Gcaud2417.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2417.t1
Unique Name	Gcaud2417.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:7987..9602 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2417	Gcaud2417	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 7987..9602 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2417.t1	Gcaud2417.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 7987..9602 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2417.t1.stop1	Gcaud2417.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 7987..7989 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2417.t1.CDS1	Gcaud2417.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 7987..8091 -
Gcaud2417.t1.CDS2	Gcaud2417.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 8205..9602 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2417.t1.exon1	Gcaud2417.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 7987..8091 -
Gcaud2417.t1.exon2	Gcaud2417.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 8205..9602 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2417.t1.intron1	Gcaud2417.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_295_length_31939_cov_4.445679 8092..8204 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2417.t1.start1	Gcaud2417.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 9600..9602 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:7987..9602-
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:7987..9602-

mRNA sequence

>Gcaud2417.t1 ID=Gcaud2417.t1|Name=Gcaud2417.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MRHPPYRVSQVSPANVTQGVAFCCNFSTPDLWSDMASSFDMGEMFIPDHQ
FRNFMCGSVIAASPFHKHLICALGSAATRHSSIMASYKTHVRRMVVDMRP
TQSINVIEFSWMEDGMLIVTAKVLMPPPPGSRRSTAGCSGAYALFNNVTP
GGTLPAAPMSFVSFVEAPLCPSCFAQGSLGCYCSAALASQNRYSSAAWPQ
VTTDNIYDPASTTLQNVRIRLASIRRFSHVKVTAHVVTPQLQQRHNGLPI
RTYKLGPSRFIIKAVDFRPSTPFESDTLRQVADRWRLLRAGSLRVLSLLA
KEQAEVSPNEDTNLLQSKPNSLLSLPFTDLEQCSSISTNMFDELLQDALN
GCLSATSDENTQSNTCHLCGKSNQDLPDGMDLSICTCMLKTDKQTTSSCE
SYEIHDIMDDKQPAKLKSSKHPTCHLCGKAFSQQGSLNRHLKNIHEEKKI
PCQYCPMSFGQMFDLRRHQKRKHPDRRVASKKCERIETKAYRIPVERLKN
*

spliced messenger RNA

>Gcaud2417.t1 ID=Gcaud2417.t1|Name=Gcaud2417.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:7987..9602- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCACCCCCCCTACCGTGTCTCGCAAGTCAGCCCCGCCAACGTCAC
CCAGGGCGTCGCCTTCTGCTGTAACTTCTCCACCCCAGACCTCTGGTCCG
ACATGGCCTCGTCCTTCGACATGGGCGAGATGTTCATCCCCGACCACCAA
TTCCGCAACTTCATGTGCGGCTCCGTTATCGCCGCCAGCCCCTTCCATAA
GCATCTTATCTGTGCACTCGGCTCCGCCGCCACTCGCCACTCCTCCATAA
TGGCTTCGTACAAGACACATGTGCGCAGAATGGTTGTCGACATGCGCCCC
ACGCAGTCAATTAACGTCATTGAGTTTTCTTGGATGGAGGACGGCATGCT
TATTGTCACCGCCAAGGTGCTTATGCCCCCTCCTCCTGGCTCCCGTCGCT
CCACAGCGGGATGCTCCGGCGCGTATGCACTCTTCAACAACGTTACGCCA
GGCGGCACGCTCCCAGCTGCTCCCATGTCGTTTGTCAGCTTTGTGGAGGC
GCCCCTGTGCCCTTCTTGCTTCGCTCAAGGTTCTCTCGGCTGCTACTGCT
CCGCTGCGCTCGCTTCGCAAAACCGCTACTCCTCTGCTGCGTGGCCCCAG
GTCACCACCGACAATATCTACGACCCGGCAAGCACTACCCTACAGAATGT
CCGCATCCGCTTGGCTTCAATTCGCCGCTTTTCGCACGTCAAAGTCACAG
CACATGTTGTCACGCCTCAACTACAACAGCGTCACAACGGGTTGCCCATT
CGCACGTACAAACTCGGCCCTAGTCGTTTTATCATAAAGGCTGTCGACTT
CCGTCCGAGCACACCGTTTGAGTCCGATACTCTGCGTCAGGTCGCTGACA
GATGGCGCTTGCTTCGAGCCGGATCTCTCCGAGTGCTCTCCTTGTTGGCC
AAAGAGCAAGCCGAAGTTTCGCCTAATGAAGACACCAACCTTTTGCAGTC
AAAACCGAACTCTCTGCTTTCCTTGCCATTCACTGACTTGGAGCAATGCA
GTTCTATCAGTACTAACATGTTTGATGAGTTGTTACAGGACGCCTTGAAT
GGCTGTCTGAGCGCAACATCGGACGAAAACACTCAGAGCAACACCTGTCA
CTTGTGTGGCAAAAGCAACCAAGATCTGCCGGACGGTATGGATCTTTCCA
TTTGCACTTGTATGCTCAAGACGGATAAGCAGACCACGTCTTCGTGCGAG
TCTTACGAGATTCATGACATCATGGACGATAAGCAGCCTGCCAAACTGAA
GTCTTCAAAGCACCCCACATGCCATTTGTGTGGGAAGGCTTTCTCACAAC
AGGGAAGCTTGAACCGTCATTTGAAGAACATTCACGAGGAGAAGAAGATT
CCTTGTCAGTATTGTCCCATGTCTTTCGGACAGATGTTTGATTTGCGGAG
GCACCAGAAGAGAAAACATCCCGATAGACGCGTTGCGAGCAAGAAATGTG
AGCGAATTGAAACAAAAGCCTATCGCATTCCCGTTGAGCGATTGAAAAAC
TGA

