Gcaud2415.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2415.t1
Unique Name	Gcaud2415.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:1498..2760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	296587.XP_002506822.1
PFAMs	CTP_transf_like
Max annot lvl	3041\|Chlorophyta
Evalue	1.47e-74
EggNOG OGs	28KTS@1\|root,2QTA1@2759\|Eukaryota,37K08@33090\|Viridiplantae,34K2R@3041\|Chlorophyta
Description	isoform X1
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2415	Gcaud2415	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 1498..2760 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2415.t1.start1	Gcaud2415.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 1498..1500 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2415.t1.CDS1	Gcaud2415.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 1498..2760 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2415.t1.exon1	Gcaud2415.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 1498..2760 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2415.t1.stop1	Gcaud2415.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 2758..2760 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2415.t1	Gcaud2415.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 1498..2760 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:1498..2760+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:1498..2760+

mRNA sequence

>Gcaud2415.t1 ID=Gcaud2415.t1|Name=Gcaud2415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=421bp
MEESLRHAVELIHQSPTRIVLIVSGGASHVSSWLLSVPGASRTVLEARIP
YERAAILDTIGNELRDTIVSFSSPASARALALSAYRRAVALAPAGTRVCG
VAAACALASTTVKKGDHRAFVATHSSERVVEYSLKLDKGRRKRFEEELLS
SRLVLQAILDDCEPGATRSSMGTFQNGGSNDSSGALSISRYSSMSLVRHH
LVSGDQLTGPAVHEQSNCVDAVLQGEIKYAELTKGRWSRQATRAKVILPG
SFNPLHYGHRELLAVAQSMYPNETAAFEISISNVDKLALQASDVRTRLDQ
FRDRDVVLITNAPLFAQKADMLPNSRFVVGTDTALRIVEPKYYGGNTEMI
KALIYLKSKGCSFLVAGRLEQRKDGVTSNTFQTLRDVKIPAGFEDMFEEI
GSTSFRADISSTQLRNRKDR*

spliced messenger RNA

>Gcaud2415.t1 ID=Gcaud2415.t1|Name=Gcaud2415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:1498..2760+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGAGCTTGAGACACGCAGTGGAACTAATTCACCAATCACCCAC
TCGCATAGTTCTCATCGTGTCTGGTGGCGCATCGCATGTGTCTTCGTGGC
TCCTCTCCGTGCCAGGTGCGTCCAGAACTGTTCTCGAAGCTCGAATTCCT
TACGAAAGAGCCGCGATTCTGGATACGATCGGCAACGAGTTGCGAGACAC
AATAGTTTCCTTTTCATCCCCAGCTTCTGCCAGGGCACTTGCACTTTCTG
CGTACCGTCGAGCAGTGGCATTGGCTCCAGCTGGAACACGAGTATGCGGT
GTTGCTGCGGCCTGTGCGTTAGCTTCCACAACCGTAAAGAAAGGTGATCA
TAGGGCGTTCGTGGCTACACATTCTTCAGAACGGGTCGTGGAATACTCTC
TAAAGCTGGACAAGGGGCGCCGAAAGCGTTTCGAAGAAGAGCTTCTGTCC
TCCAGGTTGGTTCTCCAAGCCATTCTTGATGACTGCGAACCTGGTGCAAC
CAGGTCAAGCATGGGAACTTTTCAGAATGGTGGCAGCAACGACAGTAGTG
GCGCGCTGTCGATTTCTCGCTACAGCAGTATGAGTTTAGTGCGACATCAT
CTTGTTTCTGGGGATCAGCTGACCGGTCCGGCGGTGCACGAACAAAGCAA
CTGCGTGGACGCGGTCTTACAAGGCGAAATAAAATACGCAGAGCTGACAA
AAGGCCGATGGAGCAGACAAGCAACGCGCGCGAAAGTGATATTACCGGGT
TCATTCAATCCTCTTCATTACGGACATCGTGAACTTCTTGCAGTAGCCCA
GTCAATGTACCCCAACGAAACGGCAGCTTTTGAAATATCCATATCGAATG
TGGACAAACTCGCATTGCAAGCAAGCGATGTTCGGACCCGCTTGGATCAA
TTTCGCGACAGGGACGTGGTTCTTATTACAAACGCCCCGTTATTTGCACA
AAAAGCAGACATGTTACCTAACAGCCGTTTTGTGGTTGGAACAGATACTG
CATTACGCATTGTTGAGCCAAAGTATTACGGGGGAAATACGGAAATGATC
AAAGCATTGATATACCTGAAGTCGAAGGGGTGCAGCTTTCTAGTGGCCGG
AAGGCTAGAGCAAAGGAAAGACGGTGTAACTAGTAACACCTTTCAAACTC
TCAGAGACGTGAAGATACCGGCCGGCTTCGAGGACATGTTTGAGGAAATT
GGTAGCACTTCATTTCGAGCAGATATTTCGAGCACACAGCTTAGGAATCG
AAAAGATAGATGA

