Gcaud2443.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2443.t1
Unique Name	Gcaud2443.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:43453..44552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_002732370.1
Preferred name	TECR
PFAMs	Steroid_dh,ubiquitin
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00052,RC00120
KEGG ko	ko:K10258
KEGG Reaction	R07761,R09449,R10828
KEGG Pathway	ko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG Module	M00415
GOs	GO:0000038,GO:0003674,GO:0003824,GO:0003995,GO:0004466,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016627,GO:0017099,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046394,GO:0046483,GO:0046949,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071616,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576
Evalue	2.06e-95
EggNOG OGs	KOG1639@1\|root,KOG1639@2759\|Eukaryota,38FVN@33154\|Opisthokonta,3B95W@33208\|Metazoa,3CTSE@33213\|Bilateria
EC	1.3.1.93
Description	very-long-chain enoyl-CoA
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2443	Gcaud2443	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 43453..44552 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2443.t1	Gcaud2443.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 43453..44552 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2443.t1.start1	Gcaud2443.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 43453..43455 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2443.t1.CDS1	Gcaud2443.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 43453..43525 +
Gcaud2443.t1.CDS2	Gcaud2443.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 43633..44552 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2443.t1.exon1	Gcaud2443.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 43453..43525 +
Gcaud2443.t1.exon2	Gcaud2443.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 43633..44552 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2443.t1.intron1	Gcaud2443.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_42_length_67898_cov_4.520993 43526..43632 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2443.t1.stop1	Gcaud2443.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 44550..44552 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:43453..44552+
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:43453..44552+

mRNA sequence

>Gcaud2443.t1 ID=Gcaud2443.t1|Name=Gcaud2443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=331bp
MQGISHIAVFDVTDLRGPFLPSWSDANMKVSVESRSGRDLGFYLLKDGST
VAVLQKSFHQAHSKYYPDRQRFYAKQDSSTAKKPAALSADDVLVDGCTLV
FKDLGPQILWKTVFVVEYLGPLLLYPLFYSQPSWIYGGPYPPVSQAARDV
QFAALIAWTFHYAKRELETLFIHRFSHATMPLRNLFKNCSYYWGFAAYVA
YFVNHPLYTPPSVVNLSVGLCMFYFMEVGNFTAHWTLRTLRPPGTRIRKI
PRGGLFELVSCPNYTFEIMSWLGFNIMTNTIPGIMFMLAGAFQMLLWAQG
KHRRYKKEFDGKDDRPLYPPKRKILIPFIY*

spliced messenger RNA

>Gcaud2443.t1 ID=Gcaud2443.t1|Name=Gcaud2443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=993bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:43453..44552+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGTATCAGTCACATCGCAGTCTTCGATGTGACAGATCTTCGTGG
GCCTTTCTTGCCATCCTGGTCCGATGCTAACATGAAGGTTTCGGTCGAAT
CACGAAGTGGACGCGATCTCGGTTTCTACCTGCTCAAAGACGGTAGCACC
GTTGCTGTGCTCCAGAAATCCTTTCATCAAGCTCATAGTAAGTACTATCC
CGATCGACAGCGCTTCTATGCAAAGCAAGACTCTAGTACTGCCAAGAAGC
CAGCTGCGCTCTCTGCTGATGACGTCCTAGTAGATGGATGCACTCTTGTC
TTCAAAGATCTTGGACCACAGATTTTGTGGAAGACTGTGTTTGTTGTAGA
GTACCTTGGTCCTTTGTTGCTTTATCCTTTGTTTTACAGTCAGCCTTCTT
GGATCTATGGTGGTCCCTATCCTCCGGTTTCGCAGGCGGCGCGAGATGTA
CAGTTTGCTGCGCTGATCGCATGGACTTTTCACTATGCTAAGAGAGAATT
AGAGACTCTTTTCATTCACCGCTTTTCGCATGCCACTATGCCGCTTCGAA
ACTTGTTCAAGAATTGTTCTTACTATTGGGGCTTTGCAGCATATGTTGCG
TATTTTGTCAATCATCCATTGTACACCCCACCGTCCGTGGTAAATCTTTC
TGTGGGTTTGTGTATGTTCTATTTCATGGAGGTTGGAAATTTCACTGCCC
ACTGGACGCTTAGAACCTTACGTCCCCCTGGAACGAGGATTAGGAAGATT
CCTCGTGGAGGTTTGTTTGAGCTTGTCTCTTGTCCGAACTATACGTTCGA
GATTATGTCGTGGCTGGGGTTCAATATTATGACAAACACCATTCCGGGCA
TAATGTTTATGCTTGCCGGCGCGTTTCAAATGCTCCTATGGGCGCAAGGG
AAGCATCGTCGGTACAAGAAAGAATTCGATGGAAAGGACGATCGTCCCTT
ATATCCACCGAAGAGAAAGATTCTCATTCCGTTCATCTACTGA

