Gcaud2434.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2434.t1
Unique NameGcaud2434.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_42_length_67898_cov_4.520993contigNODE_42_length_67898_cov_4.520993:15284..16141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707975.1
Preferred nameSLC25A37
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01893,ko:K15113,ko:K17907
KEGG TC2.A.29.5,9.A.15.1
KEGG ReactionR03648
KEGG Pathwayko00970,ko04136,ko04137,ko04138,ko04140,map00970,map04136,map04137,map04138,map04140
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000041,GO:0002262,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008324,GO:0008380,GO:0009790,GO:0009987,GO:0010467,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0016070,GO:0019866,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022857,GO:0022890,GO:0030001,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0034101,GO:0034220,GO:0034641,GO:0034755,GO:0035162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043249,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0046873,GO:0046915,GO:0048232,GO:0048250,GO:0048468,GO:0048469,GO:0048513,GO:0048515,GO:0048534,GO:0048568,GO:0048609,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051704,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055085,GO:0060586,GO:0061515,GO:0065007,GO:0065008,GO:0070838,GO:0071695,GO:0071704,GO:0072509,GO:0072511,GO:0090304,GO:0097286,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:1901360,GO:1903874,GO:1990542
Evalue1.2e-86
EggNOG OGsKOG0760@1|root,KOG0760@2759|Eukaryota
EC6.1.1.22
Descriptioniron import into the mitochondrion
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02000,ko03016,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2434Gcaud2434Gracilaria caudata M_176_S67 malegeneNODE_42_length_67898_cov_4.520993 15284..16141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2434.t1.stop1Gcaud2434.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_42_length_67898_cov_4.520993 15284..15286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2434.t1.CDS1Gcaud2434.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_42_length_67898_cov_4.520993 15284..16141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2434.t1.exon1Gcaud2434.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_42_length_67898_cov_4.520993 15284..16141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2434.t1.start1Gcaud2434.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_42_length_67898_cov_4.520993 16139..16141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2434.t1Gcaud2434.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_42_length_67898_cov_4.520993 15284..16141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2434.t1 ID=Gcaud2434.t1|Name=Gcaud2434.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=286bp
MVAGAAAGMAEHMAMFPVDTLKTRMQSYVAPLDAPGSSVWRVARAVVQTE
GLRALWRGVGAVALSAGPAHALYFATYEAVRGNGDEQRGVRAGATAMAGV
CATVVSDGVMTPLDVVKQRMQLSGGGAYASVLQCARTVYEQHGVRAFFAG
YQATLLMNVPFTALYFVTYESAKRAILRGASRREHEFSAGAHCVAGGMGG
AVAAAATNPLDVAKTRLQTQGEVGARRYGGLRDALRAIAREEGAAGLLRG
VRARVMFHVPAAAICWTTYEFCKHVMTPTTRAAAM*
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spliced messenger RNA

>Gcaud2434.t1 ID=Gcaud2434.t1|Name=Gcaud2434.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:15284..16141- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGGGCGCGGCGGCGGGCATGGCGGAGCACATGGCGATGTTTCC
GGTGGACACACTCAAGACGCGCATGCAGTCGTACGTGGCGCCGCTCGACG
CACCGGGAAGCAGCGTGTGGCGCGTGGCGCGCGCAGTGGTGCAGACGGAG
GGGCTGCGCGCGCTGTGGCGCGGCGTGGGCGCGGTGGCATTGTCGGCCGG
GCCGGCGCACGCGCTGTACTTTGCGACGTACGAGGCGGTGCGCGGCAACG
GCGACGAACAACGCGGCGTGCGCGCGGGCGCCACGGCGATGGCGGGTGTG
TGCGCGACGGTGGTGAGTGACGGCGTGATGACACCGCTGGATGTGGTGAA
ACAACGCATGCAACTGAGCGGCGGCGGCGCGTACGCGTCGGTGCTGCAGT
GCGCCAGGACGGTGTACGAGCAACACGGCGTGCGCGCGTTCTTCGCGGGG
TATCAGGCCACGCTGCTGATGAACGTGCCGTTCACGGCGCTGTACTTTGT
GACGTACGAGAGCGCCAAGCGCGCCATTCTGCGCGGCGCGTCGCGGCGCG
AGCACGAGTTCTCGGCGGGCGCGCACTGCGTGGCGGGTGGGATGGGTGGC
GCGGTGGCGGCGGCGGCCACCAACCCGCTGGACGTGGCCAAGACGCGGCT
GCAGACGCAGGGCGAGGTGGGCGCGCGACGCTACGGCGGGCTGCGCGACG
CGCTGCGCGCGATTGCGCGCGAGGAGGGCGCGGCGGGGCTGCTGCGCGGC
GTGAGGGCGCGCGTGATGTTCCACGTGCCGGCCGCGGCCATTTGCTGGAC
CACGTACGAGTTTTGCAAGCACGTGATGACTCCCACTACGCGCGCCGCCG
CCATGTGA
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protein sequence of Gcaud2434.t1

