Gcaud2428.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2428.t1
Unique Name	Gcaud2428.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:27016..28284 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_85490
Preferred name	UTP23
PFAMs	Fcf1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14773
GOs	GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	1.66e-23
EggNOG OGs	COG1412@1\|root,KOG3164@2759\|Eukaryota
Description	Rrna-processing protein utp23
COG category	T
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2428	Gcaud2428	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 27016..28284 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2428.t1.start1	Gcaud2428.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 27016..27018 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2428.t1.CDS1	Gcaud2428.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 27016..28284 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2428.t1.exon1	Gcaud2428.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 27016..28284 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2428.t1.stop1	Gcaud2428.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 28282..28284 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2428.t1	Gcaud2428.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 27016..28284 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:27016..28284+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:27016..28284+

mRNA sequence

>Gcaud2428.t1 ID=Gcaud2428.t1|Name=Gcaud2428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp
MPRTKGRTSQNRKILSFFRVNFEYLPPYHVLCDGDMIYQSLKNDMYLKQS
LSNILNASAQPAITNCVLEDLRGRGSEFSNAALFAKRTTRLPCAHEEKLE
VTECLLQRLQTTSEKKLMIAAANVDLLKKLTRIPGIPLISIFNQTKLVLR
PPNRITLNYVRDYEKIKTQNISQTDKSLLERIKADGRAKRPERTTIRKKR
KAKGPNPLSVKKSTKHSTKRADDPIPKEVQENGELPHTLSAAPSLEVSTF
SDSVSAQQRTPKHGKRKRGKRRAGSKQNGVGEDECTPPPRKARRKQLVPV
SNIVEDQPMNAIEGHGVRSKESPGADMVSSGVEISGDRTLTQAPREEGQV
TNLAPSSIGANALTLSKSKTQDQVVSDENEQEGWKETNACIRAVQVGVAE
EGQPNKRKKQRKNRRRRPSKKQ*

spliced messenger RNA

>Gcaud2428.t1 ID=Gcaud2428.t1|Name=Gcaud2428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:27016..28284+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGTACCAAAGGAAGAACCAGTCAGAATCGGAAGATTCTGTCGTT
CTTTCGCGTCAATTTTGAGTATTTGCCGCCTTATCACGTCTTGTGTGATG
GCGACATGATTTATCAATCCCTGAAGAACGACATGTATCTCAAGCAATCT
TTGTCAAACATCTTGAACGCTTCTGCGCAACCTGCGATCACAAACTGTGT
TCTCGAAGATTTGCGAGGCAGAGGTTCAGAATTTTCCAACGCCGCTCTAT
TTGCGAAACGAACAACTCGGTTGCCTTGTGCCCACGAAGAGAAGCTCGAA
GTTACAGAATGTCTGTTGCAGAGGTTACAAACGACTTCAGAGAAGAAGCT
CATGATTGCAGCCGCGAATGTGGATCTTCTGAAGAAGCTCACGCGCATCC
CAGGCATTCCTCTTATATCCATATTCAATCAAACGAAACTTGTGCTAAGA
CCCCCGAACAGAATTACTTTGAATTATGTACGAGACTACGAGAAAATCAA
AACACAAAACATCAGTCAAACAGATAAATCTCTTCTTGAGCGAATCAAAG
CTGATGGAAGGGCAAAAAGACCCGAACGGACAACTATCAGAAAGAAGCGA
AAGGCTAAAGGTCCAAACCCTCTCAGCGTCAAGAAGTCCACAAAACACTC
TACAAAACGAGCAGATGACCCAATACCAAAGGAAGTACAGGAAAATGGCG
AATTACCACATACCCTTTCCGCTGCACCCAGCTTAGAAGTGAGTACGTTT
TCTGATTCAGTTTCAGCGCAACAGCGTACGCCCAAGCATGGGAAGCGAAA
ACGAGGAAAGCGGAGGGCTGGGAGCAAACAAAATGGAGTAGGCGAAGACG
AGTGTACCCCTCCACCCAGGAAAGCAAGGCGGAAGCAACTTGTGCCCGTT
TCGAACATCGTTGAGGATCAACCCATGAACGCGATAGAAGGACATGGCGT
ACGGAGCAAAGAAAGTCCTGGCGCGGATATGGTTTCCTCTGGTGTTGAAA
TCAGTGGCGATAGAACCTTGACGCAAGCGCCACGGGAAGAAGGTCAAGTC
ACGAATTTGGCCCCGAGTTCCATCGGGGCGAATGCGCTTACTCTTTCTAA
ATCGAAGACTCAGGATCAAGTAGTTTCCGATGAAAACGAACAAGAGGGTT
GGAAAGAGACGAATGCATGTATTCGAGCGGTCCAAGTGGGTGTAGCTGAA
GAAGGGCAGCCAAACAAGCGGAAAAAACAGCGAAAGAATCGCAGAAGACG
GCCTTCAAAGAAACAATAA

