Gcaud2418.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2418.t1
Unique Name	Gcaud2418.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:10568..11653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ25968
PFAMs	AAA
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13525
KEGG TC	3.A.16.1
KEGG Pathway	ko04141,ko05134,map04141,map05134
KEGG Module	M00400,M00403
Evalue	8.3e-89
EggNOG OGs	COG0464@1\|root,KOG0730@2759\|Eukaryota,37RDE@33090\|Viridiplantae,3GAEN@35493\|Streptophyta
Description	Belongs to the AAA ATPase family
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03019,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2418	Gcaud2418	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 10568..11653 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2418.t1.start1	Gcaud2418.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 10568..10570 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2418.t1.CDS1	Gcaud2418.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 10568..11653 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2418.t1.exon1	Gcaud2418.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 10568..11653 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2418.t1.stop1	Gcaud2418.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 11651..11653 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2418.t1	Gcaud2418.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 10568..11653 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:10568..11653+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:10568..11653+

mRNA sequence

>Gcaud2418.t1 ID=Gcaud2418.t1|Name=Gcaud2418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
LLSAAVFHKHVELEPPSPPERLQFLSALLPDADPLVLRYVADHAAGFVAA
DLAALCTAASEAPGDQLNENIINAFKGATPSVLRSNTSAHVPETSWQDIG
GMRNVKRRLQMGVEWPLRYASTFGRLGLKAPRGILLYGPPGCSKTSLVRA
AASQSRAVFIHLSGADIYSCYLGEAERMLRDAFATARAAKPSILFLDEID
AIVGKRSTDGQVDGNGVQQRVLSTLLTEMDGIASADGVLVIGASNRVDLL
DDALLRPGRFDDILAVQLPDEGERLQILAIHTKPLSLHSDVDLAQLAHCT
SGYSGADLKAMCTEAGLAALREAHHEQHRFDSTHSLECFSKRSAHLVSMR
HFVIKEVENKC*

spliced messenger RNA

>Gcaud2418.t1 ID=Gcaud2418.t1|Name=Gcaud2418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:10568..11653+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTAGCGCTGCTGTCTTCCACAAGCATGTTGAGCTCGAGCCGCCTTC
GCCGCCCGAGCGCTTGCAGTTTCTCTCCGCGCTGCTTCCGGACGCAGACC
CGCTGGTGCTGCGCTACGTTGCCGATCACGCCGCGGGATTCGTGGCTGCT
GACCTCGCTGCACTGTGCACCGCTGCGAGTGAGGCGCCCGGCGATCAGCT
GAACGAAAATATCATCAATGCATTCAAAGGTGCCACCCCGTCCGTGCTGC
GCAGTAATACCTCGGCGCACGTGCCCGAAACGTCATGGCAGGACATAGGC
GGTATGCGGAACGTCAAACGGCGCTTACAGATGGGTGTAGAGTGGCCTCT
GCGGTATGCATCCACTTTCGGCAGGTTGGGCCTCAAAGCGCCTCGCGGAA
TTCTACTGTACGGACCGCCAGGCTGCAGCAAGACGTCGCTGGTGCGCGCA
GCAGCTTCGCAGAGTCGCGCCGTTTTCATTCACCTCAGCGGTGCCGATAT
TTACTCCTGCTACCTGGGTGAGGCAGAGCGTATGCTGCGTGACGCGTTTG
CCACAGCCAGAGCCGCTAAGCCGAGTATTCTATTTCTGGATGAGATCGAT
GCAATCGTTGGGAAGCGCTCTACCGACGGGCAAGTAGATGGAAACGGTGT
GCAGCAACGTGTGTTAAGCACGCTTCTAACCGAAATGGACGGCATTGCAT
CAGCCGATGGCGTATTGGTTATTGGCGCTTCCAACCGCGTTGATTTACTC
GACGATGCATTGTTGAGACCTGGTAGATTTGACGACATATTGGCTGTTCA
ACTGCCAGATGAGGGAGAGAGATTGCAAATACTCGCCATTCATACCAAGC
CACTGTCTCTTCATTCAGATGTGGATTTGGCCCAGCTGGCGCACTGTACC
AGCGGCTACTCCGGCGCGGACCTAAAAGCCATGTGTACCGAAGCAGGTCT
TGCTGCTTTGCGAGAAGCTCACCATGAGCAACACAGATTCGATTCCACAC
ATTCTCTCGAGTGCTTTTCTAAACGCAGTGCACATTTGGTTAGCATGAGA
CATTTTGTTATCAAAGAAGTAGAAAACAAGTGCTAG

