Gcaud2407.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2407.t1
Unique NameGcaud2407.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_808_length_17683_cov_4.001592contigNODE_808_length_17683_cov_4.001592:244..1620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708953.1
Preferred nameASL
PFAMsASL_C2,Lyase_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00445,RC00447
KEGG koko:K01755
KEGG ReactionR01086
KEGG Pathwayko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230
KEGG ModuleM00029,M00844,M00845
GOsGO:0000050,GO:0000053,GO:0001655,GO:0001666,GO:0001822,GO:0001889,GO:0002237,GO:0002376,GO:0003674,GO:0003824,GO:0004056,GO:0005198,GO:0005212,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006536,GO:0006541,GO:0006575,GO:0006591,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0007494,GO:0007517,GO:0007568,GO:0007584,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009410,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009791,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010243,GO:0012505,GO:0014070,GO:0014074,GO:0014075,GO:0016020,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019627,GO:0019676,GO:0019740,GO:0019752,GO:0019867,GO:0031090,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032496,GO:0032501,GO:0032502,GO:0032870,GO:0033554,GO:0033762,GO:0033993,GO:0034097,GO:0034341,GO:0034612,GO:0034641,GO:0035295,GO:0035690,GO:0036293,GO:0036294,GO:0036477,GO:0042221,GO:0042450,GO:0042493,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043204,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046683,GO:0048471,GO:0048513,GO:0048545,GO:0048565,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051384,GO:0051591,GO:0051704,GO:0051707,GO:0051716,GO:0055123,GO:0060359,GO:0060416,GO:0060538,GO:0060539,GO:0060541,GO:0061008,GO:0061061,GO:0070482,GO:0070852,GO:0070887,GO:0071242,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071356,GO:0071375,GO:0071377,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071453,GO:0071456,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071941,GO:0072001,GO:0072350,GO:0097327,GO:0097458,GO:0098588,GO:0098805,GO:0120025,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701
Evalue2.22e-197
EggNOG OGsCOG0165@1|root,KOG1316@2759|Eukaryota
EC4.3.2.1
Descriptionargininosuccinate lyase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2407Gcaud2407Gracilaria caudata M_176_S67 malegeneNODE_808_length_17683_cov_4.001592 244..1620 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2407.t1.stop1Gcaud2407.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_808_length_17683_cov_4.001592 244..246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2407.t1.CDS1Gcaud2407.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_808_length_17683_cov_4.001592 244..1620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2407.t1.exon1Gcaud2407.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_808_length_17683_cov_4.001592 244..1620 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2407.t1.start1Gcaud2407.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_808_length_17683_cov_4.001592 1618..1620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2407.t1Gcaud2407.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_808_length_17683_cov_4.001592 244..1620 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2407.t1 ID=Gcaud2407.t1|Name=Gcaud2407.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp
MSMWGGRFDDRPKEIVAKMGESISYDRRLYRHDIQGSKAHAQMLARQNII
PESDALKITEGLAQIAAEIEQGNFKWSEALEDVHMNIEKRLTDRIGESGA
RLHAGRSRNDQVATDIRLYLRDEVEVIRTCVVNVQRALVELANQHTDTVM
PGFTHLQHAQPIVLAHYLLAYTEMFQRDVLRLDDWRKRMNYLPLGSSALA
GSTLPLDRKWVAQELGFDGLCDNSLDAVSDRDFVIELVSVCSMIMMHLSR
MSEDIIFWMSQEAGWVDLGDGFCTGSSLMPQKKNPDMCELTRGKTARVYG
NLTTLLTIMKGIPLAYNRDMQEDKEPVFDTVDTVKLVLSVYAPMIKSMKV
NKERMYEAACDPALMATDLAEWLVKQGMPFRDSHERVGELVGYSIKIGVP
LDQLTLEQMKSKIPEANEECLQLWKPEKSVAQRDIAGGTAPNQARHQLET
KWAHLLKQ*
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spliced messenger RNA

>Gcaud2407.t1 ID=Gcaud2407.t1|Name=Gcaud2407.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at NODE_808_length_17683_cov_4.001592:244..1620- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATGTGGGGCGGTCGTTTTGATGACAGGCCAAAAGAGATCGTCGC
CAAGATGGGCGAATCCATCTCCTACGATCGTCGTCTATACCGGCATGACA
TTCAAGGCTCCAAAGCGCACGCCCAGATGCTCGCAAGACAAAACATCATC
CCCGAATCGGACGCCCTCAAAATCACAGAAGGTCTTGCACAAATCGCAGC
CGAGATTGAACAAGGCAACTTCAAATGGTCAGAAGCACTGGAAGACGTGC
ACATGAACATTGAAAAACGTCTCACCGACCGTATAGGCGAATCTGGAGCT
CGATTACATGCCGGTCGCTCTCGTAACGATCAGGTTGCAACTGATATTCG
CTTGTATTTACGCGATGAAGTCGAAGTGATTCGTACGTGTGTCGTCAATG
TTCAGCGCGCTTTGGTTGAGTTGGCGAATCAACATACGGATACAGTTATG
CCTGGTTTCACTCATCTGCAGCATGCGCAACCTATTGTGTTGGCACACTA
TCTTTTGGCATACACGGAAATGTTTCAGCGCGATGTTCTCAGACTTGATG
ATTGGCGGAAACGAATGAATTATCTTCCGTTGGGGTCTAGTGCGTTAGCT
GGTTCTACCTTGCCGTTGGATAGGAAGTGGGTGGCTCAAGAACTGGGCTT
TGATGGTTTGTGTGACAACTCACTTGACGCTGTCAGCGATCGCGATTTTG
TCATTGAGCTTGTCTCGGTGTGCAGCATGATCATGATGCACTTGTCCCGA
ATGAGTGAGGATATCATATTCTGGATGAGTCAGGAGGCGGGTTGGGTCGA
TTTGGGCGATGGATTTTGCACCGGAAGTTCCCTCATGCCGCAGAAGAAGA
ACCCGGACATGTGCGAACTCACGAGAGGAAAGACCGCTCGCGTGTACGGC
AATCTCACCACGTTGTTGACTATCATGAAAGGCATTCCACTAGCGTACAA
CCGAGACATGCAGGAAGACAAGGAGCCTGTGTTCGACACGGTCGATACGG
TCAAGCTTGTGCTCTCCGTCTACGCGCCCATGATCAAGTCAATGAAGGTC
AACAAGGAACGCATGTACGAAGCCGCATGCGACCCGGCGCTTATGGCAAC
CGATTTGGCGGAGTGGCTCGTCAAGCAAGGCATGCCGTTCCGGGACTCCC
ATGAACGAGTTGGCGAGTTAGTCGGATACAGCATAAAGATTGGCGTGCCA
CTTGACCAACTGACTCTTGAGCAGATGAAAAGCAAAATTCCAGAGGCCAA
CGAGGAGTGCTTGCAACTTTGGAAACCGGAAAAGAGCGTAGCGCAACGGG
ACATTGCAGGCGGCACGGCACCCAATCAAGCTAGGCACCAACTCGAGACG
AAGTGGGCTCATTTACTGAAACAATAG
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protein sequence of Gcaud2407.t1

>Gcaud2407.t1 ID=Gcaud2407.t1|Name=Gcaud2407.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=459bp
MSMWGGRFDDRPKEIVAKMGESISYDRRLYRHDIQGSKAHAQMLARQNII
PESDALKITEGLAQIAAEIEQGNFKWSEALEDVHMNIEKRLTDRIGESGA
RLHAGRSRNDQVATDIRLYLRDEVEVIRTCVVNVQRALVELANQHTDTVM
PGFTHLQHAQPIVLAHYLLAYTEMFQRDVLRLDDWRKRMNYLPLGSSALA
GSTLPLDRKWVAQELGFDGLCDNSLDAVSDRDFVIELVSVCSMIMMHLSR
MSEDIIFWMSQEAGWVDLGDGFCTGSSLMPQKKNPDMCELTRGKTARVYG
NLTTLLTIMKGIPLAYNRDMQEDKEPVFDTVDTVKLVLSVYAPMIKSMKV
NKERMYEAACDPALMATDLAEWLVKQGMPFRDSHERVGELVGYSIKIGVP
LDQLTLEQMKSKIPEANEECLQLWKPEKSVAQRDIAGGTAPNQARHQLET
KWAHLLKQ*
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mRNA from alignment at NODE_808_length_17683_cov_4.001592:244..1620-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2407.t1 ID=Gcaud2407.t1|Name=Gcaud2407.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at NODE_808_length_17683_cov_4.001592:244..1620- (Gracilaria caudata M_176_S67 male)
