Gcaud242.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud242.t1
Unique Name	Gcaud242.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	229

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_8859_length_688_cov_5.492462	contig	NODE_8859_length_688_cov_5.492462:2..688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6183.Smp_128960.1
Preferred name	TAF2
PFAMs	Peptidase_M1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03128
KEGG Pathway	ko03022,map03022
GOs	GO:0000086,GO:0000123,GO:0000278,GO:0000428,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001129,GO:0001132,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033276,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044798,GO:0044839,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Evalue	1.14e-11
EggNOG OGs	KOG1932@1\|root,KOG1932@2759\|Eukaryota,38BC9@33154\|Opisthokonta,3BGXN@33208\|Metazoa,3CTF4@33213\|Bilateria
Description	obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
COG category	K
BRITE	ko00000,ko00001,ko01002,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud242	Gcaud242	Gracilaria caudata M_176_S67 male	gene	NODE_8859_length_688_cov_5.492462 2..688 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud242.t1.CDS1	Gcaud242.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_8859_length_688_cov_5.492462 2..688 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud242.t1.exon1	Gcaud242.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_8859_length_688_cov_5.492462 2..688 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud242.t1	Gcaud242.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_8859_length_688_cov_5.492462 2..688 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_8859_length_688_cov_5.492462:2..688+
coding sequence from alignment at NODE_8859_length_688_cov_5.492462:2..688+

mRNA sequence

>Gcaud242.t1 ID=Gcaud242.t1|Name=Gcaud242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=229bp
MTYSGRFLRPRLLEDDWLITGLAAHVAALGLQTILGRNWYTFRIWDIMEQ
LRNEPSLDLADSNLDRITDSSRATIRKRSHMIVYMIAKRIGGDVLKRALR
DIVAEGRSAVIAAVSKTDAILTTPSKCSFNSTSQARTPFRRRLTDLINAN
LDSGQNHSVVTSGFDDAIQGVGVGPFLKRIRGIIGTDVRNMVRQWASHPG
IPRLQVAYHYNARKHTIELAIKQDSAGHG

spliced messenger RNA

>Gcaud242.t1 ID=Gcaud242.t1|Name=Gcaud242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_8859_length_688_cov_5.492462:2..688+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATACAGCGGAAGATTTCTTCGGCCTCGACTCCTTGAAGACGACTG
GCTCATAACAGGGCTGGCAGCCCATGTTGCAGCACTGGGATTGCAGACCA
TCCTTGGTAGGAACTGGTACACGTTCCGAATATGGGATATCATGGAACAA
CTAAGAAATGAACCATCCCTTGACCTTGCAGATTCCAATCTCGATCGAAT
CACGGACTCCTCTCGTGCCACTATTCGCAAACGCTCTCATATGATCGTTT
ACATGATTGCGAAAAGAATCGGCGGAGACGTGTTGAAACGAGCGTTGCGT
GATATTGTTGCTGAAGGTCGCAGCGCAGTCATAGCGGCTGTTTCTAAGAC
TGACGCAATTTTGACAACTCCCTCAAAGTGCTCTTTTAACTCCACCTCTC
AAGCACGAACCCCTTTCCGTCGAAGGCTCACTGACTTGATAAATGCTAAT
TTAGATTCTGGTCAGAACCATAGCGTCGTCACTAGCGGGTTTGATGATGC
GATCCAAGGGGTTGGTGTTGGGCCGTTTTTGAAACGGATACGAGGTATCA
TTGGTACCGACGTGCGAAATATGGTGAGACAATGGGCGTCACATCCCGGA
ATACCCAGACTTCAAGTCGCTTATCACTATAACGCAAGAAAGCATACCAT
CGAGCTCGCAATCAAGCAAGATAGTGCAGGACATGGG

