Gcaud2431.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2431.t1
Unique Name	Gcaud2431.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7559_length_895_cov_19.665423	contig	NODE_7559_length_895_cov_19.665423:69..895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2431	Gcaud2431	Gracilaria caudata M_176_S67 male	gene	NODE_7559_length_895_cov_19.665423 69..895 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2431.t1.start1	Gcaud2431.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7559_length_895_cov_19.665423 69..71 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2431.t1.CDS1	Gcaud2431.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7559_length_895_cov_19.665423 69..895 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2431.t1.exon1	Gcaud2431.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7559_length_895_cov_19.665423 69..895 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2431.t1	Gcaud2431.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7559_length_895_cov_19.665423 69..895 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7559_length_895_cov_19.665423:69..895+
coding sequence from alignment at NODE_7559_length_895_cov_19.665423:69..895+

mRNA sequence

>Gcaud2431.t1 ID=Gcaud2431.t1|Name=Gcaud2431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=276bp
MSESQSSSSKVFSGNRESAGLLCALKTTEKRNGIRRRPFEERPNPEYRRL
LEDRDAALFARDAALVTRDEALLEKKTALCERERAIQHLHMTESEKQRVL
NLWHVANMHNCELKLTLSNAQYELSQGRQRELLLSDEKNSLQEGMEAFED
ENQKLRELAMRKSAVIEGHLATIVNLNAHITNISQVNITIESLKHEIAAE
QCRVAQQRAQLEAFENYVREMEHEHERQLGWCHHHIESLHQQRQETETAV
ASFLGKHPELQIDIALMMKADRVQAA

spliced messenger RNA

>Gcaud2431.t1 ID=Gcaud2431.t1|Name=Gcaud2431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=827bp|location=Sequence derived from alignment at NODE_7559_length_895_cov_19.665423:69..895+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGAGCCAATCAAGTTCGAGCAAGGTGTTCAGCGGAAATCGCGA
AAGTGCAGGTTTATTATGCGCACTCAAGACAACCGAGAAGCGTAACGGCA
TTCGCCGTCGTCCTTTTGAAGAACGCCCAAACCCCGAGTACCGGCGCCTT
TTGGAGGATCGAGATGCGGCCTTGTTTGCAAGAGATGCCGCTCTTGTGAC
GAGAGATGAAGCTCTGCTCGAAAAGAAAACTGCTTTGTGTGAGAGAGAAA
GAGCCATTCAGCACCTTCATATGACAGAAAGTGAGAAGCAACGTGTTCTA
AACCTATGGCACGTTGCCAACATGCATAATTGCGAGCTCAAGCTCACTTT
GAGCAATGCCCAGTATGAGCTATCTCAAGGCCGGCAAAGAGAGCTTCTCC
TAAGTGATGAAAAAAATTCGTTACAAGAGGGCATGGAAGCTTTCGAGGAC
GAAAACCAGAAGCTTCGGGAGTTAGCGATGAGGAAGAGTGCAGTGATTGA
GGGTCACCTTGCGACTATCGTTAACCTCAACGCTCACATTACAAACATCT
CTCAAGTGAACATCACCATCGAGTCCCTGAAGCATGAGATTGCAGCCGAG
CAATGCAGGGTGGCACAACAACGAGCACAACTGGAAGCGTTTGAAAACTA
CGTTCGTGAAATGGAGCACGAACATGAGAGGCAATTGGGATGGTGCCACC
ATCATATCGAATCCCTTCATCAGCAACGTCAGGAGACGGAGACTGCTGTT
GCAAGCTTTTTGGGTAAACACCCAGAGTTACAGATCGATATTGCTCTCAT
GATGAAGGCCGATCGTGTCCAGGCGGC

protein sequence of Gcaud2431.t1

>Gcaud2431.t1 ID=Gcaud2431.t1|Name=Gcaud2431.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MSESQSSSSKVFSGNRESAGLLCALKTTEKRNGIRRRPFEERPNPEYRRL
LEDRDAALFARDAALVTRDEALLEKKTALCERERAIQHLHMTESEKQRVL
NLWHVANMHNCELKLTLSNAQYELSQGRQRELLLSDEKNSLQEGMEAFED
ENQKLRELAMRKSAVIEGHLATIVNLNAHITNISQVNITIESLKHEIAAE
QCRVAQQRAQLEAFENYVREMEHEHERQLGWCHHHIESLHQQRQETETAV
ASFLGKHPELQIDIALMMKADRVQAA