protein sequence of Gcaud2415.t1

>Gcaud2415.t1 ID=Gcaud2415.t1|Name=Gcaud2415.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=421bp
MEESLRHAVELIHQSPTRIVLIVSGGASHVSSWLLSVPGASRTVLEARIP
YERAAILDTIGNELRDTIVSFSSPASARALALSAYRRAVALAPAGTRVCG
VAAACALASTTVKKGDHRAFVATHSSERVVEYSLKLDKGRRKRFEEELLS
SRLVLQAILDDCEPGATRSSMGTFQNGGSNDSSGALSISRYSSMSLVRHH
LVSGDQLTGPAVHEQSNCVDAVLQGEIKYAELTKGRWSRQATRAKVILPG
SFNPLHYGHRELLAVAQSMYPNETAAFEISISNVDKLALQASDVRTRLDQ
FRDRDVVLITNAPLFAQKADMLPNSRFVVGTDTALRIVEPKYYGGNTEMI
KALIYLKSKGCSFLVAGRLEQRKDGVTSNTFQTLRDVKIPAGFEDMFEEI
GSTSFRADISSTQLRNRKDR*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:1498..2760+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2415.t1 ID=Gcaud2415.t1|Name=Gcaud2415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:1498..2760+ (Gracilaria caudata M_176_S67 male)
ATGGAAGAGAGCTTGAGACACGCAGTGGAACTAATTCACCAATCACCCAC
TCGCATAGTTCTCATCGTGTCTGGTGGCGCATCGCATGTGTCTTCGTGGC
TCCTCTCCGTGCCAGGTGCGTCCAGAACTGTTCTCGAAGCTCGAATTCCT
TACGAAAGAGCCGCGATTCTGGATACGATCGGCAACGAGTTGCGAGACAC
AATAGTTTCCTTTTCATCCCCAGCTTCTGCCAGGGCACTTGCACTTTCTG
CGTACCGTCGAGCAGTGGCATTGGCTCCAGCTGGAACACGAGTATGCGGT
GTTGCTGCGGCCTGTGCGTTAGCTTCCACAACCGTAAAGAAAGGTGATCA
TAGGGCGTTCGTGGCTACACATTCTTCAGAACGGGTCGTGGAATACTCTC
TAAAGCTGGACAAGGGGCGCCGAAAGCGTTTCGAAGAAGAGCTTCTGTCC
TCCAGGTTGGTTCTCCAAGCCATTCTTGATGACTGCGAACCTGGTGCAAC
CAGGTCAAGCATGGGAACTTTTCAGAATGGTGGCAGCAACGACAGTAGTG
GCGCGCTGTCGATTTCTCGCTACAGCAGTATGAGTTTAGTGCGACATCAT
CTTGTTTCTGGGGATCAGCTGACCGGTCCGGCGGTGCACGAACAAAGCAA
CTGCGTGGACGCGGTCTTACAAGGCGAAATAAAATACGCAGAGCTGACAA
AAGGCCGATGGAGCAGACAAGCAACGCGCGCGAAAGTGATATTACCGGGT
TCATTCAATCCTCTTCATTACGGACATCGTGAACTTCTTGCAGTAGCCCA
GTCAATGTACCCCAACGAAACGGCAGCTTTTGAAATATCCATATCGAATG
TGGACAAACTCGCATTGCAAGCAAGCGATGTTCGGACCCGCTTGGATCAA
TTTCGCGACAGGGACGTGGTTCTTATTACAAACGCCCCGTTATTTGCACA
AAAAGCAGACATGTTACCTAACAGCCGTTTTGTGGTTGGAACAGATACTG
CATTACGCATTGTTGAGCCAAAGTATTACGGGGGAAATACGGAAATGATC
AAAGCATTGATATACCTGAAGTCGAAGGGGTGCAGCTTTCTAGTGGCCGG
AAGGCTAGAGCAAAGGAAAGACGGTGTAACTAGTAACACCTTTCAAACTC
TCAGAGACGTGAAGATACCGGCCGGCTTCGAGGACATGTTTGAGGAAATT
GGTAGCACTTCATTTCGAGCAGATATTTCGAGCACACAGCTTAGGAATCG
AAAAGATAGATGA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:1498..2760+