protein sequence of Gcaud242.t1

>Gcaud242.t1 ID=Gcaud242.t1|Name=Gcaud242.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
MTYSGRFLRPRLLEDDWLITGLAAHVAALGLQTILGRNWYTFRIWDIMEQ
LRNEPSLDLADSNLDRITDSSRATIRKRSHMIVYMIAKRIGGDVLKRALR
DIVAEGRSAVIAAVSKTDAILTTPSKCSFNSTSQARTPFRRRLTDLINAN
LDSGQNHSVVTSGFDDAIQGVGVGPFLKRIRGIIGTDVRNMVRQWASHPG
IPRLQVAYHYNARKHTIELAIKQDSAGHG

mRNA from alignment at NODE_8859_length_688_cov_5.492462:2..688+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud242.t1 ID=Gcaud242.t1|Name=Gcaud242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_8859_length_688_cov_5.492462:2..688+ (Gracilaria caudata M_176_S67 male)
ATGACATACAGCGGAAGATTTCTTCGGCCTCGACTCCTTGAAGACGACTG
GCTCATAACAGGGCTGGCAGCCCATGTTGCAGCACTGGGATTGCAGACCA
TCCTTGGTAGGAACTGGTACACGTTCCGAATATGGGATATCATGGAACAA
CTAAGAAATGAACCATCCCTTGACCTTGCAGATTCCAATCTCGATCGAAT
CACGGACTCCTCTCGTGCCACTATTCGCAAACGCTCTCATATGATCGTTT
ACATGATTGCGAAAAGAATCGGCGGAGACGTGTTGAAACGAGCGTTGCGT
GATATTGTTGCTGAAGGTCGCAGCGCAGTCATAGCGGCTGTTTCTAAGAC
TGACGCAATTTTGACAACTCCCTCAAAGTGCTCTTTTAACTCCACCTCTC
AAGCACGAACCCCTTTCCGTCGAAGGCTCACTGACTTGATAAATGCTAAT
TTAGATTCTGGTCAGAACCATAGCGTCGTCACTAGCGGGTTTGATGATGC
GATCCAAGGGGTTGGTGTTGGGCCGTTTTTGAAACGGATACGAGGTATCA
TTGGTACCGACGTGCGAAATATGGTGAGACAATGGGCGTCACATCCCGGA
ATACCCAGACTTCAAGTCGCTTATCACTATAACGCAAGAAAGCATACCAT
CGAGCTCGCAATCAAGCAAGATAGTGCAGGACATGGG

Coding sequence (CDS) from alignment at NODE_8859_length_688_cov_5.492462:2..688+

>Gcaud242.t1 ID=Gcaud242.t1|Name=Gcaud242.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=687bp|location=Sequence derived from alignment at NODE_8859_length_688_cov_5.492462:2..688+ (Gracilaria caudata M_176_S67 male)
ATGACATACAGCGGAAGATTTCTTCGGCCTCGACTCCTTGAAGACGACTG
GCTCATAACAGGGCTGGCAGCCCATGTTGCAGCACTGGGATTGCAGACCA
TCCTTGGTAGGAACTGGTACACGTTCCGAATATGGGATATCATGGAACAA
CTAAGAAATGAACCATCCCTTGACCTTGCAGATTCCAATCTCGATCGAAT
CACGGACTCCTCTCGTGCCACTATTCGCAAACGCTCTCATATGATCGTTT
ACATGATTGCGAAAAGAATCGGCGGAGACGTGTTGAAACGAGCGTTGCGT
GATATTGTTGCTGAAGGTCGCAGCGCAGTCATAGCGGCTGTTTCTAAGAC
TGACGCAATTTTGACAACTCCCTCAAAGTGCTCTTTTAACTCCACCTCTC
AAGCACGAACCCCTTTCCGTCGAAGGCTCACTGACTTGATAAATGCTAAT
TTAGATTCTGGTCAGAACCATAGCGTCGTCACTAGCGGGTTTGATGATGC
GATCCAAGGGGTTGGTGTTGGGCCGTTTTTGAAACGGATACGAGGTATCA
TTGGTACCGACGTGCGAAATATGGTGAGACAATGGGCGTCACATCCCGGA
ATACCCAGACTTCAAGTCGCTTATCACTATAACGCAAGAAAGCATACCAT
CGAGCTCGCAATCAAGCAAGATAGTGCAGGACATGGG