Gcaud2462.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2462.t2
Unique Name	Gcaud2462.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	649

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_947_length_15859_cov_4.413686	contig	NODE_947_length_15859_cov_4.413686:5546..7492 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2462	Gcaud2462	Gracilaria caudata M_176_S67 male	gene	NODE_947_length_15859_cov_4.413686 5546..7492 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t2.start1	Gcaud2462.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_947_length_15859_cov_4.413686 5546..5548 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t2.CDS1	Gcaud2462.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_947_length_15859_cov_4.413686 5546..7492 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t2.exon1	Gcaud2462.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_947_length_15859_cov_4.413686 5546..7492 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t2.stop1	Gcaud2462.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_947_length_15859_cov_4.413686 7490..7492 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t2	Gcaud2462.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_947_length_15859_cov_4.413686 5546..7492 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_947_length_15859_cov_4.413686:5546..7492+
coding sequence from alignment at NODE_947_length_15859_cov_4.413686:5546..7492+

mRNA sequence

>Gcaud2462.t2 ID=Gcaud2462.t2|Name=Gcaud2462.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=649bp
MMKAVREEGKGRIITPHALQIDRAGDVIVKMKASVIDSERLTFTVLRKNM
QCALDSLEVTDSRGTTPLVTFSSPTNFDGKKMQSEQAWDAMLREARGARV
QVEAEGGCADGTLMGIQRDFAANDEQVCSTSVVLLSNGEVSVHRVDDIRS
VCFLDDDITERLKRESFLKHSVVETLKHYRIVIVVSGKGEGQVNVCYRQQ
SPYTPAFETFYTMNDTADENGYRKTKRFFTIRNPMHYDIVEVEVQLQTGI
YRRGRYGPAYGDVENPDSSSDSVSERSTEEDDEFFDLASSDSTTSIRAED
GLENNVYNINQKVTLKEGESVRIFHSETAVKCDFLFSTEIGKTNVVDTQS
IQNVGGELLGAGTWFWEDRATKEKRSFYYYDVAGHTEYGSALIWSSTPRC
RGSKQRIPEIGRALCSEVTGNKLRVSFEWNVTAIYRFQNESSHEFDMFLQ
HECVVSPRRRSHIEASMQYADKGMHAEEAGAKLELSCCSFRTGVRNFMLK
LAPRKETIVTVREKSTPECPLQREYAIPGDCTVKKLQFLRSRGAVNESTM
KRLEEVMRLVRDFSRLERDHKAHLEKLQMVRAKLEEEGKVEQENGEDLLG
KYLESMDRARTMSEGITEAVDRVELSMAETRLKIRKVISTLNAIGKTM*

