Gcaud2416.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2416.t1
Unique NameGcaud2416.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:3950..4924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog202698.XP_007380423.1
PFAMsPA,zf-RING_2
Max annot lvl4751|Fungi
KEGG koko:K15692
Evalue8.59e-10
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,38D33@33154|Opisthokonta,3Q3TW@4751|Fungi
EC2.3.2.27
DescriptionRING-like zinc finger
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2416Gcaud2416Gracilaria caudata M_176_S67 malegeneNODE_295_length_31939_cov_4.445679 3950..4924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2416.t1Gcaud2416.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_295_length_31939_cov_4.445679 3950..4924 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2416.t1.stop1Gcaud2416.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_295_length_31939_cov_4.445679 3950..3952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2416.t1.CDS1Gcaud2416.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 3950..4693 -
Gcaud2416.t1.CDS2Gcaud2416.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 4802..4924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2416.t1.exon1Gcaud2416.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 3950..4693 -
Gcaud2416.t1.exon2Gcaud2416.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 4802..4924 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2416.t1.intron1Gcaud2416.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 4694..4801 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2416.t1.start1Gcaud2416.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_295_length_31939_cov_4.445679 4922..4924 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2416.t1 ID=Gcaud2416.t1|Name=Gcaud2416.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=289bp
MASEAPSSRRWTSRLLHLLPRRRRRAPDSHRPSVAPADTRLAAVRFTRLD
GVDDVHDNNHARERLMYSVLADVDVIEEGDMFAIVDRMSDDDDYQVARPD
FQYFQERVRYGNARNTYYFASRRQTRANRLTDDYMMEFRRNVRMLRNSAA
AAPTDPASTSRYECAASDDQIEALPTIIMEKGETRSVKEIFDSMRDDGAT
NEHTSDECGGLMTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWL
RNHARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT*
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spliced messenger RNA

>Gcaud2416.t1 ID=Gcaud2416.t1|Name=Gcaud2416.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=867bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:3950..4924- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGAGGCGCCATCTTCGCGCCGCTGGACCTCGCGTCTCTTGCA
CCTTCTTCCCCGTCGACGCCGTCGCGCACCTGATTCGCACCGGCCCTCCG
TCGCGCCCGCCGACACTCGATTGGCTGCCGTGCGATTCACGAGGCTGGAT
GGCGTCGACGATGTGCACGATAACAACCATGCCCGCGAGCGTCTCATGTA
TTCCGTGCTGGCGGACGTCGATGTCATCGAGGAGGGCGACATGTTCGCCA
TTGTCGACAGAATGTCCGACGACGACGACTATCAAGTTGCCCGACCCGAC
TTTCAGTACTTTCAAGAGCGTGTGCGCTACGGCAACGCCAGAAATACCTA
CTACTTTGCGAGCAGACGTCAAACACGCGCAAACCGTCTCACAGATGACT
ACATGATGGAGTTCCGCCGCAACGTGCGTATGCTGCGCAACAGTGCCGCC
GCCGCACCCACCGACCCTGCTAGCACCAGCCGCTACGAGTGCGCCGCCAG
CGACGATCAGATCGAGGCGCTACCGACCATTATCATGGAGAAGGGCGAAA
CAAGATCTGTCAAGGAGATCTTCGACAGTATGCGTGACGACGGTGCCACC
AACGAGCATACCTCTGACGAATGTGGCGGGCTTATGACAAGTTATACCGA
GTGCGCCATATGCTTGTGTGAGTTTGAACCAGGCGACGAGATTACTGCTT
TACCATGCGGACACCTGTTTCATCTCACTGGCTGCGTCAGGGAATGGTTG
CGGAATCACGCCAGAACCTGCCCCACATGTCGAGCCGATATATGCGCCCC
TTCTTGTGGCTCGGATGATGTTAACTCACACTCTGCTACTATGGCCACAT
CCGAAGACCTTACATGA
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protein sequence of Gcaud2416.t1

