Gcaud25.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud25.t1
Unique NameGcaud25.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5940_length_1350_cov_5.010326contigNODE_5940_length_1350_cov_5.010326:29..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud25Gcaud25Gracilaria caudata M_176_S67 malegeneNODE_5940_length_1350_cov_5.010326 29..550 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud25.t1.start1Gcaud25.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5940_length_1350_cov_5.010326 29..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud25.t1.CDS1Gcaud25.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5940_length_1350_cov_5.010326 29..550 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud25.t1.exon1Gcaud25.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5940_length_1350_cov_5.010326 29..550 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud25.t1.stop1Gcaud25.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5940_length_1350_cov_5.010326 548..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud25.t1Gcaud25.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5940_length_1350_cov_5.010326 29..550 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud25.t1 ID=Gcaud25.t1|Name=Gcaud25.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=174bp
MQLSDASKSAYPRLPHRYKKQPSLFFTLPSQICKSRLGHLRSSHLYQCFS
ASNATPEMKIAIIALATVLCTVLSAPALREVDVDESVSIGGPGGFGGDAF
VTGAVVTGGVGGDGVVGSAEVENFGAIVGGDGILTATVGNGAVGTVDGDG
SITGFVTNTAIAGAGGAGGEASS*
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spliced messenger RNA

>Gcaud25.t1 ID=Gcaud25.t1|Name=Gcaud25.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp|location=Sequence derived from alignment at NODE_5940_length_1350_cov_5.010326:29..550+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACTTTCGGACGCGTCGAAATCTGCATATCCTCGTCTCCCGCACCG
CTATAAAAAGCAGCCCTCACTGTTCTTCACCCTCCCCTCTCAAATCTGCA
AGTCACGACTCGGACACTTGCGCAGTTCTCATCTTTATCAGTGCTTCTCA
GCTTCAAACGCCACTCCCGAAATGAAGATCGCCATCATCGCGCTCGCCAC
CGTGCTGTGCACTGTACTTAGCGCCCCCGCTTTGAGGGAAGTGGACGTCG
ACGAATCGGTCAGCATCGGCGGCCCTGGCGGCTTCGGAGGAGACGCCTTT
GTGACCGGTGCCGTCGTTACGGGCGGCGTTGGCGGCGACGGCGTTGTTGG
TAGTGCTGAAGTTGAAAACTTTGGCGCCATTGTGGGCGGCGACGGGATCT
TGACGGCGACCGTGGGGAATGGTGCTGTGGGAACGGTGGATGGTGATGGT
AGTATCACTGGCTTTGTGACTAACACTGCCATTGCCGGCGCTGGTGGCGC
TGGTGGTGAAGCTTCCTCTTAA
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protein sequence of Gcaud25.t1

>Gcaud25.t1 ID=Gcaud25.t1|Name=Gcaud25.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=174bp
MQLSDASKSAYPRLPHRYKKQPSLFFTLPSQICKSRLGHLRSSHLYQCFS
ASNATPEMKIAIIALATVLCTVLSAPALREVDVDESVSIGGPGGFGGDAF
VTGAVVTGGVGGDGVVGSAEVENFGAIVGGDGILTATVGNGAVGTVDGDG
SITGFVTNTAIAGAGGAGGEASS*
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mRNA from alignment at NODE_5940_length_1350_cov_5.010326:29..550+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud25.t1 ID=Gcaud25.t1|Name=Gcaud25.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp|location=Sequence derived from alignment at NODE_5940_length_1350_cov_5.010326:29..550+ (Gracilaria caudata M_176_S67 male)
ATGCAACTTTCGGACGCGTCGAAATCTGCATATCCTCGTCTCCCGCACCG
CTATAAAAAGCAGCCCTCACTGTTCTTCACCCTCCCCTCTCAAATCTGCA
AGTCACGACTCGGACACTTGCGCAGTTCTCATCTTTATCAGTGCTTCTCA
GCTTCAAACGCCACTCCCGAAATGAAGATCGCCATCATCGCGCTCGCCAC
CGTGCTGTGCACTGTACTTAGCGCCCCCGCTTTGAGGGAAGTGGACGTCG
ACGAATCGGTCAGCATCGGCGGCCCTGGCGGCTTCGGAGGAGACGCCTTT
GTGACCGGTGCCGTCGTTACGGGCGGCGTTGGCGGCGACGGCGTTGTTGG
TAGTGCTGAAGTTGAAAACTTTGGCGCCATTGTGGGCGGCGACGGGATCT
TGACGGCGACCGTGGGGAATGGTGCTGTGGGAACGGTGGATGGTGATGGT
AGTATCACTGGCTTTGTGACTAACACTGCCATTGCCGGCGCTGGTGGCGC
TGGTGGTGAAGCTTCCTCTTAA
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Coding sequence (CDS) from alignment at NODE_5940_length_1350_cov_5.010326:29..550+

>Gcaud25.t1 ID=Gcaud25.t1|Name=Gcaud25.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=522bp|location=Sequence derived from alignment at NODE_5940_length_1350_cov_5.010326:29..550+ (Gracilaria caudata M_176_S67 male)
ATGCAACTTTCGGACGCGTCGAAATCTGCATATCCTCGTCTCCCGCACCG
CTATAAAAAGCAGCCCTCACTGTTCTTCACCCTCCCCTCTCAAATCTGCA
AGTCACGACTCGGACACTTGCGCAGTTCTCATCTTTATCAGTGCTTCTCA
GCTTCAAACGCCACTCCCGAAATGAAGATCGCCATCATCGCGCTCGCCAC
CGTGCTGTGCACTGTACTTAGCGCCCCCGCTTTGAGGGAAGTGGACGTCG
ACGAATCGGTCAGCATCGGCGGCCCTGGCGGCTTCGGAGGAGACGCCTTT
GTGACCGGTGCCGTCGTTACGGGCGGCGTTGGCGGCGACGGCGTTGTTGG
TAGTGCTGAAGTTGAAAACTTTGGCGCCATTGTGGGCGGCGACGGGATCT
TGACGGCGACCGTGGGGAATGGTGCTGTGGGAACGGTGGATGGTGATGGT
AGTATCACTGGCTTTGTGACTAACACTGCCATTGCCGGCGCTGGTGGCGC
TGGTGGTGAAGCTTCCTCTTAA
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