Gcaud2474.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2474.t2
Unique NameGcaud2474.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1056_length_14488_cov_4.591929contigNODE_1056_length_14488_cov_4.591929:6756..8435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7260.FBpp0251394
Preferred nameMCPH1
PFAMsBRCT,BRCT_2,Microcephalin,PTCB-BRCT
Max annot lvl33208|Metazoa
KEGG koko:K19403
GOsGO:0000003,GO:0000122,GO:0000132,GO:0000226,GO:0000278,GO:0001501,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007050,GO:0007163,GO:0007275,GO:0007276,GO:0007277,GO:0007279,GO:0007346,GO:0007349,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0016043,GO:0016319,GO:0019219,GO:0019220,GO:0019222,GO:0019827,GO:0019953,GO:0021537,GO:0021543,GO:0021987,GO:0022402,GO:0022412,GO:0022414,GO:0030010,GO:0030154,GO:0030900,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034613,GO:0040001,GO:0042325,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043549,GO:0044380,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045448,GO:0045786,GO:0045892,GO:0045930,GO:0045934,GO:0046605,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050727,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051293,GO:0051294,GO:0051338,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0060255,GO:0060322,GO:0060348,GO:0060623,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0071539,GO:0071840,GO:0071850,GO:0072698,GO:0080090,GO:0080134,GO:0097150,GO:0098727,GO:1902679,GO:1902850,GO:1903047,GO:1903506,GO:1903507,GO:1905508,GO:2000112,GO:2000113,GO:2001141
Evalue0.000243
EggNOG OGsKOG4362@1|root,KOG4362@2759|Eukaryota,39SBQ@33154|Opisthokonta,3BANR@33208|Metazoa,3CZH1@33213|Bilateria,41ZXZ@6656|Arthropoda,3SQ4P@50557|Insecta,450GX@7147|Diptera
DescriptionBRCA1 C Terminus (BRCT) domain
COG categoryKL
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2474Gcaud2474Gracilaria caudata M_176_S67 malegeneNODE_1056_length_14488_cov_4.591929 6756..8435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t2Gcaud2474.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_1056_length_14488_cov_4.591929 6756..8435 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t2.stop1Gcaud2474.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1056_length_14488_cov_4.591929 6756..6758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t2.CDS1Gcaud2474.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1056_length_14488_cov_4.591929 6756..7484 -
