Gcaud2414.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2414.t1
Unique NameGcaud2414.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:418..3476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S249_38V6.1
PFAMsY_phosphatase2
Max annot lvl35493|Streptophyta
KEGG koko:K18045
GOsGO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0031347,GO:0032101,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048583,GO:0050789,GO:0065007,GO:0071704,GO:0080134,GO:0140096,GO:1900150,GO:1901564
Evalue1.36e-38
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota,37I34@33090|Viridiplantae,3GB3Z@35493|Streptophyta
EC3.1.3.48
DescriptionTyrosine-protein phosphatase
COG categoryV
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2414Gcaud2414Gracilaria caudata M_176_S67 malegeneNODE_295_length_31939_cov_4.445679 418..3476 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2414.t1.stop1Gcaud2414.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_295_length_31939_cov_4.445679 418..420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2414.t1.CDS1Gcaud2414.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 418..648 -
Gcaud2414.t1.CDS2Gcaud2414.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 730..820 -
Gcaud2414.t1.CDS3Gcaud2414.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 2733..2736 -
Gcaud2414.t1.CDS4Gcaud2414.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 2856..2927 -
Gcaud2414.t1.CDS5Gcaud2414.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 3005..3074 -
Gcaud2414.t1.CDS6Gcaud2414.t1.CDS6Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 3210..3476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2414.t1.exon1Gcaud2414.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 418..648 -
Gcaud2414.t1.exon2Gcaud2414.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 730..820 -
Gcaud2414.t1.exon3Gcaud2414.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 2733..2736 -
Gcaud2414.t1.exon4Gcaud2414.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 2856..2927 -
Gcaud2414.t1.exon5Gcaud2414.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 3005..3074 -
Gcaud2414.t1.exon6Gcaud2414.t1.exon6Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 3210..3476 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2414.t1.intron1Gcaud2414.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 649..729 -
Gcaud2414.t1.intron2Gcaud2414.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 821..2732 -
Gcaud2414.t1.intron3Gcaud2414.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 2737..2855 -
Gcaud2414.t1.intron4Gcaud2414.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 2928..3004 -
Gcaud2414.t1.intron5Gcaud2414.t1.intron5Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 3075..3209 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2414.t1.start1Gcaud2414.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_295_length_31939_cov_4.445679 3474..3476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2414.t1Gcaud2414.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_295_length_31939_cov_4.445679 418..3476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2414.t1 ID=Gcaud2414.t1|Name=Gcaud2414.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=245bp
MPPEEMRSELEPVIPPLNFAMVTPGIYRSGYPKTFNHSFLKSLRLKTLIY
LCPENCNEQNLAFYRENGINVMQFGIPGNKEPFTDIPEPVIRDALEVLLD
VRRHPLLIHCNKVSSLRWQQDSNTRSTIHRTFSNFFAVYSEVDVLVQRSD
PAGQNSFWQKRKSDEMLLIVIPSFLIIWSRAYMSREGRVHSAALKGREID
IPAENDISDTTDKKFLRVLAPCVGDRQMRPAIQPFTDGSFPTSS*
back to top

spliced messenger RNA

>Gcaud2414.t1 ID=Gcaud2414.t1|Name=Gcaud2414.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=735bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:418..3476- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGAGGAGATGCGCAGTGAGCTGGAGCCGGTTATACCCCCGCT
GAACTTTGCAATGGTCACCCCCGGAATATATCGCTCTGGCTATCCGAAGA
CGTTCAACCACTCATTCCTCAAATCTCTTCGGCTGAAAACGCTCATCTAC
TTGTGTCCGGAGAACTGCAATGAGCAGAACCTTGCATTCTATCGCGAAAA
CGGCATAAACGTCATGCAGTTCGGAATTCCCGGCAACAAGGAGCCCTTCA
CAGATATTCCTGAGCCGGTCATTCGTGATGCTTTGGAAGTTTTGCTTGAT
GTCAGACGTCACCCTCTTTTGATTCATTGTAACAAAGTATCGTCGCTTCG
CTGGCAACAAGACTCGAATACTAGATCAACAATTCATCGAACTTTTTCAA
ACTTCTTTGCTGTCTACTCGGAGGTCGACGTACTGGTTCAGCGCTCAGAT
CCAGCAGGGCAGAACAGCTTCTGGCAGAAGAGGAAGAGTGACGAAATGCT
TTTAATCGTGATTCCGTCGTTTTTGATCATATGGAGCCGTGCATATATGT
CTCGTGAAGGCCGAGTGCACTCTGCTGCTTTGAAAGGCAGAGAGATAGAC
ATACCAGCAGAAAACGATATCTCAGATACCACAGACAAGAAGTTTTTACG
GGTTTTGGCACCATGCGTCGGAGACCGTCAAATGAGACCAGCGATACAGC
CTTTCACGGACGGTAGCTTTCCTACCTCCAGCTAG
back to top

