Gcaud2436.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2436.t1
Unique Name	Gcaud2436.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:20607..22012 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7260.FBpp0241441
Preferred name	GRIK1
PFAMs	ANF_receptor,Lig_chan,Lig_chan-Glu_bd,SBP_bac_3
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K05201,ko:K05202,ko:K05313
KEGG TC	1.A.10.1.11,1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17,1.A.10.1.5
KEGG Pathway	ko04080,ko04724,map04080,map04724
GOs	GO:0003674,GO:0004888,GO:0004970,GO:0005215,GO:0005216,GO:0005230,GO:0005261,GO:0005267,GO:0005272,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0007154,GO:0007165,GO:0007166,GO:0007215,GO:0007267,GO:0007268,GO:0007610,GO:0007632,GO:0007634,GO:0008066,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009628,GO:0009642,GO:0009987,GO:0010646,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015267,GO:0015276,GO:0015277,GO:0015318,GO:0015672,GO:0016020,GO:0016057,GO:0022803,GO:0022824,GO:0022834,GO:0022835,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0030001,GO:0030594,GO:0032501,GO:0034220,GO:0035235,GO:0035249,GO:0035725,GO:0038023,GO:0042391,GO:0044464,GO:0046873,GO:0050789,GO:0050794,GO:0050803,GO:0050804,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0060025,GO:0060089,GO:0065007,GO:0065008,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0071632,GO:0071804,GO:0071805,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098916,GO:0099094,GO:0099177,GO:0099536,GO:0099537,GO:0104004
Evalue	1.47e-08
EggNOG OGs	KOG1052@1\|root,KOG3384@1\|root,KOG1052@2759\|Eukaryota,KOG3384@2759\|Eukaryota,38BIY@33154\|Opisthokonta,3B9S8@33208\|Metazoa,3CTGU@33213\|Bilateria,41VGM@6656\|Arthropoda,3SGCU@50557\|Insecta,455YN@7147\|Diptera
Description	activity. It is involved in the biological process described with ion transport
COG category	P
BRITE	ko00000,ko00001,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2436	Gcaud2436	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 20607..22012 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2436.t1	Gcaud2436.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 20607..22012 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2436.t1.start1	Gcaud2436.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 20607..20609 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2436.t1.CDS1	Gcaud2436.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 20607..21009 +
Gcaud2436.t1.CDS2	Gcaud2436.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 21091..21214 +
Gcaud2436.t1.CDS3	Gcaud2436.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 21289..21429 +
Gcaud2436.t1.CDS4	Gcaud2436.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 21523..22012 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2436.t1.exon1	Gcaud2436.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 20607..21009 +
Gcaud2436.t1.exon2	Gcaud2436.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 21091..21214 +
Gcaud2436.t1.exon3	Gcaud2436.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 21289..21429 +
Gcaud2436.t1.exon4	Gcaud2436.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 21523..22012 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2436.t1.intron1	Gcaud2436.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_42_length_67898_cov_4.520993 21010..21090 +
Gcaud2436.t1.intron2	Gcaud2436.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_42_length_67898_cov_4.520993 21215..21288 +
Gcaud2436.t1.intron3	Gcaud2436.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_42_length_67898_cov_4.520993 21430..21522 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2436.t1.stop1	Gcaud2436.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 22010..22012 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:20607..22012+
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:20607..22012+

mRNA sequence

>Gcaud2436.t1 ID=Gcaud2436.t1|Name=Gcaud2436.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=386bp
MMHNCTEDGSIKDDARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVS
FHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSID
LDLKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNEHGEST
CHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIR
PGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFEEILEAVANRSCK
FGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLA
TLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAAGGSF
LIISLVERIKRRTRKRLSRRRQLVSINLDDKGFAY*

