Gcaud2423.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2423.t1
Unique NameGcaud2423.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:18494..19174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2423Gcaud2423Gracilaria caudata M_176_S67 malegeneNODE_295_length_31939_cov_4.445679 18494..19663 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2423.t1.stop1Gcaud2423.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_295_length_31939_cov_4.445679 18494..18496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2423.t1.CDS1Gcaud2423.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 18494..19174 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2423.t1.exon1Gcaud2423.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 18494..19174 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2423.t1.start1Gcaud2423.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_295_length_31939_cov_4.445679 19172..19174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2423.t1Gcaud2423.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_295_length_31939_cov_4.445679 18494..19174 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2423.t1 ID=Gcaud2423.t1|Name=Gcaud2423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=227bp
LYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPRVSTEDFI
ALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEY
TQNIMLVWEERFRNFDSFKERANKLFEEFQGGMKSCQSTGRKFSKLDASV
DRLVIRFGNIERITAKLNAKIDGHKATEARFDDKEPVVGDKIKGTFAPVP
YTLPRNSRYKQQTAGRSSPRAKRRRS*
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spliced messenger RNA

>Gcaud2423.t1 ID=Gcaud2423.t1|Name=Gcaud2423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:18494..19174- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTATACACTTGATTACGACTCCCTCGACAGTTATCGACTTGGATCTGG
AAGGACCCCGGATGGTGAGACGCTTGATGTCCCGAACTCTCAGCATCCCA
AACCTCAGCGTGATGGAGAGGAACCGCGTGTGTCAACGGAAGACTTCATT
GCCCTTGACACATATGTTACTGATCTCGGTAAGGCGGTGAATAAGCAAAC
TGATGCTATGGATCAGTACGGCAAGGCTCTTGAAGAACTGCAAAAGGACT
TCAAGGACTCTGACAATTTGATGAAAGACATTCGTCAGTGTCTTGAATAC
ACACAGAATATAATGTTAGTCTGGGAAGAGAGGTTCAGAAACTTTGATTC
CTTTAAGGAGAGAGCAAATAAGTTATTCGAAGAGTTTCAGGGTGGTATGA
AGAGTTGTCAAAGCACGGGACGGAAATTCTCGAAACTTGACGCTAGTGTC
GATAGACTCGTGATCCGTTTTGGCAACATAGAGCGCATAACAGCGAAACT
CAATGCCAAGATCGATGGACACAAAGCCACGGAAGCGCGTTTTGACGACA
AGGAACCTGTAGTAGGCGACAAAATCAAAGGCACATTCGCACCTGTTCCT
TACACTCTTCCCAGGAATAGCAGGTATAAACAACAAACAGCGGGAAGATC
TTCACCAAGAGCCAAGCGGCGACGCTCATGA
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protein sequence of Gcaud2423.t1

>Gcaud2423.t1 ID=Gcaud2423.t1|Name=Gcaud2423.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
LYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPRVSTEDFI
ALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEY
TQNIMLVWEERFRNFDSFKERANKLFEEFQGGMKSCQSTGRKFSKLDASV
DRLVIRFGNIERITAKLNAKIDGHKATEARFDDKEPVVGDKIKGTFAPVP
YTLPRNSRYKQQTAGRSSPRAKRRRS*
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mRNA from alignment at NODE_295_length_31939_cov_4.445679:18494..19174-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2423.t1 ID=Gcaud2423.t1|Name=Gcaud2423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:18494..19174- (Gracilaria caudata M_176_S67 male)
TTGTATACACTTGATTACGACTCCCTCGACAGTTATCGACTTGGATCTGG
AAGGACCCCGGATGGTGAGACGCTTGATGTCCCGAACTCTCAGCATCCCA
AACCTCAGCGTGATGGAGAGGAACCGCGTGTGTCAACGGAAGACTTCATT
GCCCTTGACACATATGTTACTGATCTCGGTAAGGCGGTGAATAAGCAAAC
TGATGCTATGGATCAGTACGGCAAGGCTCTTGAAGAACTGCAAAAGGACT
TCAAGGACTCTGACAATTTGATGAAAGACATTCGTCAGTGTCTTGAATAC
ACACAGAATATAATGTTAGTCTGGGAAGAGAGGTTCAGAAACTTTGATTC
CTTTAAGGAGAGAGCAAATAAGTTATTCGAAGAGTTTCAGGGTGGTATGA
AGAGTTGTCAAAGCACGGGACGGAAATTCTCGAAACTTGACGCTAGTGTC
GATAGACTCGTGATCCGTTTTGGCAACATAGAGCGCATAACAGCGAAACT
CAATGCCAAGATCGATGGACACAAAGCCACGGAAGCGCGTTTTGACGACA
AGGAACCTGTAGTAGGCGACAAAATCAAAGGCACATTCGCACCTGTTCCT
TACACTCTTCCCAGGAATAGCAGGTATAAACAACAAACAGCGGGAAGATC
TTCACCAAGAGCCAAGCGGCGACGCTCATGA
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Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:18494..19174-

>Gcaud2423.t1 ID=Gcaud2423.t1|Name=Gcaud2423.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=681bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:18494..19174- (Gracilaria caudata M_176_S67 male)
TTGTATACACTTGATTACGACTCCCTCGACAGTTATCGACTTGGATCTGG
AAGGACCCCGGATGGTGAGACGCTTGATGTCCCGAACTCTCAGCATCCCA
AACCTCAGCGTGATGGAGAGGAACCGCGTGTGTCAACGGAAGACTTCATT
GCCCTTGACACATATGTTACTGATCTCGGTAAGGCGGTGAATAAGCAAAC
TGATGCTATGGATCAGTACGGCAAGGCTCTTGAAGAACTGCAAAAGGACT
TCAAGGACTCTGACAATTTGATGAAAGACATTCGTCAGTGTCTTGAATAC
ACACAGAATATAATGTTAGTCTGGGAAGAGAGGTTCAGAAACTTTGATTC
CTTTAAGGAGAGAGCAAATAAGTTATTCGAAGAGTTTCAGGGTGGTATGA
AGAGTTGTCAAAGCACGGGACGGAAATTCTCGAAACTTGACGCTAGTGTC
GATAGACTCGTGATCCGTTTTGGCAACATAGAGCGCATAACAGCGAAACT
CAATGCCAAGATCGATGGACACAAAGCCACGGAAGCGCGTTTTGACGACA
AGGAACCTGTAGTAGGCGACAAAATCAAAGGCACATTCGCACCTGTTCCT
TACACTCTTCCCAGGAATAGCAGGTATAAACAACAAACAGCGGGAAGATC
TTCACCAAGAGCCAAGCGGCGACGCTCATGA
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