mRNA from alignment at NODE_7559_length_895_cov_19.665423:69..895+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2431.t1 ID=Gcaud2431.t1|Name=Gcaud2431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=827bp|location=Sequence derived from alignment at NODE_7559_length_895_cov_19.665423:69..895+ (Gracilaria caudata M_176_S67 male)
ATGAGCGAGAGCCAATCAAGTTCGAGCAAGGTGTTCAGCGGAAATCGCGA
AAGTGCAGGTTTATTATGCGCACTCAAGACAACCGAGAAGCGTAACGGCA
TTCGCCGTCGTCCTTTTGAAGAACGCCCAAACCCCGAGTACCGGCGCCTT
TTGGAGGATCGAGATGCGGCCTTGTTTGCAAGAGATGCCGCTCTTGTGAC
GAGAGATGAAGCTCTGCTCGAAAAGAAAACTGCTTTGTGTGAGAGAGAAA
GAGCCATTCAGCACCTTCATATGACAGAAAGTGAGAAGCAACGTGTTCTA
AACCTATGGCACGTTGCCAACATGCATAATTGCGAGCTCAAGCTCACTTT
GAGCAATGCCCAGTATGAGCTATCTCAAGGCCGGCAAAGAGAGCTTCTCC
TAAGTGATGAAAAAAATTCGTTACAAGAGGGCATGGAAGCTTTCGAGGAC
GAAAACCAGAAGCTTCGGGAGTTAGCGATGAGGAAGAGTGCAGTGATTGA
GGGTCACCTTGCGACTATCGTTAACCTCAACGCTCACATTACAAACATCT
CTCAAGTGAACATCACCATCGAGTCCCTGAAGCATGAGATTGCAGCCGAG
CAATGCAGGGTGGCACAACAACGAGCACAACTGGAAGCGTTTGAAAACTA
CGTTCGTGAAATGGAGCACGAACATGAGAGGCAATTGGGATGGTGCCACC
ATCATATCGAATCCCTTCATCAGCAACGTCAGGAGACGGAGACTGCTGTT
GCAAGCTTTTTGGGTAAACACCCAGAGTTACAGATCGATATTGCTCTCAT
GATGAAGGCCGATCGTGTCCAGGCGGC

Coding sequence (CDS) from alignment at NODE_7559_length_895_cov_19.665423:69..895+

>Gcaud2431.t1 ID=Gcaud2431.t1|Name=Gcaud2431.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=827bp|location=Sequence derived from alignment at NODE_7559_length_895_cov_19.665423:69..895+ (Gracilaria caudata M_176_S67 male)
ATGAGCGAGAGCCAATCAAGTTCGAGCAAGGTGTTCAGCGGAAATCGCGA
AAGTGCAGGTTTATTATGCGCACTCAAGACAACCGAGAAGCGTAACGGCA
TTCGCCGTCGTCCTTTTGAAGAACGCCCAAACCCCGAGTACCGGCGCCTT
TTGGAGGATCGAGATGCGGCCTTGTTTGCAAGAGATGCCGCTCTTGTGAC
GAGAGATGAAGCTCTGCTCGAAAAGAAAACTGCTTTGTGTGAGAGAGAAA
GAGCCATTCAGCACCTTCATATGACAGAAAGTGAGAAGCAACGTGTTCTA
AACCTATGGCACGTTGCCAACATGCATAATTGCGAGCTCAAGCTCACTTT
GAGCAATGCCCAGTATGAGCTATCTCAAGGCCGGCAAAGAGAGCTTCTCC
TAAGTGATGAAAAAAATTCGTTACAAGAGGGCATGGAAGCTTTCGAGGAC
GAAAACCAGAAGCTTCGGGAGTTAGCGATGAGGAAGAGTGCAGTGATTGA
GGGTCACCTTGCGACTATCGTTAACCTCAACGCTCACATTACAAACATCT
CTCAAGTGAACATCACCATCGAGTCCCTGAAGCATGAGATTGCAGCCGAG
CAATGCAGGGTGGCACAACAACGAGCACAACTGGAAGCGTTTGAAAACTA
CGTTCGTGAAATGGAGCACGAACATGAGAGGCAATTGGGATGGTGCCACC
ATCATATCGAATCCCTTCATCAGCAACGTCAGGAGACGGAGACTGCTGTT
GCAAGCTTTTTGGGTAAACACCCAGAGTTACAGATCGATATTGCTCTCAT
GATGAAGGCCGATCGTGTCCAGGCGGC