>Gcaud2416.t1 ID=Gcaud2416.t1|Name=Gcaud2416.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=289bp
MASEAPSSRRWTSRLLHLLPRRRRRAPDSHRPSVAPADTRLAAVRFTRLD
GVDDVHDNNHARERLMYSVLADVDVIEEGDMFAIVDRMSDDDDYQVARPD
FQYFQERVRYGNARNTYYFASRRQTRANRLTDDYMMEFRRNVRMLRNSAA
AAPTDPASTSRYECAASDDQIEALPTIIMEKGETRSVKEIFDSMRDDGAT
NEHTSDECGGLMTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWL
RNHARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT*
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mRNA from alignment at NODE_295_length_31939_cov_4.445679:3950..4924-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2416.t1 ID=Gcaud2416.t1|Name=Gcaud2416.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:3950..4924- (Gracilaria caudata M_176_S67 male)
ATGGCTTCCGAGGCGCCATCTTCGCGCCGCTGGACCTCGCGTCTCTTGCA
CCTTCTTCCCCGTCGACGCCGTCGCGCACCTGATTCGCACCGGCCCTCCG
TCGCGCCCGCCGACACTCGATTGGTACGTCGTCCGAGGCGAAACCGTCAT
CGACGCCCCTCCGACGCGCATCCGCGCGCCGCTCCTTTTACTTACTCGCA
GTCTAACTCAGCGCCTACTTTGCCGTCACAGGCTGCCGTGCGATTCACGA
GGCTGGATGGCGTCGACGATGTGCACGATAACAACCATGCCCGCGAGCGT
CTCATGTATTCCGTGCTGGCGGACGTCGATGTCATCGAGGAGGGCGACAT
GTTCGCCATTGTCGACAGAATGTCCGACGACGACGACTATCAAGTTGCCC
GACCCGACTTTCAGTACTTTCAAGAGCGTGTGCGCTACGGCAACGCCAGA
AATACCTACTACTTTGCGAGCAGACGTCAAACACGCGCAAACCGTCTCAC
AGATGACTACATGATGGAGTTCCGCCGCAACGTGCGTATGCTGCGCAACA
GTGCCGCCGCCGCACCCACCGACCCTGCTAGCACCAGCCGCTACGAGTGC
GCCGCCAGCGACGATCAGATCGAGGCGCTACCGACCATTATCATGGAGAA
GGGCGAAACAAGATCTGTCAAGGAGATCTTCGACAGTATGCGTGACGACG
GTGCCACCAACGAGCATACCTCTGACGAATGTGGCGGGCTTATGACAAGT
TATACCGAGTGCGCCATATGCTTGTGTGAGTTTGAACCAGGCGACGAGAT
TACTGCTTTACCATGCGGACACCTGTTTCATCTCACTGGCTGCGTCAGGG
AATGGTTGCGGAATCACGCCAGAACCTGCCCCACATGTCGAGCCGATATA
TGCGCCCCTTCTTGTGGCTCGGATGATGTTAACTCACACTCTGCTACTAT
GGCCACATCCGAAGACCTTACATGA
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Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:3950..4924-

>Gcaud2416.t1 ID=Gcaud2416.t1|Name=Gcaud2416.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=867bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:3950..4924- (Gracilaria caudata M_176_S67 male)
ATGGCTTCCGAGGCGCCATCTTCGCGCCGCTGGACCTCGCGTCTCTTGCA
CCTTCTTCCCCGTCGACGCCGTCGCGCACCTGATTCGCACCGGCCCTCCG
TCGCGCCCGCCGACACTCGATTGGCTGCCGTGCGATTCACGAGGCTGGAT
GGCGTCGACGATGTGCACGATAACAACCATGCCCGCGAGCGTCTCATGTA
TTCCGTGCTGGCGGACGTCGATGTCATCGAGGAGGGCGACATGTTCGCCA
TTGTCGACAGAATGTCCGACGACGACGACTATCAAGTTGCCCGACCCGAC
TTTCAGTACTTTCAAGAGCGTGTGCGCTACGGCAACGCCAGAAATACCTA
CTACTTTGCGAGCAGACGTCAAACACGCGCAAACCGTCTCACAGATGACT
ACATGATGGAGTTCCGCCGCAACGTGCGTATGCTGCGCAACAGTGCCGCC
GCCGCACCCACCGACCCTGCTAGCACCAGCCGCTACGAGTGCGCCGCCAG
CGACGATCAGATCGAGGCGCTACCGACCATTATCATGGAGAAGGGCGAAA
CAAGATCTGTCAAGGAGATCTTCGACAGTATGCGTGACGACGGTGCCACC
AACGAGCATACCTCTGACGAATGTGGCGGGCTTATGACAAGTTATACCGA
GTGCGCCATATGCTTGTGTGAGTTTGAACCAGGCGACGAGATTACTGCTT
TACCATGCGGACACCTGTTTCATCTCACTGGCTGCGTCAGGGAATGGTTG
CGGAATCACGCCAGAACCTGCCCCACATGTCGAGCCGATATATGCGCCCC
TTCTTGTGGCTCGGATGATGTTAACTCACACTCTGCTACTATGGCCACAT
CCGAAGACCTTACATGA
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