>Gcaud2434.t1 ID=Gcaud2434.t1|Name=Gcaud2434.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=286bp
MVAGAAAGMAEHMAMFPVDTLKTRMQSYVAPLDAPGSSVWRVARAVVQTE
GLRALWRGVGAVALSAGPAHALYFATYEAVRGNGDEQRGVRAGATAMAGV
CATVVSDGVMTPLDVVKQRMQLSGGGAYASVLQCARTVYEQHGVRAFFAG
YQATLLMNVPFTALYFVTYESAKRAILRGASRREHEFSAGAHCVAGGMGG
AVAAAATNPLDVAKTRLQTQGEVGARRYGGLRDALRAIAREEGAAGLLRG
VRARVMFHVPAAAICWTTYEFCKHVMTPTTRAAAM*
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mRNA from alignment at NODE_42_length_67898_cov_4.520993:15284..16141-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2434.t1 ID=Gcaud2434.t1|Name=Gcaud2434.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:15284..16141- (Gracilaria caudata M_176_S67 male)
ATGGTGGCGGGCGCGGCGGCGGGCATGGCGGAGCACATGGCGATGTTTCC
GGTGGACACACTCAAGACGCGCATGCAGTCGTACGTGGCGCCGCTCGACG
CACCGGGAAGCAGCGTGTGGCGCGTGGCGCGCGCAGTGGTGCAGACGGAG
GGGCTGCGCGCGCTGTGGCGCGGCGTGGGCGCGGTGGCATTGTCGGCCGG
GCCGGCGCACGCGCTGTACTTTGCGACGTACGAGGCGGTGCGCGGCAACG
GCGACGAACAACGCGGCGTGCGCGCGGGCGCCACGGCGATGGCGGGTGTG
TGCGCGACGGTGGTGAGTGACGGCGTGATGACACCGCTGGATGTGGTGAA
ACAACGCATGCAACTGAGCGGCGGCGGCGCGTACGCGTCGGTGCTGCAGT
GCGCCAGGACGGTGTACGAGCAACACGGCGTGCGCGCGTTCTTCGCGGGG
TATCAGGCCACGCTGCTGATGAACGTGCCGTTCACGGCGCTGTACTTTGT
GACGTACGAGAGCGCCAAGCGCGCCATTCTGCGCGGCGCGTCGCGGCGCG
AGCACGAGTTCTCGGCGGGCGCGCACTGCGTGGCGGGTGGGATGGGTGGC
GCGGTGGCGGCGGCGGCCACCAACCCGCTGGACGTGGCCAAGACGCGGCT
GCAGACGCAGGGCGAGGTGGGCGCGCGACGCTACGGCGGGCTGCGCGACG
CGCTGCGCGCGATTGCGCGCGAGGAGGGCGCGGCGGGGCTGCTGCGCGGC
GTGAGGGCGCGCGTGATGTTCCACGTGCCGGCCGCGGCCATTTGCTGGAC
CACGTACGAGTTTTGCAAGCACGTGATGACTCCCACTACGCGCGCCGCCG
CCATGTGA
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Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:15284..16141-

>Gcaud2434.t1 ID=Gcaud2434.t1|Name=Gcaud2434.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=858bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:15284..16141- (Gracilaria caudata M_176_S67 male)
ATGGTGGCGGGCGCGGCGGCGGGCATGGCGGAGCACATGGCGATGTTTCC
GGTGGACACACTCAAGACGCGCATGCAGTCGTACGTGGCGCCGCTCGACG
CACCGGGAAGCAGCGTGTGGCGCGTGGCGCGCGCAGTGGTGCAGACGGAG
GGGCTGCGCGCGCTGTGGCGCGGCGTGGGCGCGGTGGCATTGTCGGCCGG
GCCGGCGCACGCGCTGTACTTTGCGACGTACGAGGCGGTGCGCGGCAACG
GCGACGAACAACGCGGCGTGCGCGCGGGCGCCACGGCGATGGCGGGTGTG
TGCGCGACGGTGGTGAGTGACGGCGTGATGACACCGCTGGATGTGGTGAA
ACAACGCATGCAACTGAGCGGCGGCGGCGCGTACGCGTCGGTGCTGCAGT
GCGCCAGGACGGTGTACGAGCAACACGGCGTGCGCGCGTTCTTCGCGGGG
TATCAGGCCACGCTGCTGATGAACGTGCCGTTCACGGCGCTGTACTTTGT
GACGTACGAGAGCGCCAAGCGCGCCATTCTGCGCGGCGCGTCGCGGCGCG
AGCACGAGTTCTCGGCGGGCGCGCACTGCGTGGCGGGTGGGATGGGTGGC
GCGGTGGCGGCGGCGGCCACCAACCCGCTGGACGTGGCCAAGACGCGGCT
GCAGACGCAGGGCGAGGTGGGCGCGCGACGCTACGGCGGGCTGCGCGACG
CGCTGCGCGCGATTGCGCGCGAGGAGGGCGCGGCGGGGCTGCTGCGCGGC
GTGAGGGCGCGCGTGATGTTCCACGTGCCGGCCGCGGCCATTTGCTGGAC
CACGTACGAGTTTTGCAAGCACGTGATGACTCCCACTACGCGCGCCGCCG
CCATGTGA
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