ATGTCGATGTGGGGCGGTCGTTTTGATGACAGGCCAAAAGAGATCGTCGC
CAAGATGGGCGAATCCATCTCCTACGATCGTCGTCTATACCGGCATGACA
TTCAAGGCTCCAAAGCGCACGCCCAGATGCTCGCAAGACAAAACATCATC
CCCGAATCGGACGCCCTCAAAATCACAGAAGGTCTTGCACAAATCGCAGC
CGAGATTGAACAAGGCAACTTCAAATGGTCAGAAGCACTGGAAGACGTGC
ACATGAACATTGAAAAACGTCTCACCGACCGTATAGGCGAATCTGGAGCT
CGATTACATGCCGGTCGCTCTCGTAACGATCAGGTTGCAACTGATATTCG
CTTGTATTTACGCGATGAAGTCGAAGTGATTCGTACGTGTGTCGTCAATG
TTCAGCGCGCTTTGGTTGAGTTGGCGAATCAACATACGGATACAGTTATG
CCTGGTTTCACTCATCTGCAGCATGCGCAACCTATTGTGTTGGCACACTA
TCTTTTGGCATACACGGAAATGTTTCAGCGCGATGTTCTCAGACTTGATG
ATTGGCGGAAACGAATGAATTATCTTCCGTTGGGGTCTAGTGCGTTAGCT
GGTTCTACCTTGCCGTTGGATAGGAAGTGGGTGGCTCAAGAACTGGGCTT
TGATGGTTTGTGTGACAACTCACTTGACGCTGTCAGCGATCGCGATTTTG
TCATTGAGCTTGTCTCGGTGTGCAGCATGATCATGATGCACTTGTCCCGA
ATGAGTGAGGATATCATATTCTGGATGAGTCAGGAGGCGGGTTGGGTCGA
TTTGGGCGATGGATTTTGCACCGGAAGTTCCCTCATGCCGCAGAAGAAGA
ACCCGGACATGTGCGAACTCACGAGAGGAAAGACCGCTCGCGTGTACGGC
AATCTCACCACGTTGTTGACTATCATGAAAGGCATTCCACTAGCGTACAA
CCGAGACATGCAGGAAGACAAGGAGCCTGTGTTCGACACGGTCGATACGG
TCAAGCTTGTGCTCTCCGTCTACGCGCCCATGATCAAGTCAATGAAGGTC
AACAAGGAACGCATGTACGAAGCCGCATGCGACCCGGCGCTTATGGCAAC
CGATTTGGCGGAGTGGCTCGTCAAGCAAGGCATGCCGTTCCGGGACTCCC
ATGAACGAGTTGGCGAGTTAGTCGGATACAGCATAAAGATTGGCGTGCCA
CTTGACCAACTGACTCTTGAGCAGATGAAAAGCAAAATTCCAGAGGCCAA
CGAGGAGTGCTTGCAACTTTGGAAACCGGAAAAGAGCGTAGCGCAACGGG
ACATTGCAGGCGGCACGGCACCCAATCAAGCTAGGCACCAACTCGAGACG
AAGTGGGCTCATTTACTGAAACAATAG
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Coding sequence (CDS) from alignment at NODE_808_length_17683_cov_4.001592:244..1620-

>Gcaud2407.t1 ID=Gcaud2407.t1|Name=Gcaud2407.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1377bp|location=Sequence derived from alignment at NODE_808_length_17683_cov_4.001592:244..1620- (Gracilaria caudata M_176_S67 male)
ATGTCGATGTGGGGCGGTCGTTTTGATGACAGGCCAAAAGAGATCGTCGC
CAAGATGGGCGAATCCATCTCCTACGATCGTCGTCTATACCGGCATGACA
TTCAAGGCTCCAAAGCGCACGCCCAGATGCTCGCAAGACAAAACATCATC
CCCGAATCGGACGCCCTCAAAATCACAGAAGGTCTTGCACAAATCGCAGC
CGAGATTGAACAAGGCAACTTCAAATGGTCAGAAGCACTGGAAGACGTGC
ACATGAACATTGAAAAACGTCTCACCGACCGTATAGGCGAATCTGGAGCT
CGATTACATGCCGGTCGCTCTCGTAACGATCAGGTTGCAACTGATATTCG
CTTGTATTTACGCGATGAAGTCGAAGTGATTCGTACGTGTGTCGTCAATG
TTCAGCGCGCTTTGGTTGAGTTGGCGAATCAACATACGGATACAGTTATG
CCTGGTTTCACTCATCTGCAGCATGCGCAACCTATTGTGTTGGCACACTA
TCTTTTGGCATACACGGAAATGTTTCAGCGCGATGTTCTCAGACTTGATG
ATTGGCGGAAACGAATGAATTATCTTCCGTTGGGGTCTAGTGCGTTAGCT
GGTTCTACCTTGCCGTTGGATAGGAAGTGGGTGGCTCAAGAACTGGGCTT
TGATGGTTTGTGTGACAACTCACTTGACGCTGTCAGCGATCGCGATTTTG
TCATTGAGCTTGTCTCGGTGTGCAGCATGATCATGATGCACTTGTCCCGA
ATGAGTGAGGATATCATATTCTGGATGAGTCAGGAGGCGGGTTGGGTCGA
TTTGGGCGATGGATTTTGCACCGGAAGTTCCCTCATGCCGCAGAAGAAGA
ACCCGGACATGTGCGAACTCACGAGAGGAAAGACCGCTCGCGTGTACGGC
AATCTCACCACGTTGTTGACTATCATGAAAGGCATTCCACTAGCGTACAA
CCGAGACATGCAGGAAGACAAGGAGCCTGTGTTCGACACGGTCGATACGG
TCAAGCTTGTGCTCTCCGTCTACGCGCCCATGATCAAGTCAATGAAGGTC
AACAAGGAACGCATGTACGAAGCCGCATGCGACCCGGCGCTTATGGCAAC
CGATTTGGCGGAGTGGCTCGTCAAGCAAGGCATGCCGTTCCGGGACTCCC
ATGAACGAGTTGGCGAGTTAGTCGGATACAGCATAAAGATTGGCGTGCCA
CTTGACCAACTGACTCTTGAGCAGATGAAAAGCAAAATTCCAGAGGCCAA
CGAGGAGTGCTTGCAACTTTGGAAACCGGAAAAGAGCGTAGCGCAACGGG
ACATTGCAGGCGGCACGGCACCCAATCAAGCTAGGCACCAACTCGAGACG
AAGTGGGCTCATTTACTGAAACAATAG
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