spliced messenger RNA

>Gcaud2462.t2 ID=Gcaud2462.t2|Name=Gcaud2462.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:5546..7492+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAAGGCCGTACGAGAAGAAGGCAAAGGAAGAATCATAACTCCCCA
TGCGCTGCAAATTGATCGCGCGGGAGATGTTATCGTGAAGATGAAAGCGA
GCGTTATCGATTCCGAGCGGCTTACATTCACAGTGCTCAGGAAGAACATG
CAATGCGCGCTGGACTCGCTTGAAGTGACTGACAGTCGTGGCACAACCCC
CTTGGTCACGTTCAGCTCCCCGACTAACTTCGATGGGAAAAAGATGCAGT
CTGAGCAAGCGTGGGATGCCATGCTTCGAGAGGCCCGTGGAGCAAGAGTT
CAGGTTGAAGCAGAGGGTGGGTGTGCTGATGGAACCTTAATGGGTATACA
GAGAGACTTCGCCGCAAACGATGAGCAGGTCTGTTCTACGAGCGTGGTAC
TTCTGAGCAATGGAGAAGTTAGTGTTCATCGAGTCGACGACATTCGCTCA
GTTTGCTTCTTGGATGATGATATTACGGAACGACTAAAGCGAGAAAGCTT
TTTGAAGCATTCTGTGGTAGAGACGTTGAAGCATTATCGGATTGTTATTG
TTGTCTCCGGCAAGGGAGAAGGTCAGGTGAATGTGTGCTATCGCCAGCAA
AGCCCCTATACACCTGCGTTCGAGACTTTCTACACCATGAATGACACAGC
CGATGAGAATGGGTACAGGAAAACGAAGCGCTTCTTCACCATAAGAAATC
CAATGCATTATGACATAGTAGAGGTTGAGGTGCAGCTTCAAACTGGAATA
TATAGACGTGGCAGGTATGGTCCTGCTTACGGTGACGTTGAGAATCCGGA
CTCTAGTTCGGACAGCGTCTCAGAGAGATCGACAGAGGAGGACGACGAAT
TTTTTGACCTGGCGAGCAGTGATTCTACAACTTCAATCAGGGCAGAGGAC
GGTTTAGAGAACAACGTATACAATATCAATCAGAAAGTGACCTTGAAGGA
AGGAGAGTCGGTAAGAATTTTTCACTCTGAGACCGCTGTGAAGTGTGACT
TTCTATTTTCCACTGAGATAGGTAAAACTAATGTGGTAGACACGCAGAGC
ATTCAGAACGTGGGGGGTGAGCTTTTGGGGGCAGGAACATGGTTTTGGGA
GGACAGAGCGACGAAAGAGAAGAGAAGCTTCTACTACTACGATGTTGCGG
GGCATACCGAATACGGAAGCGCCTTGATTTGGTCAAGTACTCCAAGATGC
AGAGGATCGAAGCAAAGAATACCTGAGATCGGTCGCGCACTTTGTAGCGA
AGTGACAGGAAACAAGCTAAGGGTGAGCTTTGAATGGAATGTGACCGCAA
TTTACAGATTTCAGAACGAAAGCAGCCATGAGTTTGACATGTTCTTGCAG
CATGAATGTGTGGTGAGTCCACGAAGGAGGTCCCATATTGAAGCAAGCAT
GCAATACGCTGATAAGGGAATGCATGCTGAGGAAGCAGGTGCTAAATTGG
AACTGTCTTGCTGCAGCTTCAGGACTGGCGTTCGAAACTTCATGTTGAAG
CTGGCACCTCGCAAGGAGACAATCGTGACGGTGAGAGAGAAGTCTACTCC
GGAGTGTCCCCTGCAGCGCGAATACGCGATTCCCGGCGATTGCACTGTGA
AAAAGTTACAGTTCCTGCGCAGCCGAGGCGCCGTGAACGAGAGCACGATG
AAACGCCTTGAGGAAGTGATGCGTTTGGTACGGGACTTCTCCAGACTGGA
ACGAGATCACAAAGCTCACTTGGAGAAGCTACAGATGGTGAGGGCCAAGC
TGGAAGAAGAAGGGAAAGTGGAGCAGGAAAACGGAGAAGATCTACTGGGC
AAATATCTTGAGTCGATGGACAGGGCCAGGACGATGAGCGAAGGGATAAC
AGAGGCGGTGGATAGGGTGGAGTTGAGCATGGCGGAAACGAGGCTGAAAA
TAAGGAAGGTGATATCCACACTGAACGCCATCGGGAAGACCATGTGA

protein sequence of Gcaud2462.t2

>Gcaud2462.t2 ID=Gcaud2462.t2|Name=Gcaud2462.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=649bp
MMKAVREEGKGRIITPHALQIDRAGDVIVKMKASVIDSERLTFTVLRKNM
QCALDSLEVTDSRGTTPLVTFSSPTNFDGKKMQSEQAWDAMLREARGARV
QVEAEGGCADGTLMGIQRDFAANDEQVCSTSVVLLSNGEVSVHRVDDIRS
VCFLDDDITERLKRESFLKHSVVETLKHYRIVIVVSGKGEGQVNVCYRQQ
SPYTPAFETFYTMNDTADENGYRKTKRFFTIRNPMHYDIVEVEVQLQTGI
YRRGRYGPAYGDVENPDSSSDSVSERSTEEDDEFFDLASSDSTTSIRAED
GLENNVYNINQKVTLKEGESVRIFHSETAVKCDFLFSTEIGKTNVVDTQS
IQNVGGELLGAGTWFWEDRATKEKRSFYYYDVAGHTEYGSALIWSSTPRC
RGSKQRIPEIGRALCSEVTGNKLRVSFEWNVTAIYRFQNESSHEFDMFLQ
HECVVSPRRRSHIEASMQYADKGMHAEEAGAKLELSCCSFRTGVRNFMLK
LAPRKETIVTVREKSTPECPLQREYAIPGDCTVKKLQFLRSRGAVNESTM
KRLEEVMRLVRDFSRLERDHKAHLEKLQMVRAKLEEEGKVEQENGEDLLG
KYLESMDRARTMSEGITEAVDRVELSMAETRLKIRKVISTLNAIGKTM*