Gcaud2474.t2.CDS2Gcaud2474.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1056_length_14488_cov_4.591929 7740..8435 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t2.exon1Gcaud2474.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_1056_length_14488_cov_4.591929 6756..7484 -
Gcaud2474.t2.exon2Gcaud2474.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_1056_length_14488_cov_4.591929 7740..8435 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t2.intron1Gcaud2474.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_1056_length_14488_cov_4.591929 7485..7739 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t2.start1Gcaud2474.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1056_length_14488_cov_4.591929 8433..8435 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2474.t2 ID=Gcaud2474.t2|Name=Gcaud2474.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MTALNEALSDADTQEPVKTELQSHHIPESDDDDDVVMIRAKTSDKISHKK
PNEQKSTDKASRTVHLITDSDHSDDEHQADPPVDFGEEEEDEEEQATEKS
KEGTTAQPKDPDLMDFEDEDKVADKSSKADQGERKETGKKKKGAGASQSP
KKTKKAKTKELSPSKTIKKSKVDLKSKSKVAKGKQTASKKATQAGKTKEK
PSNPSKPSIPEPAAKATKEEQPSKNSAKNKPLPAGKKVAKKSKAAKKKQD
EEKEESETTGHVDDESESGEPVSDSDSMGDELARTPSSKLAILGNLACSS
RDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQA
LVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSVAGAEEARGKL
LDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPN
VQKKWLADSIEAGVPLEYEPYSLG*
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spliced messenger RNA

>Gcaud2474.t2 ID=Gcaud2474.t2|Name=Gcaud2474.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..8435- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCCTGAACGAAGCTTTGAGCGACGCAGATACTCAGGAACCGGT
CAAAACTGAGCTCCAATCCCATCACATCCCAGAAAGTGACGACGACGACG
ACGTTGTCATGATTCGTGCCAAGACCTCCGATAAAATCTCTCACAAGAAA
CCGAATGAACAGAAGAGCACTGACAAGGCCTCCCGAACTGTCCACCTCAT
TACCGACAGTGACCACAGCGATGATGAGCATCAGGCGGACCCCCCAGTTG
ACTTTGGTGAAGAGGAGGAGGACGAAGAGGAACAGGCAACTGAGAAATCC
AAGGAAGGTACAACAGCACAACCGAAAGACCCTGATCTTATGGATTTTGA
AGACGAAGACAAGGTAGCTGACAAATCCTCGAAAGCTGACCAAGGCGAGA
GGAAGGAGACTGGCAAAAAGAAGAAAGGCGCTGGAGCTTCTCAGTCTCCC
AAGAAGACGAAGAAGGCAAAGACCAAAGAACTCTCTCCTTCGAAGACTAT
CAAGAAGTCCAAGGTTGACCTGAAGTCGAAGTCAAAGGTTGCCAAAGGCA
AGCAAACCGCTTCGAAGAAAGCAACTCAGGCCGGGAAAACGAAAGAGAAG
CCTTCAAACCCCTCAAAACCATCAATTCCCGAACCAGCTGCGAAGGCCAC
CAAAGAAGAACAGCCTTCGAAGAACTCTGCGAAGAATAAGCCGCTTCCAG
CTGGAAAGAAAGTGGCAAAGAAGTCCAAAGCAGCCAAGAAGAAGCAGGAT
GAAGAGAAAGAAGAGAGCGAAACAACCGGACATGTAGATGACGAGTCCGA
AAGTGGAGAGCCAGTATCTGATTCCGATTCAATGGGAGATGAATTGGCCA
GGACACCGTCTTCGAAGCTGGCGATTCTAGGTAACCTTGCCTGCAGTTCT
