Gcaud2422.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2422.t1
Unique Name	Gcaud2422.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:17080..18429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDO99514
PFAMs	Peptidase_M24
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K01265
Evalue	2.05e-186
EggNOG OGs	COG0024@1\|root,KOG2775@2759\|Eukaryota,37JYE@33090\|Viridiplantae,34H91@3041\|Chlorophyta
EC	3.4.11.18
Description	Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)
COG category	J
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2422	Gcaud2422	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 17080..18429 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2422.t1.start1	Gcaud2422.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 17080..17082 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2422.t1.CDS1	Gcaud2422.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 17080..18429 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2422.t1.exon1	Gcaud2422.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 17080..18429 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2422.t1.stop1	Gcaud2422.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 18427..18429 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2422.t1	Gcaud2422.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 17080..18429 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:17080..18429+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:17080..18429+

mRNA sequence

>Gcaud2422.t1 ID=Gcaud2422.t1|Name=Gcaud2422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MADTAVEPPSLAEDLSRLNTVAESGCTDEQKKVQNGHKAEEEVDRDAEVS
EVKKKKRKKKKKKKKTGNTEAEDQGNSESKAADMKQTDPPSIPVSYFYPS
GGFRVGELHEYIDANSYRTTSAEMRDRERIEEDLYDSVREAAEVHRQVRK
YMKNYIKPGVRLIDMCERLENANRALVGAKDGDLSRGIAFPTGCSLNHVA
AHYTPNKGDNTVLEYDDVMKVDFGTQINGRIIDCAWTVHFNPKYDPLVEG
VKAATEAGIKAAGIDVRLCDVGAAVQEVMESHEVELDGKTYPVKSIRNLH
GHSIGPYQIHAGKSVPIVRGGEQIKMEEGEFYAIETFGSTGKGFVIEDME
CSHYMKDFNAPRVNLRSGKARSLLTTIDKNFGTLAFCRRFLDRLGEEKYL
MGLKALVDNGIVNPYPPLCDQKGCYTAQFEHTLVLKPTRKEVLSRGEDF*

spliced messenger RNA

>Gcaud2422.t1 ID=Gcaud2422.t1|Name=Gcaud2422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:17080..18429+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATACGGCGGTTGAGCCCCCTTCACTAGCGGAAGACCTGTCGCG
ATTGAATACTGTTGCGGAATCTGGATGCACCGATGAACAAAAAAAGGTAC
AAAACGGCCACAAGGCAGAAGAAGAGGTTGACAGAGATGCCGAGGTCAGC
GAGGTAAAGaagaagaagagaaagaagaaaaagaagaaaaagaaaacagg
aaACACCGAAGCCGAAGATCAGGGGAACTCGGAAAGCAAAGCAGCTGACA
TGAAACAAACAGATCCACCTTCTATTCCTGTGTCATACTTCTATCCTAGC
GGCGGATTTCGTGTGGGGGAACTGCATGAATATATTGATGCTAATTCGTA
TCGGACTACATCGGCAGAAATGCGTGACAGGGAGAGAATTGAAGAAGACT
TGTACGACTCCGTAAGAGAGGCAGCGGAGGTGCACCGTCAGGTTAGGAAG
TACATGAAAAACTACATCAAGCCCGGGGTCAGACTTATTGATATGTGTGA
GCGCCTCGAGAACGCCAATCGCGCCCTCGTTGGAGCAAAAGATGGAGATT
TGTCACGTGGAATCGCTTTCCCGACAGGATGCTCCCTGAATCATGTCGCC
GCCCATTACACTCCGAATAAGGGTGATAACACGGTTCTGGAATACGACGA
TGTCATGAAGGTAGATTTCGGAACTCAAATTAACGGGAGAATCATTGACT
GCGCCTGGACTGTGCACTTCAATCCGAAATACGACCCACTTGTTGAAGGT
GTTAAAGCCGCCACCGAGGCTGGTATAAAAGCTGCGGGCATAGATGTCCG
GTTATGCGATGTTGGAGCCGCAGTGCAAGAAGTAATGGAGAGCCATGAAG
TAGAGCTGGATGGAAAGACCTACCCCGTGAAATCAATTCGCAACCTTCAC
GGTCACAGCATCGGTCCATACCAAATTCATGCTGGCAAAAGCGTCCCCAT
TGTTCGTGGGGGCGAGCAAATCAAAATGGAGGAAGGAGAATTCTACGCTA
TCGAAACGTTCGGCTCTACGGGCAAGGGGTTTGTCATTGAAGACATGGAG
TGCAGTCATTATATGAAAGACTTTAATGCCCCTCGAGTGAACCTACGATC
CGGCAAGGCCCGCTCATTGCTTACTACCATTGACAAGAACTTTGGAACGC
TGGCTTTCTGCCGACGCTTCCTAGATCGACTTGGAGAAGAGAAATATCTC
ATGGGTCTGAAGGCGCTTGTGGACAATGGAATTGTGAATCCTTACCCGCC
ACTTTGCGATCAAAAGGGGTGTTACACAGCGCAATTCGAACATACTTTGG
TCTTGAAGCCAACCCGAAAGGAAGTCTTGTCCCGTGGTGAGGATTTCTGA