protein sequence of Gcaud2414.t1

>Gcaud2414.t1 ID=Gcaud2414.t1|Name=Gcaud2414.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=245bp
MPPEEMRSELEPVIPPLNFAMVTPGIYRSGYPKTFNHSFLKSLRLKTLIY
LCPENCNEQNLAFYRENGINVMQFGIPGNKEPFTDIPEPVIRDALEVLLD
VRRHPLLIHCNKVSSLRWQQDSNTRSTIHRTFSNFFAVYSEVDVLVQRSD
PAGQNSFWQKRKSDEMLLIVIPSFLIIWSRAYMSREGRVHSAALKGREID
IPAENDISDTTDKKFLRVLAPCVGDRQMRPAIQPFTDGSFPTSS*
back to top

mRNA from alignment at NODE_295_length_31939_cov_4.445679:418..3476-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2414.t1 ID=Gcaud2414.t1|Name=Gcaud2414.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3059bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:418..3476- (Gracilaria caudata M_176_S67 male)
ATGCCGCCCGAGGAGATGCGCAGTGAGCTGGAGCCGGTTATACCCCCGCT
GAACTTTGCAATGGTCACCCCCGGAATATATCGCTCTGGCTATCCGAAGA
CGTTCAACCACTCATTCCTCAAATCTCTTCGGCTGAAAACGCTCATCTAC
TTGTGTCCGGAGAACTGCAATGAGCAGAACCTTGCATTCTATCGCGAAAA
CGGCATAAACGTCATGCAGTTCGGAATTCCCGGCAACAAGGAGCCCTTCA
CAGATATTCCTGAGCCGGTACGTCGGTCAACAATGATGCATTCTCGCTCC
GTAATATCATCTTATGGCTAACGAAAGCGTGCGTTTTGTTTCGTGGCTTC
CGTACATACCTGGCTATTTCCTGCGACATTTGCGGGTTCGAAAATCGCCT
AGGTCATTCGTGATGCTTTGGAAGTTTTGCTTGATGTCAGACGTCACCCT
CTTTTGATTCATTGTAACAAAGGTAAGCATCGAACGGGCTGCCTTGTGGG
TTGCCTTCGCAAGGTGCAGCGATGGTCGCTCACTTCAATTTTTGATGAGT
ATCGTCGCTTCGCTGGCAACAAGACTCGAATACTAGATCAACAATTCATC
GAACTTTTTCAAACTTCTTTGGTACGATACAACGTCACATACAAACCTGC
ATGGCTTTGACGGTCTTGTTAATCTTGAATATGCCTTTATCGTGTTGCTG
CGTGGCGCTCGTTTGTTCATCTATCTTTTCGATTCCTAAGCTGTGTGCTC
GAAATATCTGCTCGAAATGAAGTGCTACCAATTTCCTCAAACATGTCCTC
GAAGCCGGCCGGTATCTTCACGTCTCTGAGAGTTTGAAAGGTGTTACTAG
TTACACCGTCTTTCCTTTGCTCTAGCCTTCCGGCCACTAGAAAGCTGCAC
CCCTTCGACTTCAGGTATATCAATGCTTTGATCATTTCCGTATTTCCCCC
GTAATACTTTGGCTCAACAATGCGTAATGCAGTATCTGTTCCAACCACAA
AACGGCTGTTAGGTAACATGTCTGCTTTTTGTGCAAATAACGGGGCGTTT
GTAATAAGAACCACGTCCCTGTCGCGAAATTGATCCAAGCGGGTCCGAAC
ATCGCTTGCTTGCAATGCGAGTTTGTCCACATTCGATATGGATATTTCAA
AAGCTGCCGTTTCGTTGGGGTACATTGACTGGGCTACTGCAAGAAGTTCA
CGATGTCCGTAATGAAGAGGATTGAATGAACCCGGTAATATCACTTTCGC
GCGCGTTGCTTGTCTGCTCCATCGGCCTTTTGTCAGCTCTGCGTATTTTA
TTTCGCCTTGTAAGACCGCGTCCACGCAGTTGCTTTGTTCGTGCACCGCC
GGACCGGTCAGCTGATCCCCAGAAACAAGATGATGTCGCACTAAACTCAT
ACTGCTGTAGCGAGAAATCGACAGCGCGCCACTACTGTCGTTGCTGCCAC
CATTCTGAAAAGTTCCCATGCTTGACCTGGTTGCACCAGGTTCGCAGTCA
TCAAGAATGGCTTGGAGAACCAACCTGGAGGACAGAAGCTCTTCTTCGAA
ACGCTTTCGGCGCCCCTTGTCCAGCTTTAGAGAGTATTCCACGACCCGTT
CTGAAGAATGTGTAGCCACGAACGCCCTATGATCACCTTTCTTTACGGTT
GTGGAAGCTAACGCACAGGCCGCAGCAACACCGCATACTCGTGTTCCAGC
TGGAGCCAATGCCACTGCTCGACGGTACGCAGAAAGTGCAAGTGCCCTGG
CAGAAGCTGGGGATGAAAAGGAAACTATTGTGTCTCGCAACTCGTTGCCG
ATCGTATCCAGAATCGCGGCTCTTTCGTAAGGAATTCGAGCTTCGAGAAC
AGTTCTGGACGCACCTGGCACGGAGAGGAGCCACGAAGACACATGCGATG
CGCCACCAGACACGATGAGAACTATGCGAGTGGGTGATTGGTGAATTAGT
TCCACTGCGTGTCTCAAGCTCTCTTCCATTTGCACGAATCTGAATTCTTC
TGTTTAAACGACGTCTCTACGCCAGCAAGCATTGAACTGTTCGGATATTC
AAGACGTACAAGGCTCACTGAAGTTGTGGAGCTCAGCTGACTCGCTTCCT
CCAAGAAAGGGAGGAATCGAGGGATAATCTGGGACACGACCGCACCAACA
ATGTCCATGGCACCTGTGCATTTCGCGCTTTTTTTTGCCTGCCTCTACCC
AGGCAACGAATGGTGCATCTACGAAGGTAGCGTTCTACCGTCGTATCTAT
TCAGCAGTGCAAGAAATCTAATGTTACAGAGGGCTACTGTTACCTTCATA
CGCAGCGGGCGCTGTGCACCCGGTAGCCTTCGTGTTGCAAGCCGAGAGTT
CAGGACCTGAGCGAACGCGTATTGAATGCGGGTCGAAGACGAGTCATTCT
TACCTTCTCACCTGAGGATCTCTGCCAACACACACTGTCCTTGCGGTTTA
TACCTCGGTACAAGAGCAACCTGTGGGACGTATTGGCTTGTGTTCATCAT
GTGCGGTCTGGTAAGATAACAATCGTGAGAAGGGTGGCATCCAGACAAGA
AGAAACTCAATGCGTGAAACGCCATGTACTAGCATCTCAATGTCTTCTTT
GAATGCGACCGAGGGAAGGGGGACCCAAGGTACCCTTGTAGGTACTCAAC
GCAAAGCTACTCGGAGGTCGACGTACTGGTTCAGCGCTCAGATCCAGCAG
GGCAGAACAGCTTCTGGCAGAAGAGGAAGAGTGACGAAATGCTTTTAGTA
TGTTACCACGGAATGGTAAGAATTCGAGACACGATTGCATACTAATAATA
TTTTGTGATTGACTAATTGGCCCAGAAGATCGTGATTCCGTCGTTTTTGA
TCATATGGAGCCGTGCATATATGTCTCGTGAAGGCCGAGTGCACTCTGCT
GCTTTGAAAGGCAGAGAGATAGACATACCAGCAGAAAACGATATCTCAGA
TACCACAGACAAGAAGTTTTTACGGGTTTTGGCACCATGCGTCGGAGACC
GTCAAATGAGACCAGCGATACAGCCTTTCACGGACGGTAGCTTTCCTACC
TCCAGCTAG
back to top