CGAGATCAGAACGCAGAAGCACTTCTTGATCATGCCGTGCAGCAGCTTGG
CCGGTACCACATTGTGTCGTACAATGCTGAATCGAACACCGGATTAACAG
CATACATCATTGGCAAAGGAACGAAACGGGGATGGGGTTTGCTGCAGGCT
TTGGTAAGCGGTGTTCCACTGGTATCTGAGAACTGGTTGTCTGGATCCAT
ATCTGAGGGGAAGTGGGTGCCCATGAACGCCTTTCGAAGTGATAGATTCG
GTCAGTCGCCTCGCTCCGTGGCAGGTGCAGAAGAGGCCAGGGGCAAACTC
CTGGACGGCCTTCGAATTCGGGTTGTATCAACGGAAAAGGATGCGTCAAG
TATCCGTAAGATTATACGACTCTGTGGGGCGCGCTTGGCTGAGACCAGGG
TTGACCTCGTGATTAACGACTCCAAGAGAAAAGTTGATACGTGCCCTAAC
GTACAGAAGAAGTGGTTGGCAGACTCTATCGAAGCTGGGGTTCCTCTAGA
GTACGAACCATACTCGTTGGGTTAA
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protein sequence of Gcaud2474.t2

>Gcaud2474.t2 ID=Gcaud2474.t2|Name=Gcaud2474.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MTALNEALSDADTQEPVKTELQSHHIPESDDDDDVVMIRAKTSDKISHKK
PNEQKSTDKASRTVHLITDSDHSDDEHQADPPVDFGEEEEDEEEQATEKS
KEGTTAQPKDPDLMDFEDEDKVADKSSKADQGERKETGKKKKGAGASQSP
KKTKKAKTKELSPSKTIKKSKVDLKSKSKVAKGKQTASKKATQAGKTKEK
PSNPSKPSIPEPAAKATKEEQPSKNSAKNKPLPAGKKVAKKSKAAKKKQD
EEKEESETTGHVDDESESGEPVSDSDSMGDELARTPSSKLAILGNLACSS
RDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQA
LVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSVAGAEEARGKL
LDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPN
VQKKWLADSIEAGVPLEYEPYSLG*
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mRNA from alignment at NODE_1056_length_14488_cov_4.591929:6756..8435-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2474.t2 ID=Gcaud2474.t2|Name=Gcaud2474.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..8435- (Gracilaria caudata M_176_S67 male)
ATGACTGCCCTGAACGAAGCTTTGAGCGACGCAGATACTCAGGAACCGGT
CAAAACTGAGCTCCAATCCCATCACATCCCAGAAAGTGACGACGACGACG
ACGTTGTCATGATTCGTGCCAAGACCTCCGATAAAATCTCTCACAAGAAA
CCGAATGAACAGAAGAGCACTGACAAGGCCTCCCGAACTGTCCACCTCAT
TACCGACAGTGACCACAGCGATGATGAGCATCAGGCGGACCCCCCAGTTG
ACTTTGGTGAAGAGGAGGAGGACGAAGAGGAACAGGCAACTGAGAAATCC
AAGGAAGGTACAACAGCACAACCGAAAGACCCTGATCTTATGGATTTTGA
AGACGAAGACAAGGTAGCTGACAAATCCTCGAAAGCTGACCAAGGCGAGA
GGAAGGAGACTGGCAAAAAGAAGAAAGGCGCTGGAGCTTCTCAGTCTCCC
AAGAAGACGAAGAAGGCAAAGACCAAAGAACTCTCTCCTTCGAAGACTAT
CAAGAAGTCCAAGGTTGACCTGAAGTCGAAGTCAAAGGTTGCCAAAGGCA
AGCAAACCGCTTCGAAGAAAGCAACTCAGGCCGGGAAAACGAAAGAGAAG
CCTTCAAACCCCTCAAAACCATCAATTCCCGAACCAGCTGCGAAGGCCAC
CAAAGAAGAACAGCCTTCGAAGAACTCTGCGAAGAATAAGCCGCTTGTCA
GAAAAGCTGTGAAAGCCCCTCCGAAGGGCGAGAAAGCTTCTTCTGCGAAG
CAGAAACCCCTGAAAGTTAAGAAGGCGATCAATAAGGAAGAGGTAGCCAA
GGAGAAGAAATCCCCTGTCAAAAAGAGCACCAAAACAGTAACCCCTGTCA
CTACGTACTCGAAGAAGGCAAAGAAAGTTGGTCGTCAACCATCCAAGTCG
GTCGCAAAAGAGAAGAAAAAGTCAGGTGAGGATGTCGTTGCGCCCAAAAA