mRNA from alignment at NODE_947_length_15859_cov_4.413686:5546..7492+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2462.t2 ID=Gcaud2462.t2|Name=Gcaud2462.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:5546..7492+ (Gracilaria caudata M_176_S67 male)
ATGATGAAGGCCGTACGAGAAGAAGGCAAAGGAAGAATCATAACTCCCCA
TGCGCTGCAAATTGATCGCGCGGGAGATGTTATCGTGAAGATGAAAGCGA
GCGTTATCGATTCCGAGCGGCTTACATTCACAGTGCTCAGGAAGAACATG
CAATGCGCGCTGGACTCGCTTGAAGTGACTGACAGTCGTGGCACAACCCC
CTTGGTCACGTTCAGCTCCCCGACTAACTTCGATGGGAAAAAGATGCAGT
CTGAGCAAGCGTGGGATGCCATGCTTCGAGAGGCCCGTGGAGCAAGAGTT
CAGGTTGAAGCAGAGGGTGGGTGTGCTGATGGAACCTTAATGGGTATACA
GAGAGACTTCGCCGCAAACGATGAGCAGGTCTGTTCTACGAGCGTGGTAC
TTCTGAGCAATGGAGAAGTTAGTGTTCATCGAGTCGACGACATTCGCTCA
GTTTGCTTCTTGGATGATGATATTACGGAACGACTAAAGCGAGAAAGCTT
TTTGAAGCATTCTGTGGTAGAGACGTTGAAGCATTATCGGATTGTTATTG
TTGTCTCCGGCAAGGGAGAAGGTCAGGTGAATGTGTGCTATCGCCAGCAA
AGCCCCTATACACCTGCGTTCGAGACTTTCTACACCATGAATGACACAGC
CGATGAGAATGGGTACAGGAAAACGAAGCGCTTCTTCACCATAAGAAATC
CAATGCATTATGACATAGTAGAGGTTGAGGTGCAGCTTCAAACTGGAATA
TATAGACGTGGCAGGTATGGTCCTGCTTACGGTGACGTTGAGAATCCGGA
CTCTAGTTCGGACAGCGTCTCAGAGAGATCGACAGAGGAGGACGACGAAT
TTTTTGACCTGGCGAGCAGTGATTCTACAACTTCAATCAGGGCAGAGGAC
GGTTTAGAGAACAACGTATACAATATCAATCAGAAAGTGACCTTGAAGGA
AGGAGAGTCGGTAAGAATTTTTCACTCTGAGACCGCTGTGAAGTGTGACT
TTCTATTTTCCACTGAGATAGGTAAAACTAATGTGGTAGACACGCAGAGC
ATTCAGAACGTGGGGGGTGAGCTTTTGGGGGCAGGAACATGGTTTTGGGA
GGACAGAGCGACGAAAGAGAAGAGAAGCTTCTACTACTACGATGTTGCGG
GGCATACCGAATACGGAAGCGCCTTGATTTGGTCAAGTACTCCAAGATGC
AGAGGATCGAAGCAAAGAATACCTGAGATCGGTCGCGCACTTTGTAGCGA
AGTGACAGGAAACAAGCTAAGGGTGAGCTTTGAATGGAATGTGACCGCAA
TTTACAGATTTCAGAACGAAAGCAGCCATGAGTTTGACATGTTCTTGCAG
CATGAATGTGTGGTGAGTCCACGAAGGAGGTCCCATATTGAAGCAAGCAT
GCAATACGCTGATAAGGGAATGCATGCTGAGGAAGCAGGTGCTAAATTGG
AACTGTCTTGCTGCAGCTTCAGGACTGGCGTTCGAAACTTCATGTTGAAG
CTGGCACCTCGCAAGGAGACAATCGTGACGGTGAGAGAGAAGTCTACTCC
GGAGTGTCCCCTGCAGCGCGAATACGCGATTCCCGGCGATTGCACTGTGA
AAAAGTTACAGTTCCTGCGCAGCCGAGGCGCCGTGAACGAGAGCACGATG
AAACGCCTTGAGGAAGTGATGCGTTTGGTACGGGACTTCTCCAGACTGGA
ACGAGATCACAAAGCTCACTTGGAGAAGCTACAGATGGTGAGGGCCAAGC
TGGAAGAAGAAGGGAAAGTGGAGCAGGAAAACGGAGAAGATCTACTGGGC
AAATATCTTGAGTCGATGGACAGGGCCAGGACGATGAGCGAAGGGATAAC
AGAGGCGGTGGATAGGGTGGAGTTGAGCATGGCGGAAACGAGGCTGAAAA
TAAGGAAGGTGATATCCACACTGAACGCCATCGGGAAGACCATGTGA

Coding sequence (CDS) from alignment at NODE_947_length_15859_cov_4.413686:5546..7492+