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:418..3476-

>Gcaud2414.t1 ID=Gcaud2414.t1|Name=Gcaud2414.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=735bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:418..3476- (Gracilaria caudata M_176_S67 male)
ATGCCGCCCGAGGAGATGCGCAGTGAGCTGGAGCCGGTTATACCCCCGCT
GAACTTTGCAATGGTCACCCCCGGAATATATCGCTCTGGCTATCCGAAGA
CGTTCAACCACTCATTCCTCAAATCTCTTCGGCTGAAAACGCTCATCTAC
TTGTGTCCGGAGAACTGCAATGAGCAGAACCTTGCATTCTATCGCGAAAA
CGGCATAAACGTCATGCAGTTCGGAATTCCCGGCAACAAGGAGCCCTTCA
CAGATATTCCTGAGCCGGTCATTCGTGATGCTTTGGAAGTTTTGCTTGAT
GTCAGACGTCACCCTCTTTTGATTCATTGTAACAAAGTATCGTCGCTTCG
CTGGCAACAAGACTCGAATACTAGATCAACAATTCATCGAACTTTTTCAA
ACTTCTTTGCTGTCTACTCGGAGGTCGACGTACTGGTTCAGCGCTCAGAT
CCAGCAGGGCAGAACAGCTTCTGGCAGAAGAGGAAGAGTGACGAAATGCT
TTTAATCGTGATTCCGTCGTTTTTGATCATATGGAGCCGTGCATATATGT
CTCGTGAAGGCCGAGTGCACTCTGCTGCTTTGAAAGGCAGAGAGATAGAC
ATACCAGCAGAAAACGATATCTCAGATACCACAGACAAGAAGTTTTTACG
GGTTTTGGCACCATGCGTCGGAGACCGTCAAATGAGACCAGCGATACAGC
CTTTCACGGACGGTAGCTTTCCTACCTCCAGCTAG
back to top