GCCAGCTGGAAAGAAAGTGGCAAAGAAGTCCAAAGCAGCCAAGAAGAAGC
AGGATGAAGAGAAAGAAGAGAGCGAAACAACCGGACATGTAGATGACGAG
TCCGAAAGTGGAGAGCCAGTATCTGATTCCGATTCAATGGGAGATGAATT
GGCCAGGACACCGTCTTCGAAGCTGGCGATTCTAGGTAACCTTGCCTGCA
GTTCTCGAGATCAGAACGCAGAAGCACTTCTTGATCATGCCGTGCAGCAG
CTTGGCCGGTACCACATTGTGTCGTACAATGCTGAATCGAACACCGGATT
AACAGCATACATCATTGGCAAAGGAACGAAACGGGGATGGGGTTTGCTGC
AGGCTTTGGTAAGCGGTGTTCCACTGGTATCTGAGAACTGGTTGTCTGGA
TCCATATCTGAGGGGAAGTGGGTGCCCATGAACGCCTTTCGAAGTGATAG
ATTCGGTCAGTCGCCTCGCTCCGTGGCAGGTGCAGAAGAGGCCAGGGGCA
AACTCCTGGACGGCCTTCGAATTCGGGTTGTATCAACGGAAAAGGATGCG
TCAAGTATCCGTAAGATTATACGACTCTGTGGGGCGCGCTTGGCTGAGAC
CAGGGTTGACCTCGTGATTAACGACTCCAAGAGAAAAGTTGATACGTGCC
CTAACGTACAGAAGAAGTGGTTGGCAGACTCTATCGAAGCTGGGGTTCCT
CTAGAGTACGAACCATACTCGTTGGGTTAA
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Coding sequence (CDS) from alignment at NODE_1056_length_14488_cov_4.591929:6756..8435-

>Gcaud2474.t2 ID=Gcaud2474.t2|Name=Gcaud2474.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..8435- (Gracilaria caudata M_176_S67 male)
ATGACTGCCCTGAACGAAGCTTTGAGCGACGCAGATACTCAGGAACCGGT
CAAAACTGAGCTCCAATCCCATCACATCCCAGAAAGTGACGACGACGACG
ACGTTGTCATGATTCGTGCCAAGACCTCCGATAAAATCTCTCACAAGAAA
CCGAATGAACAGAAGAGCACTGACAAGGCCTCCCGAACTGTCCACCTCAT
TACCGACAGTGACCACAGCGATGATGAGCATCAGGCGGACCCCCCAGTTG
ACTTTGGTGAAGAGGAGGAGGACGAAGAGGAACAGGCAACTGAGAAATCC
AAGGAAGGTACAACAGCACAACCGAAAGACCCTGATCTTATGGATTTTGA
AGACGAAGACAAGGTAGCTGACAAATCCTCGAAAGCTGACCAAGGCGAGA
GGAAGGAGACTGGCAAAAAGAAGAAAGGCGCTGGAGCTTCTCAGTCTCCC
AAGAAGACGAAGAAGGCAAAGACCAAAGAACTCTCTCCTTCGAAGACTAT
CAAGAAGTCCAAGGTTGACCTGAAGTCGAAGTCAAAGGTTGCCAAAGGCA
AGCAAACCGCTTCGAAGAAAGCAACTCAGGCCGGGAAAACGAAAGAGAAG
CCTTCAAACCCCTCAAAACCATCAATTCCCGAACCAGCTGCGAAGGCCAC
CAAAGAAGAACAGCCTTCGAAGAACTCTGCGAAGAATAAGCCGCTTCCAG
CTGGAAAGAAAGTGGCAAAGAAGTCCAAAGCAGCCAAGAAGAAGCAGGAT
GAAGAGAAAGAAGAGAGCGAAACAACCGGACATGTAGATGACGAGTCCGA
AAGTGGAGAGCCAGTATCTGATTCCGATTCAATGGGAGATGAATTGGCCA
GGACACCGTCTTCGAAGCTGGCGATTCTAGGTAACCTTGCCTGCAGTTCT
CGAGATCAGAACGCAGAAGCACTTCTTGATCATGCCGTGCAGCAGCTTGG
CCGGTACCACATTGTGTCGTACAATGCTGAATCGAACACCGGATTAACAG
CATACATCATTGGCAAAGGAACGAAACGGGGATGGGGTTTGCTGCAGGCT
TTGGTAAGCGGTGTTCCACTGGTATCTGAGAACTGGTTGTCTGGATCCAT
ATCTGAGGGGAAGTGGGTGCCCATGAACGCCTTTCGAAGTGATAGATTCG
GTCAGTCGCCTCGCTCCGTGGCAGGTGCAGAAGAGGCCAGGGGCAAACTC
CTGGACGGCCTTCGAATTCGGGTTGTATCAACGGAAAAGGATGCGTCAAG
TATCCGTAAGATTATACGACTCTGTGGGGCGCGCTTGGCTGAGACCAGGG
TTGACCTCGTGATTAACGACTCCAAGAGAAAAGTTGATACGTGCCCTAAC
GTACAGAAGAAGTGGTTGGCAGACTCTATCGAAGCTGGGGTTCCTCTAGA
GTACGAACCATACTCGTTGGGTTAA
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