Gcaud2389.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2389.t1
Unique NameGcaud2389.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_830_length_17382_cov_5.634087contigNODE_830_length_17382_cov_5.634087:16164..16808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004990931.1
Preferred nameLENG9
PFAMsAKAP7_NLS,DUF504,zf-CCCH
Max annot lvl33154|Opisthokonta
Evalue3.25e-10
EggNOG OGs28I8M@1|root,2QQIY@2759|Eukaryota,39UZC@33154|Opisthokonta
Descriptionleukocyte receptor cluster
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2389Gcaud2389Gracilaria caudata M_176_S67 malegeneNODE_830_length_17382_cov_5.634087 16164..16808 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2389.t1.start1Gcaud2389.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_830_length_17382_cov_5.634087 16164..16166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2389.t1.CDS1Gcaud2389.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_830_length_17382_cov_5.634087 16164..16808 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2389.t1.exon1Gcaud2389.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_830_length_17382_cov_5.634087 16164..16808 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2389.t1.stop1Gcaud2389.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_830_length_17382_cov_5.634087 16806..16808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2389.t1Gcaud2389.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_830_length_17382_cov_5.634087 16164..16808 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2389.t1 ID=Gcaud2389.t1|Name=Gcaud2389.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MDLPPRLARALKLHRKAGPIHSLHVFDFDGTLVRTPGPEEGKRRYTLETG
HVWTGGWWGRPGSLMPPVVESPFPASRVVRTVFEQMEEVITRSQTAVGVV
VTGRIKPVREPVLRILDEICIAAKNDTVAPGESFLDHDAVITHPGGRRTT
LEFKEDLFRQLVTDGPLASCPLKELHIWEDRQIHAEAFATDLNDELLKLK
TIKTTVHLVTAETP*
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spliced messenger RNA

>Gcaud2389.t1 ID=Gcaud2389.t1|Name=Gcaud2389.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:16164..16808+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTTCCTCCTCGATTGGCCAGGGCACTGAAGCTGCACCGAAAGGC
CGGTCCGATACATTCTCTGCATGTGTTCGACTTCGACGGCACTCTAGTGC
GCACGCCGGGTCCAGAAGAAGGGAAGCGGAGATATACATTGGAAACAGGC
CATGTGTGGACAGGAGGCTGGTGGGGTCGCCCCGGCAGCCTAATGCCGCC
GGTCGTAGAGTCACCATTTCCTGCATCTCGAGTTGTGCGCACCGTGTTCG
AGCAAATGGAGGAGGTGATCACGCGCTCGCAAACGGCAGTTGGAGTGGTT
GTGACTGGTAGGATAAAGCCCGTGCGAGAGCCTGTGCTTCGAATTTTGGA
CGAGATCTGCATCGCCGCGAAGAATGACACGGTAGCTCCCGGGGAGTCAT
TCCTTGACCACGACGCGGTGATCACTCACCCTGGTGGACGTCGTACAACG
CTAGAATTCAAGGAAGACCTGTTCAGACAATTAGTAACAGACGGGCCGCT
GGCGTCATGCCCGCTGAAGGAGCTACACATTTGGGAGGACCGGCAAATCC
ACGCTGAGGCATTTGCCACTGATCTGAACGACGAACTCCTGAAGCTCAAG
ACAATCAAGACCACTGTTCATCTCGTAACAGCAGAGACGCCCTGA
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protein sequence of Gcaud2389.t1

>Gcaud2389.t1 ID=Gcaud2389.t1|Name=Gcaud2389.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MDLPPRLARALKLHRKAGPIHSLHVFDFDGTLVRTPGPEEGKRRYTLETG
HVWTGGWWGRPGSLMPPVVESPFPASRVVRTVFEQMEEVITRSQTAVGVV
VTGRIKPVREPVLRILDEICIAAKNDTVAPGESFLDHDAVITHPGGRRTT
LEFKEDLFRQLVTDGPLASCPLKELHIWEDRQIHAEAFATDLNDELLKLK
TIKTTVHLVTAETP*
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mRNA from alignment at NODE_830_length_17382_cov_5.634087:16164..16808+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2389.t1 ID=Gcaud2389.t1|Name=Gcaud2389.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:16164..16808+ (Gracilaria caudata M_176_S67 male)
ATGGACCTTCCTCCTCGATTGGCCAGGGCACTGAAGCTGCACCGAAAGGC
CGGTCCGATACATTCTCTGCATGTGTTCGACTTCGACGGCACTCTAGTGC
GCACGCCGGGTCCAGAAGAAGGGAAGCGGAGATATACATTGGAAACAGGC
CATGTGTGGACAGGAGGCTGGTGGGGTCGCCCCGGCAGCCTAATGCCGCC
GGTCGTAGAGTCACCATTTCCTGCATCTCGAGTTGTGCGCACCGTGTTCG
AGCAAATGGAGGAGGTGATCACGCGCTCGCAAACGGCAGTTGGAGTGGTT
GTGACTGGTAGGATAAAGCCCGTGCGAGAGCCTGTGCTTCGAATTTTGGA
CGAGATCTGCATCGCCGCGAAGAATGACACGGTAGCTCCCGGGGAGTCAT
TCCTTGACCACGACGCGGTGATCACTCACCCTGGTGGACGTCGTACAACG
CTAGAATTCAAGGAAGACCTGTTCAGACAATTAGTAACAGACGGGCCGCT
GGCGTCATGCCCGCTGAAGGAGCTACACATTTGGGAGGACCGGCAAATCC
ACGCTGAGGCATTTGCCACTGATCTGAACGACGAACTCCTGAAGCTCAAG
ACAATCAAGACCACTGTTCATCTCGTAACAGCAGAGACGCCCTGA
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Coding sequence (CDS) from alignment at NODE_830_length_17382_cov_5.634087:16164..16808+

>Gcaud2389.t1 ID=Gcaud2389.t1|Name=Gcaud2389.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:16164..16808+ (Gracilaria caudata M_176_S67 male)
ATGGACCTTCCTCCTCGATTGGCCAGGGCACTGAAGCTGCACCGAAAGGC
CGGTCCGATACATTCTCTGCATGTGTTCGACTTCGACGGCACTCTAGTGC
GCACGCCGGGTCCAGAAGAAGGGAAGCGGAGATATACATTGGAAACAGGC
CATGTGTGGACAGGAGGCTGGTGGGGTCGCCCCGGCAGCCTAATGCCGCC
GGTCGTAGAGTCACCATTTCCTGCATCTCGAGTTGTGCGCACCGTGTTCG
AGCAAATGGAGGAGGTGATCACGCGCTCGCAAACGGCAGTTGGAGTGGTT
GTGACTGGTAGGATAAAGCCCGTGCGAGAGCCTGTGCTTCGAATTTTGGA
CGAGATCTGCATCGCCGCGAAGAATGACACGGTAGCTCCCGGGGAGTCAT
TCCTTGACCACGACGCGGTGATCACTCACCCTGGTGGACGTCGTACAACG
CTAGAATTCAAGGAAGACCTGTTCAGACAATTAGTAACAGACGGGCCGCT
GGCGTCATGCCCGCTGAAGGAGCTACACATTTGGGAGGACCGGCAAATCC
ACGCTGAGGCATTTGCCACTGATCTGAACGACGAACTCCTGAAGCTCAAG
ACAATCAAGACCACTGTTCATCTCGTAACAGCAGAGACGCCCTGA
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