>Gcaud2462.t2 ID=Gcaud2462.t2|Name=Gcaud2462.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1947bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:5546..7492+ (Gracilaria caudata M_176_S67 male)
ATGATGAAGGCCGTACGAGAAGAAGGCAAAGGAAGAATCATAACTCCCCA
TGCGCTGCAAATTGATCGCGCGGGAGATGTTATCGTGAAGATGAAAGCGA
GCGTTATCGATTCCGAGCGGCTTACATTCACAGTGCTCAGGAAGAACATG
CAATGCGCGCTGGACTCGCTTGAAGTGACTGACAGTCGTGGCACAACCCC
CTTGGTCACGTTCAGCTCCCCGACTAACTTCGATGGGAAAAAGATGCAGT
CTGAGCAAGCGTGGGATGCCATGCTTCGAGAGGCCCGTGGAGCAAGAGTT
CAGGTTGAAGCAGAGGGTGGGTGTGCTGATGGAACCTTAATGGGTATACA
GAGAGACTTCGCCGCAAACGATGAGCAGGTCTGTTCTACGAGCGTGGTAC
TTCTGAGCAATGGAGAAGTTAGTGTTCATCGAGTCGACGACATTCGCTCA
GTTTGCTTCTTGGATGATGATATTACGGAACGACTAAAGCGAGAAAGCTT
TTTGAAGCATTCTGTGGTAGAGACGTTGAAGCATTATCGGATTGTTATTG
TTGTCTCCGGCAAGGGAGAAGGTCAGGTGAATGTGTGCTATCGCCAGCAA
AGCCCCTATACACCTGCGTTCGAGACTTTCTACACCATGAATGACACAGC
CGATGAGAATGGGTACAGGAAAACGAAGCGCTTCTTCACCATAAGAAATC
CAATGCATTATGACATAGTAGAGGTTGAGGTGCAGCTTCAAACTGGAATA
TATAGACGTGGCAGGTATGGTCCTGCTTACGGTGACGTTGAGAATCCGGA
CTCTAGTTCGGACAGCGTCTCAGAGAGATCGACAGAGGAGGACGACGAAT
TTTTTGACCTGGCGAGCAGTGATTCTACAACTTCAATCAGGGCAGAGGAC
GGTTTAGAGAACAACGTATACAATATCAATCAGAAAGTGACCTTGAAGGA
AGGAGAGTCGGTAAGAATTTTTCACTCTGAGACCGCTGTGAAGTGTGACT
TTCTATTTTCCACTGAGATAGGTAAAACTAATGTGGTAGACACGCAGAGC
ATTCAGAACGTGGGGGGTGAGCTTTTGGGGGCAGGAACATGGTTTTGGGA
GGACAGAGCGACGAAAGAGAAGAGAAGCTTCTACTACTACGATGTTGCGG
GGCATACCGAATACGGAAGCGCCTTGATTTGGTCAAGTACTCCAAGATGC
AGAGGATCGAAGCAAAGAATACCTGAGATCGGTCGCGCACTTTGTAGCGA
AGTGACAGGAAACAAGCTAAGGGTGAGCTTTGAATGGAATGTGACCGCAA
TTTACAGATTTCAGAACGAAAGCAGCCATGAGTTTGACATGTTCTTGCAG
CATGAATGTGTGGTGAGTCCACGAAGGAGGTCCCATATTGAAGCAAGCAT
GCAATACGCTGATAAGGGAATGCATGCTGAGGAAGCAGGTGCTAAATTGG
AACTGTCTTGCTGCAGCTTCAGGACTGGCGTTCGAAACTTCATGTTGAAG
CTGGCACCTCGCAAGGAGACAATCGTGACGGTGAGAGAGAAGTCTACTCC
GGAGTGTCCCCTGCAGCGCGAATACGCGATTCCCGGCGATTGCACTGTGA
AAAAGTTACAGTTCCTGCGCAGCCGAGGCGCCGTGAACGAGAGCACGATG
AAACGCCTTGAGGAAGTGATGCGTTTGGTACGGGACTTCTCCAGACTGGA
ACGAGATCACAAAGCTCACTTGGAGAAGCTACAGATGGTGAGGGCCAAGC
TGGAAGAAGAAGGGAAAGTGGAGCAGGAAAACGGAGAAGATCTACTGGGC
AAATATCTTGAGTCGATGGACAGGGCCAGGACGATGAGCGAAGGGATAAC
AGAGGCGGTGGATAGGGTGGAGTTGAGCATGGCGGAAACGAGGCTGAAAA
TAAGGAAGGTGATATCCACACTGAACGCCATCGGGAAGACCATGTGA