protein sequence of Gcaud2443.t1

>Gcaud2443.t1 ID=Gcaud2443.t1|Name=Gcaud2443.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=331bp
MQGISHIAVFDVTDLRGPFLPSWSDANMKVSVESRSGRDLGFYLLKDGST
VAVLQKSFHQAHSKYYPDRQRFYAKQDSSTAKKPAALSADDVLVDGCTLV
FKDLGPQILWKTVFVVEYLGPLLLYPLFYSQPSWIYGGPYPPVSQAARDV
QFAALIAWTFHYAKRELETLFIHRFSHATMPLRNLFKNCSYYWGFAAYVA
YFVNHPLYTPPSVVNLSVGLCMFYFMEVGNFTAHWTLRTLRPPGTRIRKI
PRGGLFELVSCPNYTFEIMSWLGFNIMTNTIPGIMFMLAGAFQMLLWAQG
KHRRYKKEFDGKDDRPLYPPKRKILIPFIY*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:43453..44552+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2443.t1 ID=Gcaud2443.t1|Name=Gcaud2443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1100bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:43453..44552+ (Gracilaria caudata M_176_S67 male)
ATGCAGGGTATCAGTCACATCGCAGTCTTCGATGTGACAGATCTTCGTGG
GCCTTTCTTGCCATCCTGGTCCGGTGAGTGCCGCCATCGGTTTCAGCGCC
GGCATCAACGCAGACTCTCTTGCGCAGTGTCTGCCTCACTCACACCACTG
ATCGTTCACCTTTCCCTGACGCACACTTAGATGCTAACATGAAGGTTTCG
GTCGAATCACGAAGTGGACGCGATCTCGGTTTCTACCTGCTCAAAGACGG
TAGCACCGTTGCTGTGCTCCAGAAATCCTTTCATCAAGCTCATAGTAAGT
ACTATCCCGATCGACAGCGCTTCTATGCAAAGCAAGACTCTAGTACTGCC
AAGAAGCCAGCTGCGCTCTCTGCTGATGACGTCCTAGTAGATGGATGCAC
TCTTGTCTTCAAAGATCTTGGACCACAGATTTTGTGGAAGACTGTGTTTG
TTGTAGAGTACCTTGGTCCTTTGTTGCTTTATCCTTTGTTTTACAGTCAG
CCTTCTTGGATCTATGGTGGTCCCTATCCTCCGGTTTCGCAGGCGGCGCG
AGATGTACAGTTTGCTGCGCTGATCGCATGGACTTTTCACTATGCTAAGA
GAGAATTAGAGACTCTTTTCATTCACCGCTTTTCGCATGCCACTATGCCG
CTTCGAAACTTGTTCAAGAATTGTTCTTACTATTGGGGCTTTGCAGCATA
TGTTGCGTATTTTGTCAATCATCCATTGTACACCCCACCGTCCGTGGTAA
ATCTTTCTGTGGGTTTGTGTATGTTCTATTTCATGGAGGTTGGAAATTTC
ACTGCCCACTGGACGCTTAGAACCTTACGTCCCCCTGGAACGAGGATTAG
GAAGATTCCTCGTGGAGGTTTGTTTGAGCTTGTCTCTTGTCCGAACTATA
CGTTCGAGATTATGTCGTGGCTGGGGTTCAATATTATGACAAACACCATT
CCGGGCATAATGTTTATGCTTGCCGGCGCGTTTCAAATGCTCCTATGGGC
GCAAGGGAAGCATCGTCGGTACAAGAAAGAATTCGATGGAAAGGACGATC
GTCCCTTATATCCACCGAAGAGAAAGATTCTCATTCCGTTCATCTACTGA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:43453..44552+

>Gcaud2443.t1 ID=Gcaud2443.t1|Name=Gcaud2443.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=993bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:43453..44552+ (Gracilaria caudata M_176_S67 male)
ATGCAGGGTATCAGTCACATCGCAGTCTTCGATGTGACAGATCTTCGTGG
GCCTTTCTTGCCATCCTGGTCCGATGCTAACATGAAGGTTTCGGTCGAAT
CACGAAGTGGACGCGATCTCGGTTTCTACCTGCTCAAAGACGGTAGCACC
GTTGCTGTGCTCCAGAAATCCTTTCATCAAGCTCATAGTAAGTACTATCC
CGATCGACAGCGCTTCTATGCAAAGCAAGACTCTAGTACTGCCAAGAAGC
CAGCTGCGCTCTCTGCTGATGACGTCCTAGTAGATGGATGCACTCTTGTC
TTCAAAGATCTTGGACCACAGATTTTGTGGAAGACTGTGTTTGTTGTAGA
GTACCTTGGTCCTTTGTTGCTTTATCCTTTGTTTTACAGTCAGCCTTCTT
GGATCTATGGTGGTCCCTATCCTCCGGTTTCGCAGGCGGCGCGAGATGTA
CAGTTTGCTGCGCTGATCGCATGGACTTTTCACTATGCTAAGAGAGAATT
AGAGACTCTTTTCATTCACCGCTTTTCGCATGCCACTATGCCGCTTCGAA
ACTTGTTCAAGAATTGTTCTTACTATTGGGGCTTTGCAGCATATGTTGCG
TATTTTGTCAATCATCCATTGTACACCCCACCGTCCGTGGTAAATCTTTC
TGTGGGTTTGTGTATGTTCTATTTCATGGAGGTTGGAAATTTCACTGCCC
ACTGGACGCTTAGAACCTTACGTCCCCCTGGAACGAGGATTAGGAAGATT
CCTCGTGGAGGTTTGTTTGAGCTTGTCTCTTGTCCGAACTATACGTTCGA
GATTATGTCGTGGCTGGGGTTCAATATTATGACAAACACCATTCCGGGCA
TAATGTTTATGCTTGCCGGCGCGTTTCAAATGCTCCTATGGGCGCAAGGG
AAGCATCGTCGGTACAAGAAAGAATTCGATGGAAAGGACGATCGTCCCTT
ATATCCACCGAAGAGAAAGATTCTCATTCCGTTCATCTACTGA