protein sequence of Gcaud2422.t1

>Gcaud2422.t1 ID=Gcaud2422.t1|Name=Gcaud2422.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MADTAVEPPSLAEDLSRLNTVAESGCTDEQKKVQNGHKAEEEVDRDAEVS
EVKKKKRKKKKKKKKTGNTEAEDQGNSESKAADMKQTDPPSIPVSYFYPS
GGFRVGELHEYIDANSYRTTSAEMRDRERIEEDLYDSVREAAEVHRQVRK
YMKNYIKPGVRLIDMCERLENANRALVGAKDGDLSRGIAFPTGCSLNHVA
AHYTPNKGDNTVLEYDDVMKVDFGTQINGRIIDCAWTVHFNPKYDPLVEG
VKAATEAGIKAAGIDVRLCDVGAAVQEVMESHEVELDGKTYPVKSIRNLH
GHSIGPYQIHAGKSVPIVRGGEQIKMEEGEFYAIETFGSTGKGFVIEDME
CSHYMKDFNAPRVNLRSGKARSLLTTIDKNFGTLAFCRRFLDRLGEEKYL
MGLKALVDNGIVNPYPPLCDQKGCYTAQFEHTLVLKPTRKEVLSRGEDF*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:17080..18429+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2422.t1 ID=Gcaud2422.t1|Name=Gcaud2422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:17080..18429+ (Gracilaria caudata M_176_S67 male)
ATGGCTGATACGGCGGTTGAGCCCCCTTCACTAGCGGAAGACCTGTCGCG
ATTGAATACTGTTGCGGAATCTGGATGCACCGATGAACAAAAAAAGGTAC
AAAACGGCCACAAGGCAGAAGAAGAGGTTGACAGAGATGCCGAGGTCAGC
GAGGTAAAGaagaagaagagaaagaagaaaaagaagaaaaagaaaacagg
aaACACCGAAGCCGAAGATCAGGGGAACTCGGAAAGCAAAGCAGCTGACA
TGAAACAAACAGATCCACCTTCTATTCCTGTGTCATACTTCTATCCTAGC
GGCGGATTTCGTGTGGGGGAACTGCATGAATATATTGATGCTAATTCGTA
TCGGACTACATCGGCAGAAATGCGTGACAGGGAGAGAATTGAAGAAGACT
TGTACGACTCCGTAAGAGAGGCAGCGGAGGTGCACCGTCAGGTTAGGAAG
TACATGAAAAACTACATCAAGCCCGGGGTCAGACTTATTGATATGTGTGA
GCGCCTCGAGAACGCCAATCGCGCCCTCGTTGGAGCAAAAGATGGAGATT
TGTCACGTGGAATCGCTTTCCCGACAGGATGCTCCCTGAATCATGTCGCC
GCCCATTACACTCCGAATAAGGGTGATAACACGGTTCTGGAATACGACGA
TGTCATGAAGGTAGATTTCGGAACTCAAATTAACGGGAGAATCATTGACT
GCGCCTGGACTGTGCACTTCAATCCGAAATACGACCCACTTGTTGAAGGT
GTTAAAGCCGCCACCGAGGCTGGTATAAAAGCTGCGGGCATAGATGTCCG
GTTATGCGATGTTGGAGCCGCAGTGCAAGAAGTAATGGAGAGCCATGAAG
TAGAGCTGGATGGAAAGACCTACCCCGTGAAATCAATTCGCAACCTTCAC
GGTCACAGCATCGGTCCATACCAAATTCATGCTGGCAAAAGCGTCCCCAT
TGTTCGTGGGGGCGAGCAAATCAAAATGGAGGAAGGAGAATTCTACGCTA
TCGAAACGTTCGGCTCTACGGGCAAGGGGTTTGTCATTGAAGACATGGAG
TGCAGTCATTATATGAAAGACTTTAATGCCCCTCGAGTGAACCTACGATC
CGGCAAGGCCCGCTCATTGCTTACTACCATTGACAAGAACTTTGGAACGC
TGGCTTTCTGCCGACGCTTCCTAGATCGACTTGGAGAAGAGAAATATCTC
ATGGGTCTGAAGGCGCTTGTGGACAATGGAATTGTGAATCCTTACCCGCC
ACTTTGCGATCAAAAGGGGTGTTACACAGCGCAATTCGAACATACTTTGG
TCTTGAAGCCAACCCGAAAGGAAGTCTTGTCCCGTGGTGAGGATTTCTGA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:17080..18429+

