTLVDPPPSQTPLEDFFDVDIDESAVA
TNAFPTDDDISTMRLLRNRSQSTPEPRRQRPQSPTTPERPPSLRRLHSSR
TVMRVAKAAVQDVERLASLRRRITGDMRVDRRLAHLRLLQSQLRARRSCL
PSTEDAKERLTGALDRLREKKRQALIEQQRRLSSSWRVPKLGDVPRNVKL
PPLRRPTRRAKEQRMTSSPTDIRRTSYAR*

mRNA from alignment at NODE_290_length_32094_cov_4.541512:14923..16512-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2531.t1 ID=Gcaud2531.t1|Name=Gcaud2531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:14923..16512- (Gracilaria caudata M_176_S67 male)
ATGAAGCGATGTCGAGCTGTTGACGATGAGCACGCGCCTTCGTTCGCCAA
CGTACAGCCTCTGGATCTCGAAAAACTCGCCGATGACCTCGAACTATCCG
AACAGGTTCGTCACTCTGTGCAACAAATCGTGGAAGAATGGGATGATACA
CCAGCCTCTTTACAATCGTCGCCGTCAAAATCCGCTTTCAGCTCGCATCC
CATGAGACTATGGGCCTCCATTCGACGTCTTTGGAACGCCGTAGTTCCCG
CCGAACAGCAAGCTCAAGACGCTCTTCACACCTCTACACCCCCCAAACGA
AGCCTGCTTTCGTCGCGACCCAACGGCGCTGCCAGACATTCTCGTCAACT
TGTTGCGTCGGCCAATTCGTCCAGGGGAAAACGCTTCTTCACTGCTGCGG
AGAAGCAAAAGGCCGTTTTGAAACCATCCCTTCGTAATAATCTTCCCGTC
CATTCCAACGTCGATCCTTTCTTCACCCCGCGTGATCAACAACAGTCTCC
CGCCCCTGCCACCCATTCTACGCGCCCTTCAGCGCGACAGACTGCTCTTC
CGCTTCGTTCTAGTCGTCGTTTGGCGTCCAGTCGCAATGCGCAGCGCACA
TCTACAACCGCCTCACGCCACACCAGGCGTCCGAATGCACACGCTGTGCG
ACCCGCTGTCACGGAAGATCGCTCCATGAGTTCTATACATCCACCGTCTT
CTCCGTTAAGCCACATCACCGCCTCAGCAACCCCGCCTTCCACGCCGCCA
AAGTCCCCCACCCTCCGCAACAACTCGCCCGCATCGCCTGGAAACAAACC
GCACATCCCACATCACACGCTCTCCAAATCGTCGTCGTTCACGTCGAAGG
TGACATCATCCTCCGAACAGAACGCCTCGATGCACACCCCAACCATCTCT
CCCAAGTCGCCACCTCCCGCTCCCGCTATTCACGCGCCGCCTTATCAATT
ACACGAACAACTTTCGAATCTCACTCTTGTCGATCCGCCACCATCACAAA
CGCCATTGGAAGACTTTTTTGATGTCGATATCGATGAGAGTGCCGTGGCC
ACGAATGCATTTCCCACGGACGACGATATTTCCACCATGCGTCTATTGCG
CAATCGCTCGCAGTCCACACCCGAACCTCGCCGACAAAGGCCTCAGTCGC
CTACAACTCCGGAACGACCGCCCTCTTTGAGACGATTACATTCCTCTCGT
ACCGTGATGCGAGTTGCAAAGGCTGCCGTACAGGATGTTGAGCGGCTTGC
ATCTTTGCGTCGTCGAATCACTGGCGACATGCGTGTTGACAGAAGGCTTG
CTCATTTGAGACTTTTACAATCGCAGCTCCGTGCGAGACGTTCTTGTTTG
CCGTCCACAGAGGATGCGAAGGAACGTTTGACGGGTGCTTTGGATAGACT
TAGGGAGAAGAAGAGACAGGCTCTGATTGAACAACAGAGGCGACTTTCTA
GCTCCTGGAGGGTTCCGAAACTTGGTGATGTTCCAAGAAACGTCAAACTG
CCACCGCTGCGAAGACCTACCAGAAGAGCGAAAGAACAGAGGATGACTTC
AAGTCCTACGGATATACGTCGTACTAGTTATGCTCGTTGA

Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:14923..16512-

>Gcaud2531.t1 ID=Gcaud2531.t1|Name=Gcaud2531.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1590bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:14923..16512- (Gracilaria caudata M_176_S67 male)
ATGAAGCGATGTCGAGCTGTTGACGATGAGCACGCGCCTTCGTTCGCCAA
CGTACAGCCTCTGGATCTCGAAAAACTCGCCGATGACCTCGAACTATCCG
AACAGGTTCGTCACTCTGTGCAACAAATCGTGGAAGAATGGGATGATACA
CCAGCCTCTTTACAATCGTCGCCGTCAAAATCCGCTTTCAGCTCGCATCC
CATGAGACTATGGGCCTCCATTCGACGTCTTTGGAACGCCGTAGTTCCCG
CCGAACAGCAAGCTCAAGACGCTCTTCACACCTCTACACCCCCCAAACGA
AGCCTGCTTTCGTCGCGACCCAACGGCGCTGCCAGACATTCTCGTCAACT
TGTTGCGTCGGCCAATTCGTCCAGGGGAAAACGCTTCTTCACTGCTGCGG
AGAAGCAAAAGGCCGTTTTGAAACCATCCCTTCGTAATAATCTTCCCGTC
CATTCCAACGTCGATCCTTTCTTCACCCCGCGTGATCAACAACAGTCTCC
CGCCCCTGCCACCCATTCTACGCGCCCTTCAGCGCGACAGACTGCTCTTC
CGCTTCGTTCTAGTCGTCGTTTGGCGTCCAGTCGCAATGCGCAGCGCACA
TCTACAACCGCCTCACGCCACACCAGGCGTCCGAATGCACACGCTGTGCG
ACCCGCTGTCACGGAAGATCGCTCCATGAGTTCTATACATCCACCGTCTT
CTCCGTTAAGCCACATCACCGCCTCAGCAACCCCGCCTTCCACGCCGCCA
AAGTCCCCCACCCTCCGCAACAACTCGCCCGCATCGCCTGGAAACAAACC
GCACATCCCACATCACACGCTCTCCAAATCGTCGTCGTTCACGTCGAAGG
TGACATCATCCTCCGAACAGAACGCCTCGATGCACACCCCAACCATCTCT
CCCAAGTCGCCACCTCCCGCTCCCGCTATTCACGCGCCGCCTTATCAATT
ACACGAACAACTTTCGAATCTCACTCTTGTCGATCCGCCACCATCACAAA
CGCCATTGGAAGACTTTTTTGATGTCGATATCGATGAGAGTGCCGTGGCC
ACGAATGCATTTCCCACGGACGACGATATTTCCACCATGCGTCTATTGCG
CAATCGCTCGCAGTCCACACCCGAACCTCGCCGACAAAGGCCTCAGTCGC
CTACAACTCCGGAACGACCGCCCTCTTTGAGACGATTACATTCCTCTCGT
ACCGTGATGCGAGTTGCAAAGGCTGCCGTACAGGATGTTGAGCGGCTTGC
ATCTTTGCGTCGTCGAATCACTGGCGACATGCGTGTTGACAGAAGGCTTG
CTCATTTGAGACTTTTACAATCGCAGCTCCGTGCGAGACGTTCTTGTTTG
CCGTCCACAGAGGATGCGAAGGAACGTTTGACGGGTGCTTTGGATAGACT
TAGGGAGAAGAAGAGACAGGCTCTGATTGAACAACAGAGGCGACTTTCTA
GCTCCTGGAGGGTTCCGAAACTTGGTGATGTTCCAAGAAACGTCAAACTG
CCACCGCTGCGAAGACCTACCAGAAGAGCGAAAGAACAGAGGATGACTTC
AAGTCCTACGGATATACGTCGTACTAGTTATGCTCGTTGA