protein sequence of Gcaud2428.t1

>Gcaud2428.t1 ID=Gcaud2428.t1|Name=Gcaud2428.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MPRTKGRTSQNRKILSFFRVNFEYLPPYHVLCDGDMIYQSLKNDMYLKQS
LSNILNASAQPAITNCVLEDLRGRGSEFSNAALFAKRTTRLPCAHEEKLE
VTECLLQRLQTTSEKKLMIAAANVDLLKKLTRIPGIPLISIFNQTKLVLR
PPNRITLNYVRDYEKIKTQNISQTDKSLLERIKADGRAKRPERTTIRKKR
KAKGPNPLSVKKSTKHSTKRADDPIPKEVQENGELPHTLSAAPSLEVSTF
SDSVSAQQRTPKHGKRKRGKRRAGSKQNGVGEDECTPPPRKARRKQLVPV
SNIVEDQPMNAIEGHGVRSKESPGADMVSSGVEISGDRTLTQAPREEGQV
TNLAPSSIGANALTLSKSKTQDQVVSDENEQEGWKETNACIRAVQVGVAE
EGQPNKRKKQRKNRRRRPSKKQ*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:27016..28284+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2428.t1 ID=Gcaud2428.t1|Name=Gcaud2428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:27016..28284+ (Gracilaria caudata M_176_S67 male)
ATGCCTCGTACCAAAGGAAGAACCAGTCAGAATCGGAAGATTCTGTCGTT
CTTTCGCGTCAATTTTGAGTATTTGCCGCCTTATCACGTCTTGTGTGATG
GCGACATGATTTATCAATCCCTGAAGAACGACATGTATCTCAAGCAATCT
TTGTCAAACATCTTGAACGCTTCTGCGCAACCTGCGATCACAAACTGTGT
TCTCGAAGATTTGCGAGGCAGAGGTTCAGAATTTTCCAACGCCGCTCTAT
TTGCGAAACGAACAACTCGGTTGCCTTGTGCCCACGAAGAGAAGCTCGAA
GTTACAGAATGTCTGTTGCAGAGGTTACAAACGACTTCAGAGAAGAAGCT
CATGATTGCAGCCGCGAATGTGGATCTTCTGAAGAAGCTCACGCGCATCC
CAGGCATTCCTCTTATATCCATATTCAATCAAACGAAACTTGTGCTAAGA
CCCCCGAACAGAATTACTTTGAATTATGTACGAGACTACGAGAAAATCAA
AACACAAAACATCAGTCAAACAGATAAATCTCTTCTTGAGCGAATCAAAG
CTGATGGAAGGGCAAAAAGACCCGAACGGACAACTATCAGAAAGAAGCGA
AAGGCTAAAGGTCCAAACCCTCTCAGCGTCAAGAAGTCCACAAAACACTC
TACAAAACGAGCAGATGACCCAATACCAAAGGAAGTACAGGAAAATGGCG
AATTACCACATACCCTTTCCGCTGCACCCAGCTTAGAAGTGAGTACGTTT
TCTGATTCAGTTTCAGCGCAACAGCGTACGCCCAAGCATGGGAAGCGAAA
ACGAGGAAAGCGGAGGGCTGGGAGCAAACAAAATGGAGTAGGCGAAGACG
AGTGTACCCCTCCACCCAGGAAAGCAAGGCGGAAGCAACTTGTGCCCGTT
TCGAACATCGTTGAGGATCAACCCATGAACGCGATAGAAGGACATGGCGT
ACGGAGCAAAGAAAGTCCTGGCGCGGATATGGTTTCCTCTGGTGTTGAAA
TCAGTGGCGATAGAACCTTGACGCAAGCGCCACGGGAAGAAGGTCAAGTC
ACGAATTTGGCCCCGAGTTCCATCGGGGCGAATGCGCTTACTCTTTCTAA
ATCGAAGACTCAGGATCAAGTAGTTTCCGATGAAAACGAACAAGAGGGTT
GGAAAGAGACGAATGCATGTATTCGAGCGGTCCAAGTGGGTGTAGCTGAA
GAAGGGCAGCCAAACAAGCGGAAAAAACAGCGAAAGAATCGCAGAAGACG
GCCTTCAAAGAAACAATAA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:27016..28284+