spliced messenger RNA

>Gcaud2436.t1 ID=Gcaud2436.t1|Name=Gcaud2436.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:20607..22012+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCATAATTGTACCGAAGACGGTTCCATCAAAGATGATGCACGATG
TCAGTGTGATATCGGAATTGGCGGTTGGTACCTTTCTGCGAAGAGATACC
AACTCGTAGATATTCTCCCTGCGTTTATTCATGAAGGTATTCGTGTCTCA
TTTCACGTCTCCAGCACATTTTTGACCGGGGAGGACTTCTTCTTCCTCAC
GACGTTTGACGTGCGATCGTGGGtttgcatcttttcccttatcttgctct
ttgctcttGCCAAGTTAGTGGACCGTCGCTTTGTACCAGTTTCAATTGAT
CTGGACCTAAAAGAGGATGTTCGTCTATATGAAAGGCCATGCTGGCCTTT
TCATCGAGAAGAATGGAATTATGACCGCGTAGGAGAGGCAATGAAGAGCA
CTGTGGGCAAACTACTGCTTCAGCCTGGGAATGAACACGGAGAATCGACC
TGTCACTCCTGGCTATTGAACATTACTCTTGGCATTTGTGGGTTGTTCAT
CGTTTTGTCATATGAAGCCAGGATGACCGCCTTCCTCGTTCAAGAGAGGG
TGAACCCCGAATTCCAATCTATTGAAGACTTGAAGACTTGTCGAATCAGG
CCCGGAGATGTTTGTGTGCCCCGTGGAAGTGCAATTGAGAATTTCTGGAA
TGAGGCTATCGCAACCAGTGAATGTCACAAAGGAAATATGCCCTCTCTTC
GAGGGTCTTTCGAGGAGATATTGGAAGCCGTTGCAAATAGAAGCTGCAAG
TTTGGGCTTGTTCCTGATTCCACAGTCACCTCTGCGATTCATGGAATGTA
TTGCGGCCATCTACTTAAAAGCGAAGAGAATATATTCATCGATGGACTGG
GCATGGTTCTTCCAAAGAACTCTCCGTTCACGGAGGCCATGAGCCTAGCT
ACACTAGAGATAAGAGGCAGAGCATCAACTCCGAGCTGGGAGGAATACTT
TCGGAAAACGTCTGAGTGTCGGGCCGACACAGAAAATGGTGTAATGTTCT
CAAAGCTGCGAGTATTCTTCGTGATGGCATTTGCAGCTGGCGGGTCATTT
TTGATAATCTCTTTGGTTGAGAGGATCAAACGTAGAACGCGCAAAAGGCT
TTCTCGGAGAAGGCAGCTTGTGAGTATCAACTTGGACGACAAGGGGTTTG
CGTACTAA

protein sequence of Gcaud2436.t1

>Gcaud2436.t1 ID=Gcaud2436.t1|Name=Gcaud2436.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=386bp
MMHNCTEDGSIKDDARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVS
FHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSID
LDLKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNEHGEST
CHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIR
PGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFEEILEAVANRSCK
FGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLA
TLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAAGGSF
LIISLVERIKRRTRKRLSRRRQLVSINLDDKGFAY*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:20607..22012+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2436.t1 ID=Gcaud2436.t1|Name=Gcaud2436.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1406bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:20607..22012+ (Gracilaria caudata M_176_S67 male)
ATGATGCATAATTGTACCGAAGACGGTTCCATCAAAGATGATGCACGATG
TCAGTGTGATATCGGAATTGGCGGTTGGTACCTTTCTGCGAAGAGATACC
AACTCGTAGATATTCTCCCTGCGTTTATTCATGAAGGTATTCGTGTCTCA
TTTCACGTCTCCAGCACATTTTTGACCGGGGAGGACTTCTTCTTCCTCAC
GACGTTTGACGTGCGATCGTGGGtttgcatcttttcccttatcttgctct
ttgctcttGCCAAGTTAGTGGACCGTCGCTTTGTACCAGTTTCAATTGAT
CTGGACCTAAAAGAGGATGTTCGTCTATATGAAAGGCCATGCTGGCCTTT
TCATCGAGAAGAATGGAATTATGACCGCGTAGGAGAGGCAATGAAGAGCA
CTGGTAAGTCCATGGAAACAAATCGATTGAGGTCTGTCTTGCAGGCGTAA
CTAACTCTAACGTTTTGTTCGAATCTTTATAAAGTGGGCAAACTACTGCT
TCAGCCTGGGAATGAACACGGAGAATCGACCTGTCACTCCTGGCTATTGA
ACATTACTCTTGGCATTTGTGGGTTGTTCATCGTTTTGTCATATGAAGCC
AGGATGACGTACGTTCTCACCAGGAACCCAGGTTAAATCTTATTGTACGA
AGGTTCTAACATTTTTGTCCTTATTTCCGAAGCGCCTTCCTCGTTCAAGA
GAGGGTGAACCCCGAATTCCAATCTATTGAAGACTTGAAGACTTGTCGAA
TCAGGCCCGGAGATGTTTGTGTGCCCCGTGGAAGTGCAATTGAGAATTTC
TGGAATGAGGCTATCGCAACCAGGTAAGTGTACGACGATAACTGAATTCG
TTTAAGAGTCTCATTTTCAGGACTTCTGACCCCTCTCGCTTTCTCATGGT
TGCTCATGCCATGTAGTGAATGTCACAAAGGAAATATGCCCTCTCTTCGA
GGGTCTTTCGAGGAGATATTGGAAGCCGTTGCAAATAGAAGCTGCAAGTT
TGGGCTTGTTCCTGATTCCACAGTCACCTCTGCGATTCATGGAATGTATT
GCGGCCATCTACTTAAAAGCGAAGAGAATATATTCATCGATGGACTGGGC
ATGGTTCTTCCAAAGAACTCTCCGTTCACGGAGGCCATGAGCCTAGCTAC
ACTAGAGATAAGAGGCAGAGCATCAACTCCGAGCTGGGAGGAATACTTTC
GGAAAACGTCTGAGTGTCGGGCCGACACAGAAAATGGTGTAATGTTCTCA
AAGCTGCGAGTATTCTTCGTGATGGCATTTGCAGCTGGCGGGTCATTTTT
GATAATCTCTTTGGTTGAGAGGATCAAACGTAGAACGCGCAAAAGGCTTT
CTCGGAGAAGGCAGCTTGTGAGTATCAACTTGGACGACAAGGGGTTTGCG
TACTAA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:20607..22012+