protein sequence of Gcaud2418.t1

>Gcaud2418.t1 ID=Gcaud2418.t1|Name=Gcaud2418.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
LLSAAVFHKHVELEPPSPPERLQFLSALLPDADPLVLRYVADHAAGFVAA
DLAALCTAASEAPGDQLNENIINAFKGATPSVLRSNTSAHVPETSWQDIG
GMRNVKRRLQMGVEWPLRYASTFGRLGLKAPRGILLYGPPGCSKTSLVRA
AASQSRAVFIHLSGADIYSCYLGEAERMLRDAFATARAAKPSILFLDEID
AIVGKRSTDGQVDGNGVQQRVLSTLLTEMDGIASADGVLVIGASNRVDLL
DDALLRPGRFDDILAVQLPDEGERLQILAIHTKPLSLHSDVDLAQLAHCT
SGYSGADLKAMCTEAGLAALREAHHEQHRFDSTHSLECFSKRSAHLVSMR
HFVIKEVENKC*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:10568..11653+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2418.t1 ID=Gcaud2418.t1|Name=Gcaud2418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:10568..11653+ (Gracilaria caudata M_176_S67 male)
CTGCTTAGCGCTGCTGTCTTCCACAAGCATGTTGAGCTCGAGCCGCCTTC
GCCGCCCGAGCGCTTGCAGTTTCTCTCCGCGCTGCTTCCGGACGCAGACC
CGCTGGTGCTGCGCTACGTTGCCGATCACGCCGCGGGATTCGTGGCTGCT
GACCTCGCTGCACTGTGCACCGCTGCGAGTGAGGCGCCCGGCGATCAGCT
GAACGAAAATATCATCAATGCATTCAAAGGTGCCACCCCGTCCGTGCTGC
GCAGTAATACCTCGGCGCACGTGCCCGAAACGTCATGGCAGGACATAGGC
GGTATGCGGAACGTCAAACGGCGCTTACAGATGGGTGTAGAGTGGCCTCT
GCGGTATGCATCCACTTTCGGCAGGTTGGGCCTCAAAGCGCCTCGCGGAA
TTCTACTGTACGGACCGCCAGGCTGCAGCAAGACGTCGCTGGTGCGCGCA
GCAGCTTCGCAGAGTCGCGCCGTTTTCATTCACCTCAGCGGTGCCGATAT
TTACTCCTGCTACCTGGGTGAGGCAGAGCGTATGCTGCGTGACGCGTTTG
CCACAGCCAGAGCCGCTAAGCCGAGTATTCTATTTCTGGATGAGATCGAT
GCAATCGTTGGGAAGCGCTCTACCGACGGGCAAGTAGATGGAAACGGTGT
GCAGCAACGTGTGTTAAGCACGCTTCTAACCGAAATGGACGGCATTGCAT
CAGCCGATGGCGTATTGGTTATTGGCGCTTCCAACCGCGTTGATTTACTC
GACGATGCATTGTTGAGACCTGGTAGATTTGACGACATATTGGCTGTTCA
ACTGCCAGATGAGGGAGAGAGATTGCAAATACTCGCCATTCATACCAAGC
CACTGTCTCTTCATTCAGATGTGGATTTGGCCCAGCTGGCGCACTGTACC
AGCGGCTACTCCGGCGCGGACCTAAAAGCCATGTGTACCGAAGCAGGTCT
TGCTGCTTTGCGAGAAGCTCACCATGAGCAACACAGATTCGATTCCACAC
ATTCTCTCGAGTGCTTTTCTAAACGCAGTGCACATTTGGTTAGCATGAGA
CATTTTGTTATCAAAGAAGTAGAAAACAAGTGCTAG

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:10568..11653+

>Gcaud2418.t1 ID=Gcaud2418.t1|Name=Gcaud2418.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:10568..11653+ (Gracilaria caudata M_176_S67 male)
CTGCTTAGCGCTGCTGTCTTCCACAAGCATGTTGAGCTCGAGCCGCCTTC
GCCGCCCGAGCGCTTGCAGTTTCTCTCCGCGCTGCTTCCGGACGCAGACC
CGCTGGTGCTGCGCTACGTTGCCGATCACGCCGCGGGATTCGTGGCTGCT
GACCTCGCTGCACTGTGCACCGCTGCGAGTGAGGCGCCCGGCGATCAGCT
GAACGAAAATATCATCAATGCATTCAAAGGTGCCACCCCGTCCGTGCTGC
GCAGTAATACCTCGGCGCACGTGCCCGAAACGTCATGGCAGGACATAGGC
GGTATGCGGAACGTCAAACGGCGCTTACAGATGGGTGTAGAGTGGCCTCT
GCGGTATGCATCCACTTTCGGCAGGTTGGGCCTCAAAGCGCCTCGCGGAA
TTCTACTGTACGGACCGCCAGGCTGCAGCAAGACGTCGCTGGTGCGCGCA
GCAGCTTCGCAGAGTCGCGCCGTTTTCATTCACCTCAGCGGTGCCGATAT
TTACTCCTGCTACCTGGGTGAGGCAGAGCGTATGCTGCGTGACGCGTTTG
CCACAGCCAGAGCCGCTAAGCCGAGTATTCTATTTCTGGATGAGATCGAT
GCAATCGTTGGGAAGCGCTCTACCGACGGGCAAGTAGATGGAAACGGTGT
GCAGCAACGTGTGTTAAGCACGCTTCTAACCGAAATGGACGGCATTGCAT
CAGCCGATGGCGTATTGGTTATTGGCGCTTCCAACCGCGTTGATTTACTC
GACGATGCATTGTTGAGACCTGGTAGATTTGACGACATATTGGCTGTTCA
ACTGCCAGATGAGGGAGAGAGATTGCAAATACTCGCCATTCATACCAAGC
CACTGTCTCTTCATTCAGATGTGGATTTGGCCCAGCTGGCGCACTGTACC
AGCGGCTACTCCGGCGCGGACCTAAAAGCCATGTGTACCGAAGCAGGTCT
TGCTGCTTTGCGAGAAGCTCACCATGAGCAACACAGATTCGATTCCACAC
ATTCTCTCGAGTGCTTTTCTAAACGCAGTGCACATTTGGTTAGCATGAGA
CATTTTGTTATCAAAGAAGTAGAAAACAAGTGCTAG