>Gcaud2428.t1 ID=Gcaud2428.t1|Name=Gcaud2428.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1269bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:27016..28284+ (Gracilaria caudata M_176_S67 male)
ATGCCTCGTACCAAAGGAAGAACCAGTCAGAATCGGAAGATTCTGTCGTT
CTTTCGCGTCAATTTTGAGTATTTGCCGCCTTATCACGTCTTGTGTGATG
GCGACATGATTTATCAATCCCTGAAGAACGACATGTATCTCAAGCAATCT
TTGTCAAACATCTTGAACGCTTCTGCGCAACCTGCGATCACAAACTGTGT
TCTCGAAGATTTGCGAGGCAGAGGTTCAGAATTTTCCAACGCCGCTCTAT
TTGCGAAACGAACAACTCGGTTGCCTTGTGCCCACGAAGAGAAGCTCGAA
GTTACAGAATGTCTGTTGCAGAGGTTACAAACGACTTCAGAGAAGAAGCT
CATGATTGCAGCCGCGAATGTGGATCTTCTGAAGAAGCTCACGCGCATCC
CAGGCATTCCTCTTATATCCATATTCAATCAAACGAAACTTGTGCTAAGA
CCCCCGAACAGAATTACTTTGAATTATGTACGAGACTACGAGAAAATCAA
AACACAAAACATCAGTCAAACAGATAAATCTCTTCTTGAGCGAATCAAAG
CTGATGGAAGGGCAAAAAGACCCGAACGGACAACTATCAGAAAGAAGCGA
AAGGCTAAAGGTCCAAACCCTCTCAGCGTCAAGAAGTCCACAAAACACTC
TACAAAACGAGCAGATGACCCAATACCAAAGGAAGTACAGGAAAATGGCG
AATTACCACATACCCTTTCCGCTGCACCCAGCTTAGAAGTGAGTACGTTT
TCTGATTCAGTTTCAGCGCAACAGCGTACGCCCAAGCATGGGAAGCGAAA
ACGAGGAAAGCGGAGGGCTGGGAGCAAACAAAATGGAGTAGGCGAAGACG
AGTGTACCCCTCCACCCAGGAAAGCAAGGCGGAAGCAACTTGTGCCCGTT
TCGAACATCGTTGAGGATCAACCCATGAACGCGATAGAAGGACATGGCGT
ACGGAGCAAAGAAAGTCCTGGCGCGGATATGGTTTCCTCTGGTGTTGAAA
TCAGTGGCGATAGAACCTTGACGCAAGCGCCACGGGAAGAAGGTCAAGTC
ACGAATTTGGCCCCGAGTTCCATCGGGGCGAATGCGCTTACTCTTTCTAA
ATCGAAGACTCAGGATCAAGTAGTTTCCGATGAAAACGAACAAGAGGGTT
GGAAAGAGACGAATGCATGTATTCGAGCGGTCCAAGTGGGTGTAGCTGAA
GAAGGGCAGCCAAACAAGCGGAAAAAACAGCGAAAGAATCGCAGAAGACG
GCCTTCAAAGAAACAATAA