>Gcaud2422.t1 ID=Gcaud2422.t1|Name=Gcaud2422.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:17080..18429+ (Gracilaria caudata M_176_S67 male)
ATGGCTGATACGGCGGTTGAGCCCCCTTCACTAGCGGAAGACCTGTCGCG
ATTGAATACTGTTGCGGAATCTGGATGCACCGATGAACAAAAAAAGGTAC
AAAACGGCCACAAGGCAGAAGAAGAGGTTGACAGAGATGCCGAGGTCAGC
GAGGTAAAGaagaagaagagaaagaagaaaaagaagaaaaagaaaacagg
aaACACCGAAGCCGAAGATCAGGGGAACTCGGAAAGCAAAGCAGCTGACA
TGAAACAAACAGATCCACCTTCTATTCCTGTGTCATACTTCTATCCTAGC
GGCGGATTTCGTGTGGGGGAACTGCATGAATATATTGATGCTAATTCGTA
TCGGACTACATCGGCAGAAATGCGTGACAGGGAGAGAATTGAAGAAGACT
TGTACGACTCCGTAAGAGAGGCAGCGGAGGTGCACCGTCAGGTTAGGAAG
TACATGAAAAACTACATCAAGCCCGGGGTCAGACTTATTGATATGTGTGA
GCGCCTCGAGAACGCCAATCGCGCCCTCGTTGGAGCAAAAGATGGAGATT
TGTCACGTGGAATCGCTTTCCCGACAGGATGCTCCCTGAATCATGTCGCC
GCCCATTACACTCCGAATAAGGGTGATAACACGGTTCTGGAATACGACGA
TGTCATGAAGGTAGATTTCGGAACTCAAATTAACGGGAGAATCATTGACT
GCGCCTGGACTGTGCACTTCAATCCGAAATACGACCCACTTGTTGAAGGT
GTTAAAGCCGCCACCGAGGCTGGTATAAAAGCTGCGGGCATAGATGTCCG
GTTATGCGATGTTGGAGCCGCAGTGCAAGAAGTAATGGAGAGCCATGAAG
TAGAGCTGGATGGAAAGACCTACCCCGTGAAATCAATTCGCAACCTTCAC
GGTCACAGCATCGGTCCATACCAAATTCATGCTGGCAAAAGCGTCCCCAT
TGTTCGTGGGGGCGAGCAAATCAAAATGGAGGAAGGAGAATTCTACGCTA
TCGAAACGTTCGGCTCTACGGGCAAGGGGTTTGTCATTGAAGACATGGAG
TGCAGTCATTATATGAAAGACTTTAATGCCCCTCGAGTGAACCTACGATC
CGGCAAGGCCCGCTCATTGCTTACTACCATTGACAAGAACTTTGGAACGC
TGGCTTTCTGCCGACGCTTCCTAGATCGACTTGGAGAAGAGAAATATCTC
ATGGGTCTGAAGGCGCTTGTGGACAATGGAATTGTGAATCCTTACCCGCC
ACTTTGCGATCAAAAGGGGTGTTACACAGCGCAATTCGAACATACTTTGG
TCTTGAAGCCAACCCGAAAGGAAGTCTTGTCCCGTGGTGAGGATTTCTGA