>Gcaud2436.t1 ID=Gcaud2436.t1|Name=Gcaud2436.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1158bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:20607..22012+ (Gracilaria caudata M_176_S67 male)
ATGATGCATAATTGTACCGAAGACGGTTCCATCAAAGATGATGCACGATG
TCAGTGTGATATCGGAATTGGCGGTTGGTACCTTTCTGCGAAGAGATACC
AACTCGTAGATATTCTCCCTGCGTTTATTCATGAAGGTATTCGTGTCTCA
TTTCACGTCTCCAGCACATTTTTGACCGGGGAGGACTTCTTCTTCCTCAC
GACGTTTGACGTGCGATCGTGGGtttgcatcttttcccttatcttgctct
ttgctcttGCCAAGTTAGTGGACCGTCGCTTTGTACCAGTTTCAATTGAT
CTGGACCTAAAAGAGGATGTTCGTCTATATGAAAGGCCATGCTGGCCTTT
TCATCGAGAAGAATGGAATTATGACCGCGTAGGAGAGGCAATGAAGAGCA
CTGTGGGCAAACTACTGCTTCAGCCTGGGAATGAACACGGAGAATCGACC
TGTCACTCCTGGCTATTGAACATTACTCTTGGCATTTGTGGGTTGTTCAT
CGTTTTGTCATATGAAGCCAGGATGACCGCCTTCCTCGTTCAAGAGAGGG
TGAACCCCGAATTCCAATCTATTGAAGACTTGAAGACTTGTCGAATCAGG
CCCGGAGATGTTTGTGTGCCCCGTGGAAGTGCAATTGAGAATTTCTGGAA
TGAGGCTATCGCAACCAGTGAATGTCACAAAGGAAATATGCCCTCTCTTC
GAGGGTCTTTCGAGGAGATATTGGAAGCCGTTGCAAATAGAAGCTGCAAG
TTTGGGCTTGTTCCTGATTCCACAGTCACCTCTGCGATTCATGGAATGTA
TTGCGGCCATCTACTTAAAAGCGAAGAGAATATATTCATCGATGGACTGG
GCATGGTTCTTCCAAAGAACTCTCCGTTCACGGAGGCCATGAGCCTAGCT
ACACTAGAGATAAGAGGCAGAGCATCAACTCCGAGCTGGGAGGAATACTT
TCGGAAAACGTCTGAGTGTCGGGCCGACACAGAAAATGGTGTAATGTTCT
CAAAGCTGCGAGTATTCTTCGTGATGGCATTTGCAGCTGGCGGGTCATTT
TTGATAATCTCTTTGGTTGAGAGGATCAAACGTAGAACGCGCAAAAGGCT
TTCTCGGAGAAGGCAGCTTGTGAGTATCAACTTGGACGACAAGGGGTTTG
CGTACTAA