protein sequence of Gcaud2417.t1

>Gcaud2417.t1 ID=Gcaud2417.t1|Name=Gcaud2417.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MRHPPYRVSQVSPANVTQGVAFCCNFSTPDLWSDMASSFDMGEMFIPDHQ
FRNFMCGSVIAASPFHKHLICALGSAATRHSSIMASYKTHVRRMVVDMRP
TQSINVIEFSWMEDGMLIVTAKVLMPPPPGSRRSTAGCSGAYALFNNVTP
GGTLPAAPMSFVSFVEAPLCPSCFAQGSLGCYCSAALASQNRYSSAAWPQ
VTTDNIYDPASTTLQNVRIRLASIRRFSHVKVTAHVVTPQLQQRHNGLPI
RTYKLGPSRFIIKAVDFRPSTPFESDTLRQVADRWRLLRAGSLRVLSLLA
KEQAEVSPNEDTNLLQSKPNSLLSLPFTDLEQCSSISTNMFDELLQDALN
GCLSATSDENTQSNTCHLCGKSNQDLPDGMDLSICTCMLKTDKQTTSSCE
SYEIHDIMDDKQPAKLKSSKHPTCHLCGKAFSQQGSLNRHLKNIHEEKKI
PCQYCPMSFGQMFDLRRHQKRKHPDRRVASKKCERIETKAYRIPVERLKN
*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:7987..9602-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2417.t1 ID=Gcaud2417.t1|Name=Gcaud2417.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1616bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:7987..9602- (Gracilaria caudata M_176_S67 male)
ATGCGTCACCCCCCCTACCGTGTCTCGCAAGTCAGCCCCGCCAACGTCAC
CCAGGGCGTCGCCTTCTGCTGTAACTTCTCCACCCCAGACCTCTGGTCCG
ACATGGCCTCGTCCTTCGACATGGGCGAGATGTTCATCCCCGACCACCAA
TTCCGCAACTTCATGTGCGGCTCCGTTATCGCCGCCAGCCCCTTCCATAA
GCATCTTATCTGTGCACTCGGCTCCGCCGCCACTCGCCACTCCTCCATAA
TGGCTTCGTACAAGACACATGTGCGCAGAATGGTTGTCGACATGCGCCCC
ACGCAGTCAATTAACGTCATTGAGTTTTCTTGGATGGAGGACGGCATGCT
TATTGTCACCGCCAAGGTGCTTATGCCCCCTCCTCCTGGCTCCCGTCGCT
CCACAGCGGGATGCTCCGGCGCGTATGCACTCTTCAACAACGTTACGCCA
GGCGGCACGCTCCCAGCTGCTCCCATGTCGTTTGTCAGCTTTGTGGAGGC
GCCCCTGTGCCCTTCTTGCTTCGCTCAAGGTTCTCTCGGCTGCTACTGCT
CCGCTGCGCTCGCTTCGCAAAACCGCTACTCCTCTGCTGCGTGGCCCCAG
GTCACCACCGACAATATCTACGACCCGGCAAGCACTACCCTACAGAATGT
CCGCATCCGCTTGGCTTCAATTCGCCGCTTTTCGCACGTCAAAGTCACAG
CACATGTTGTCACGCCTCAACTACAACAGCGTCACAACGGGTTGCCCATT
CGCACGTACAAACTCGGCCCTAGTCGTTTTATCATAAAGGCTGTCGACTT
CCGTCCGAGCACACCGTTTGAGTCCGATACTCTGCGTCAGGTCGCTGACA
GATGGCGCTTGCTTCGAGCCGGATCTCTCCGAGTGCTCTCCTTGTTGGCC
AAAGAGCAAGCCGAAGTTTCGCCTAATGAAGACACCAACCTTTTGCAGTC
AAAACCGAACTCTCTGCTTTCCTTGCCATTCACTGACTTGGAGCAATGCA
GTTCTATCAGTACTAACATGTTTGATGAGTTGTTACAGGACGCCTTGAAT
GGCTGTCTGAGCGCAACATCGGACGAAAACACTCAGAGCAACACCTGTCA
CTTGTGTGGCAAAAGCAACCAAGATCTGCCGGACGGTATGGATCTTTCCA
TTTGCACTTGTATGCTCAAGACGGATAAGCAGACCACGTCTTCGTGCGAG
TCTTACGAGATTCATGACATCATGGACGATAAGCAGCCTGCCAAACTGAA
GTCTTCAAAGCACCCCACATGCCATTTGTGTGGGAAGGCTTTCTCACAAC
AGGGAAGCTTGAACCGTCATTTGAAGAACATTCACGAGGAGAAGAAGATT
CCTTGTCAGTATTGTCCCATGTCTTTCGGACAGATGTTTGATTTGCGGGT
AAGTTCGTTCACAACAGATGCGCATTTCTTGAGAACGACATGACGTTCGC
AGATAGTGTTCAGGCCTGATACTAACTTTGGATGCGGTAACGGTTTGCAT
TTTGATTGCAGAGGCACCAGAAGAGAAAACATCCCGATAGACGCGTTGCG
AGCAAGAAATGTGAGCGAATTGAAACAAAAGCCTATCGCATTCCCGTTGA
GCGATTGAAAAACTGA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:7987..9602-

