Gcaud2413.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2413.t1
Unique NameGcaud2413.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2515_length_5432_cov_7.848530contigNODE_2515_length_5432_cov_7.848530:4382..4795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008614769.1
PFAMsDnaJ
Max annot lvl2759|Eukaryota
KEGG koko:K09512
Evalue3.44e-08
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota
Descriptionprotein folding
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2413Gcaud2413Gracilaria caudata M_176_S67 malegeneNODE_2515_length_5432_cov_7.848530 4382..4795 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2413.t1.start1Gcaud2413.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2515_length_5432_cov_7.848530 4382..4384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2413.t1.CDS1Gcaud2413.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2515_length_5432_cov_7.848530 4382..4795 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2413.t1.exon1Gcaud2413.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2515_length_5432_cov_7.848530 4382..4795 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2413.t1.stop1Gcaud2413.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2515_length_5432_cov_7.848530 4793..4795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2413.t1Gcaud2413.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2515_length_5432_cov_7.848530 4382..4795 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2413.t1 ID=Gcaud2413.t1|Name=Gcaud2413.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=138bp
MPSPSAWAYQALDLPPSATPTDIRLAYKRLSLVTHPDKTRDPDSRPRFDL
IMEAYNFLSDLSVRDENQHQTVSPVITDEIEVSEMEENDDGLLYSCRCGG
SFVVEKERVKTVLESGRDGVVVSCDGCSLAIKVSPEG*
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spliced messenger RNA

>Gcaud2413.t1 ID=Gcaud2413.t1|Name=Gcaud2413.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp|location=Sequence derived from alignment at NODE_2515_length_5432_cov_7.848530:4382..4795+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCGCCTTCTGCATGGGCGTACCAGGCGCTAGATCTCCCACCATC
TGCGACGCCCACCGACATCCGTCTGGCGTATAAGAGACTTTCACTTGTCA
CTCATCCCGACAAGACTCGCGACCCCGACAGTCGGCCGCGCTTCGATCTC
ATTATGGAGGCGTATAACTTTCTCTCTGATTTATCTGTAAGGGACGAGAA
TCAACACCAGACCGTCTCGCCGGTTATCACCGACGAGATCGAAGTGTCGG
AGATGGAGGAGAACGATGATGGACTTCTGTATTCTTGTCGATGCGGAGGA
TCGTTTGTTGTTGAAAAAGAGCGAGTGAAAACGGTTCTAGAATCTGGTAG
GGATGGCGTTGTTGTTTCCTGTGATGGGTGTTCTCTCGCCATCAAAGTGT
CCCCCGAAGGTTGA
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protein sequence of Gcaud2413.t1

>Gcaud2413.t1 ID=Gcaud2413.t1|Name=Gcaud2413.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=138bp
MPSPSAWAYQALDLPPSATPTDIRLAYKRLSLVTHPDKTRDPDSRPRFDL
IMEAYNFLSDLSVRDENQHQTVSPVITDEIEVSEMEENDDGLLYSCRCGG
SFVVEKERVKTVLESGRDGVVVSCDGCSLAIKVSPEG*
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mRNA from alignment at NODE_2515_length_5432_cov_7.848530:4382..4795+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2413.t1 ID=Gcaud2413.t1|Name=Gcaud2413.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp|location=Sequence derived from alignment at NODE_2515_length_5432_cov_7.848530:4382..4795+ (Gracilaria caudata M_176_S67 male)
ATGCCATCGCCTTCTGCATGGGCGTACCAGGCGCTAGATCTCCCACCATC
TGCGACGCCCACCGACATCCGTCTGGCGTATAAGAGACTTTCACTTGTCA
CTCATCCCGACAAGACTCGCGACCCCGACAGTCGGCCGCGCTTCGATCTC
ATTATGGAGGCGTATAACTTTCTCTCTGATTTATCTGTAAGGGACGAGAA
TCAACACCAGACCGTCTCGCCGGTTATCACCGACGAGATCGAAGTGTCGG
AGATGGAGGAGAACGATGATGGACTTCTGTATTCTTGTCGATGCGGAGGA
TCGTTTGTTGTTGAAAAAGAGCGAGTGAAAACGGTTCTAGAATCTGGTAG
GGATGGCGTTGTTGTTTCCTGTGATGGGTGTTCTCTCGCCATCAAAGTGT
CCCCCGAAGGTTGA
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Coding sequence (CDS) from alignment at NODE_2515_length_5432_cov_7.848530:4382..4795+

>Gcaud2413.t1 ID=Gcaud2413.t1|Name=Gcaud2413.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=414bp|location=Sequence derived from alignment at NODE_2515_length_5432_cov_7.848530:4382..4795+ (Gracilaria caudata M_176_S67 male)
ATGCCATCGCCTTCTGCATGGGCGTACCAGGCGCTAGATCTCCCACCATC
TGCGACGCCCACCGACATCCGTCTGGCGTATAAGAGACTTTCACTTGTCA
CTCATCCCGACAAGACTCGCGACCCCGACAGTCGGCCGCGCTTCGATCTC
ATTATGGAGGCGTATAACTTTCTCTCTGATTTATCTGTAAGGGACGAGAA
TCAACACCAGACCGTCTCGCCGGTTATCACCGACGAGATCGAAGTGTCGG
AGATGGAGGAGAACGATGATGGACTTCTGTATTCTTGTCGATGCGGAGGA
TCGTTTGTTGTTGAAAAAGAGCGAGTGAAAACGGTTCTAGAATCTGGTAG
GGATGGCGTTGTTGTTTCCTGTGATGGGTGTTCTCTCGCCATCAAAGTGT
CCCCCGAAGGTTGA
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