Gcaud2474.t3 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2474.t3
Unique Name	Gcaud2474.t3
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1056_length_14488_cov_4.591929	contig	NODE_1056_length_14488_cov_4.591929:6756..8327 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7029.ACYPI009506-PA
Preferred name	MCPH1
PFAMs	BRCT,BRCT_2,Microcephalin,PTCB-BRCT
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K19403
GOs	GO:0000003,GO:0000122,GO:0000132,GO:0000226,GO:0000278,GO:0001501,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007050,GO:0007163,GO:0007275,GO:0007276,GO:0007277,GO:0007279,GO:0007346,GO:0007349,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0016043,GO:0016319,GO:0019219,GO:0019220,GO:0019222,GO:0019827,GO:0019953,GO:0021537,GO:0021543,GO:0021987,GO:0022402,GO:0022412,GO:0022414,GO:0030010,GO:0030154,GO:0030900,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034613,GO:0040001,GO:0042325,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043549,GO:0044380,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045448,GO:0045786,GO:0045892,GO:0045930,GO:0045934,GO:0046605,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050727,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051293,GO:0051294,GO:0051338,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0060255,GO:0060322,GO:0060348,GO:0060623,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0071539,GO:0071840,GO:0071850,GO:0072698,GO:0080090,GO:0080134,GO:0097150,GO:0098727,GO:1902679,GO:1902850,GO:1903047,GO:1903506,GO:1903507,GO:1905508,GO:2000112,GO:2000113,GO:2001141
Evalue	1.41e-08
EggNOG OGs	KOG4362@1\|root,KOG4362@2759\|Eukaryota,39SBQ@33154\|Opisthokonta,3BANR@33208\|Metazoa,3CZH1@33213\|Bilateria,41ZXZ@6656\|Arthropoda,3SNIN@50557\|Insecta,3EE5V@33342\|Paraneoptera
Description	twin BRCT domain
COG category	L
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2474	Gcaud2474	Gracilaria caudata M_176_S67 male	gene	NODE_1056_length_14488_cov_4.591929 6756..8435 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t3	Gcaud2474.t3	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1056_length_14488_cov_4.591929 6756..8327 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t3.stop1	Gcaud2474.t3.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1056_length_14488_cov_4.591929 6756..6758 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t3.CDS1	Gcaud2474.t3.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1056_length_14488_cov_4.591929 6756..7484 -
Gcaud2474.t3.CDS2	Gcaud2474.t3.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1056_length_14488_cov_4.591929 7740..8327 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t3.exon1	Gcaud2474.t3.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1056_length_14488_cov_4.591929 6756..7484 -
Gcaud2474.t3.exon2	Gcaud2474.t3.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1056_length_14488_cov_4.591929 7740..8327 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t3.intron1	Gcaud2474.t3.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1056_length_14488_cov_4.591929 7485..7739 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t3.start1	Gcaud2474.t3.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1056_length_14488_cov_4.591929 8325..8327 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1056_length_14488_cov_4.591929:6756..8327-
coding sequence from alignment at NODE_1056_length_14488_cov_4.591929:6756..8327-

mRNA sequence

>Gcaud2474.t3 ID=Gcaud2474.t3|Name=Gcaud2474.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=439bp
MIRAKTSDKISHKKPNEQKSTDKASRTVHLITDSDHSDDEHQADPPVDFG
EEEEDEEEQATEKSKEGTTAQPKDPDLMDFEDEDKVADKSSKADQGERKE
TGKKKKGAGASQSPKKTKKAKTKELSPSKTIKKSKVDLKSKSKVAKGKQT
ASKKATQAGKTKEKPSNPSKPSIPEPAAKATKEEQPSKNSAKNKPLPAGK
KVAKKSKAAKKKQDEEKEESETTGHVDDESESGEPVSDSDSMGDELARTP
SSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYI
IGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQS
PRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDL
VINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG*