>Gcaud2417.t1 ID=Gcaud2417.t1|Name=Gcaud2417.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:7987..9602- (Gracilaria caudata M_176_S67 male)
ATGCGTCACCCCCCCTACCGTGTCTCGCAAGTCAGCCCCGCCAACGTCAC
CCAGGGCGTCGCCTTCTGCTGTAACTTCTCCACCCCAGACCTCTGGTCCG
ACATGGCCTCGTCCTTCGACATGGGCGAGATGTTCATCCCCGACCACCAA
TTCCGCAACTTCATGTGCGGCTCCGTTATCGCCGCCAGCCCCTTCCATAA
GCATCTTATCTGTGCACTCGGCTCCGCCGCCACTCGCCACTCCTCCATAA
TGGCTTCGTACAAGACACATGTGCGCAGAATGGTTGTCGACATGCGCCCC
ACGCAGTCAATTAACGTCATTGAGTTTTCTTGGATGGAGGACGGCATGCT
TATTGTCACCGCCAAGGTGCTTATGCCCCCTCCTCCTGGCTCCCGTCGCT
CCACAGCGGGATGCTCCGGCGCGTATGCACTCTTCAACAACGTTACGCCA
GGCGGCACGCTCCCAGCTGCTCCCATGTCGTTTGTCAGCTTTGTGGAGGC
GCCCCTGTGCCCTTCTTGCTTCGCTCAAGGTTCTCTCGGCTGCTACTGCT
CCGCTGCGCTCGCTTCGCAAAACCGCTACTCCTCTGCTGCGTGGCCCCAG
GTCACCACCGACAATATCTACGACCCGGCAAGCACTACCCTACAGAATGT
CCGCATCCGCTTGGCTTCAATTCGCCGCTTTTCGCACGTCAAAGTCACAG
CACATGTTGTCACGCCTCAACTACAACAGCGTCACAACGGGTTGCCCATT
CGCACGTACAAACTCGGCCCTAGTCGTTTTATCATAAAGGCTGTCGACTT
CCGTCCGAGCACACCGTTTGAGTCCGATACTCTGCGTCAGGTCGCTGACA
GATGGCGCTTGCTTCGAGCCGGATCTCTCCGAGTGCTCTCCTTGTTGGCC
AAAGAGCAAGCCGAAGTTTCGCCTAATGAAGACACCAACCTTTTGCAGTC
AAAACCGAACTCTCTGCTTTCCTTGCCATTCACTGACTTGGAGCAATGCA
GTTCTATCAGTACTAACATGTTTGATGAGTTGTTACAGGACGCCTTGAAT
GGCTGTCTGAGCGCAACATCGGACGAAAACACTCAGAGCAACACCTGTCA
CTTGTGTGGCAAAAGCAACCAAGATCTGCCGGACGGTATGGATCTTTCCA
TTTGCACTTGTATGCTCAAGACGGATAAGCAGACCACGTCTTCGTGCGAG
TCTTACGAGATTCATGACATCATGGACGATAAGCAGCCTGCCAAACTGAA
GTCTTCAAAGCACCCCACATGCCATTTGTGTGGGAAGGCTTTCTCACAAC
AGGGAAGCTTGAACCGTCATTTGAAGAACATTCACGAGGAGAAGAAGATT
CCTTGTCAGTATTGTCCCATGTCTTTCGGACAGATGTTTGATTTGCGGAG
GCACCAGAAGAGAAAACATCCCGATAGACGCGTTGCGAGCAAGAAATGTG
AGCGAATTGAAACAAAAGCCTATCGCATTCCCGTTGAGCGATTGAAAAAC
TGA