>Gcaud2415.t1 ID=Gcaud2415.t1|Name=Gcaud2415.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1263bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:1498..2760+ (Gracilaria caudata M_176_S67 male)
ATGGAAGAGAGCTTGAGACACGCAGTGGAACTAATTCACCAATCACCCAC
TCGCATAGTTCTCATCGTGTCTGGTGGCGCATCGCATGTGTCTTCGTGGC
TCCTCTCCGTGCCAGGTGCGTCCAGAACTGTTCTCGAAGCTCGAATTCCT
TACGAAAGAGCCGCGATTCTGGATACGATCGGCAACGAGTTGCGAGACAC
AATAGTTTCCTTTTCATCCCCAGCTTCTGCCAGGGCACTTGCACTTTCTG
CGTACCGTCGAGCAGTGGCATTGGCTCCAGCTGGAACACGAGTATGCGGT
GTTGCTGCGGCCTGTGCGTTAGCTTCCACAACCGTAAAGAAAGGTGATCA
TAGGGCGTTCGTGGCTACACATTCTTCAGAACGGGTCGTGGAATACTCTC
TAAAGCTGGACAAGGGGCGCCGAAAGCGTTTCGAAGAAGAGCTTCTGTCC
TCCAGGTTGGTTCTCCAAGCCATTCTTGATGACTGCGAACCTGGTGCAAC
CAGGTCAAGCATGGGAACTTTTCAGAATGGTGGCAGCAACGACAGTAGTG
GCGCGCTGTCGATTTCTCGCTACAGCAGTATGAGTTTAGTGCGACATCAT
CTTGTTTCTGGGGATCAGCTGACCGGTCCGGCGGTGCACGAACAAAGCAA
CTGCGTGGACGCGGTCTTACAAGGCGAAATAAAATACGCAGAGCTGACAA
AAGGCCGATGGAGCAGACAAGCAACGCGCGCGAAAGTGATATTACCGGGT
TCATTCAATCCTCTTCATTACGGACATCGTGAACTTCTTGCAGTAGCCCA
GTCAATGTACCCCAACGAAACGGCAGCTTTTGAAATATCCATATCGAATG
TGGACAAACTCGCATTGCAAGCAAGCGATGTTCGGACCCGCTTGGATCAA
TTTCGCGACAGGGACGTGGTTCTTATTACAAACGCCCCGTTATTTGCACA
AAAAGCAGACATGTTACCTAACAGCCGTTTTGTGGTTGGAACAGATACTG
CATTACGCATTGTTGAGCCAAAGTATTACGGGGGAAATACGGAAATGATC
AAAGCATTGATATACCTGAAGTCGAAGGGGTGCAGCTTTCTAGTGGCCGG
AAGGCTAGAGCAAAGGAAAGACGGTGTAACTAGTAACACCTTTCAAACTC
TCAGAGACGTGAAGATACCGGCCGGCTTCGAGGACATGTTTGAGGAAATT
GGTAGCACTTCATTTCGAGCAGATATTTCGAGCACACAGCTTAGGAATCG
AAAAGATAGATGA