spliced messenger RNA

>Gcaud2474.t3 ID=Gcaud2474.t3|Name=Gcaud2474.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..8327- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGTGCCAAGACCTCCGATAAAATCTCTCACAAGAAACCGAATGA
ACAGAAGAGCACTGACAAGGCCTCCCGAACTGTCCACCTCATTACCGACA
GTGACCACAGCGATGATGAGCATCAGGCGGACCCCCCAGTTGACTTTGGT
GAAGAGGAGGAGGACGAAGAGGAACAGGCAACTGAGAAATCCAAGGAAGG
TACAACAGCACAACCGAAAGACCCTGATCTTATGGATTTTGAAGACGAAG
ACAAGGTAGCTGACAAATCCTCGAAAGCTGACCAAGGCGAGAGGAAGGAG
ACTGGCAAAAAGAAGAAAGGCGCTGGAGCTTCTCAGTCTCCCAAGAAGAC
GAAGAAGGCAAAGACCAAAGAACTCTCTCCTTCGAAGACTATCAAGAAGT
CCAAGGTTGACCTGAAGTCGAAGTCAAAGGTTGCCAAAGGCAAGCAAACC
GCTTCGAAGAAAGCAACTCAGGCCGGGAAAACGAAAGAGAAGCCTTCAAA
CCCCTCAAAACCATCAATTCCCGAACCAGCTGCGAAGGCCACCAAAGAAG
AACAGCCTTCGAAGAACTCTGCGAAGAATAAGCCGCTTCCAGCTGGAAAG
AAAGTGGCAAAGAAGTCCAAAGCAGCCAAGAAGAAGCAGGATGAAGAGAA
AGAAGAGAGCGAAACAACCGGACATGTAGATGACGAGTCCGAAAGTGGAG
AGCCAGTATCTGATTCCGATTCAATGGGAGATGAATTGGCCAGGACACCG
TCTTCGAAGCTGGCGATTCTAGGTAACCTTGCCTGCAGTTCTCGAGATCA
GAACGCAGAAGCACTTCTTGATCATGCCGTGCAGCAGCTTGGCCGGTACC
ACATTGTGTCGTACAATGCTGAATCGAACACCGGATTAACAGCATACATC
ATTGGCAAAGGAACGAAACGGGGATGGGGTTTGCTGCAGGCTTTGGTAAG
CGGTGTTCCACTGGTATCTGAGAACTGGTTGTCTGGATCCATATCTGAGG
GGAAGTGGGTGCCCATGAACGCCTTTCGAAGTGATAGATTCGGTCAGTCG
CCTCGCTCCGTGGCAGGTGCAGAAGAGGCCAGGGGCAAACTCCTGGACGG
CCTTCGAATTCGGGTTGTATCAACGGAAAAGGATGCGTCAAGTATCCGTA
AGATTATACGACTCTGTGGGGCGCGCTTGGCTGAGACCAGGGTTGACCTC
GTGATTAACGACTCCAAGAGAAAAGTTGATACGTGCCCTAACGTACAGAA
GAAGTGGTTGGCAGACTCTATCGAAGCTGGGGTTCCTCTAGAGTACGAAC
CATACTCGTTGGGTTAA

protein sequence of Gcaud2474.t3

>Gcaud2474.t3 ID=Gcaud2474.t3|Name=Gcaud2474.t3|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MIRAKTSDKISHKKPNEQKSTDKASRTVHLITDSDHSDDEHQADPPVDFG
EEEEDEEEQATEKSKEGTTAQPKDPDLMDFEDEDKVADKSSKADQGERKE
TGKKKKGAGASQSPKKTKKAKTKELSPSKTIKKSKVDLKSKSKVAKGKQT
ASKKATQAGKTKEKPSNPSKPSIPEPAAKATKEEQPSKNSAKNKPLPAGK
KVAKKSKAAKKKQDEEKEESETTGHVDDESESGEPVSDSDSMGDELARTP
SSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYI
IGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQS
PRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDL
VINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG*

mRNA from alignment at NODE_1056_length_14488_cov_4.591929:6756..8327-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2474.t3 ID=Gcaud2474.t3|Name=Gcaud2474.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..8327- (Gracilaria caudata M_176_S67 male)
ATGATTCGTGCCAAGACCTCCGATAAAATCTCTCACAAGAAACCGAATGA
ACAGAAGAGCACTGACAAGGCCTCCCGAACTGTCCACCTCATTACCGACA
GTGACCACAGCGATGATGAGCATCAGGCGGACCCCCCAGTTGACTTTGGT
GAAGAGGAGGAGGACGAAGAGGAACAGGCAACTGAGAAATCCAAGGAAGG
TACAACAGCACAACCGAAAGACCCTGATCTTATGGATTTTGAAGACGAAG
ACAAGGTAGCTGACAAATCCTCGAAAGCTGACCAAGGCGAGAGGAAGGAG
ACTGGCAAAAAGAAGAAAGGCGCTGGAGCTTCTCAGTCTCCCAAGAAGAC
GAAGAAGGCAAAGACCAAAGAACTCTCTCCTTCGAAGACTATCAAGAAGT
CCAAGGTTGACCTGAAGTCGAAGTCAAAGGTTGCCAAAGGCAAGCAAACC
GCTTCGAAGAAAGCAACTCAGGCCGGGAAAACGAAAGAGAAGCCTTCAAA
CCCCTCAAAACCATCAATTCCCGAACCAGCTGCGAAGGCCACCAAAGAAG
AACAGCCTTCGAAGAACTCTGCGAAGAATAAGCCGCTTGTCAGAAAAGCT
GTGAAAGCCCCTCCGAAGGGCGAGAAAGCTTCTTCTGCGAAGCAGAAACC
CCTGAAAGTTAAGAAGGCGATCAATAAGGAAGAGGTAGCCAAGGAGAAGA
AATCCCCTGTCAAAAAGAGCACCAAAACAGTAACCCCTGTCACTACGTAC
TCGAAGAAGGCAAAGAAAGTTGGTCGTCAACCATCCAAGTCGGTCGCAAA
AGAGAAGAAAAAGTCAGGTGAGGATGTCGTTGCGCCCAAAAAGCCAGCTG
GAAAGAAAGTGGCAAAGAAGTCCAAAGCAGCCAAGAAGAAGCAGGATGAA
GAGAAAGAAGAGAGCGAAACAACCGGACATGTAGATGACGAGTCCGAAAG
TGGAGAGCCAGTATCTGATTCCGATTCAATGGGAGATGAATTGGCCAGGA
CACCGTCTTCGAAGCTGGCGATTCTAGGTAACCTTGCCTGCAGTTCTCGA
GATCAGAACGCAGAAGCACTTCTTGATCATGCCGTGCAGCAGCTTGGCCG
GTACCACATTGTGTCGTACAATGCTGAATCGAACACCGGATTAACAGCAT
ACATCATTGGCAAAGGAACGAAACGGGGATGGGGTTTGCTGCAGGCTTTG
GTAAGCGGTGTTCCACTGGTATCTGAGAACTGGTTGTCTGGATCCATATC
TGAGGGGAAGTGGGTGCCCATGAACGCCTTTCGAAGTGATAGATTCGGTC
AGTCGCCTCGCTCCGTGGCAGGTGCAGAAGAGGCCAGGGGCAAACTCCTG
GACGGCCTTCGAATTCGGGTTGTATCAACGGAAAAGGATGCGTCAAGTAT
CCGTAAGATTATACGACTCTGTGGGGCGCGCTTGGCTGAGACCAGGGTTG
ACCTCGTGATTAACGACTCCAAGAGAAAAGTTGATACGTGCCCTAACGTA
CAGAAGAAGTGGTTGGCAGACTCTATCGAAGCTGGGGTTCCTCTAGAGTA
CGAACCATACTCGTTGGGTTAA

Coding sequence (CDS) from alignment at NODE_1056_length_14488_cov_4.591929:6756..8327-

>Gcaud2474.t3 ID=Gcaud2474.t3|Name=Gcaud2474.t3|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1317bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..8327- (Gracilaria caudata M_176_S67 male)
ATGATTCGTGCCAAGACCTCCGATAAAATCTCTCACAAGAAACCGAATGA
ACAGAAGAGCACTGACAAGGCCTCCCGAACTGTCCACCTCATTACCGACA
GTGACCACAGCGATGATGAGCATCAGGCGGACCCCCCAGTTGACTTTGGT
GAAGAGGAGGAGGACGAAGAGGAACAGGCAACTGAGAAATCCAAGGAAGG
TACAACAGCACAACCGAAAGACCCTGATCTTATGGATTTTGAAGACGAAG
ACAAGGTAGCTGACAAATCCTCGAAAGCTGACCAAGGCGAGAGGAAGGAG
ACTGGCAAAAAGAAGAAAGGCGCTGGAGCTTCTCAGTCTCCCAAGAAGAC
GAAGAAGGCAAAGACCAAAGAACTCTCTCCTTCGAAGACTATCAAGAAGT
CCAAGGTTGACCTGAAGTCGAAGTCAAAGGTTGCCAAAGGCAAGCAAACC
GCTTCGAAGAAAGCAACTCAGGCCGGGAAAACGAAAGAGAAGCCTTCAAA
CCCCTCAAAACCATCAATTCCCGAACCAGCTGCGAAGGCCACCAAAGAAG
AACAGCCTTCGAAGAACTCTGCGAAGAATAAGCCGCTTCCAGCTGGAAAG
AAAGTGGCAAAGAAGTCCAAAGCAGCCAAGAAGAAGCAGGATGAAGAGAA
AGAAGAGAGCGAAACAACCGGACATGTAGATGACGAGTCCGAAAGTGGAG
AGCCAGTATCTGATTCCGATTCAATGGGAGATGAATTGGCCAGGACACCG
TCTTCGAAGCTGGCGATTCTAGGTAACCTTGCCTGCAGTTCTCGAGATCA
GAACGCAGAAGCACTTCTTGATCATGCCGTGCAGCAGCTTGGCCGGTACC
ACATTGTGTCGTACAATGCTGAATCGAACACCGGATTAACAGCATACATC
ATTGGCAAAGGAACGAAACGGGGATGGGGTTTGCTGCAGGCTTTGGTAAG
CGGTGTTCCACTGGTATCTGAGAACTGGTTGTCTGGATCCATATCTGAGG
GGAAGTGGGTGCCCATGAACGCCTTTCGAAGTGATAGATTCGGTCAGTCG
CCTCGCTCCGTGGCAGGTGCAGAAGAGGCCAGGGGCAAACTCCTGGACGG
CCTTCGAATTCGGGTTGTATCAACGGAAAAGGATGCGTCAAGTATCCGTA
AGATTATACGACTCTGTGGGGCGCGCTTGGCTGAGACCAGGGTTGACCTC
GTGATTAACGACTCCAAGAGAAAAGTTGATACGTGCCCTAACGTACAGAA
GAAGTGGTTGGCAGACTCTATCGAAGCTGGGGTTCCTCTAGAGTACGAAC
CATACTCGTTGGGTTAA