Gcaud2388.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2388.t1
Unique Name	Gcaud2388.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_830_length_17382_cov_5.634087	contig	NODE_830_length_17382_cov_5.634087:11726..12928 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1337936.IJ00_23210
Preferred name	hycB
PFAMs	Fer4,Fer4_6,Fer4_9,LdpA_C
Max annot lvl	1117\|Cyanobacteria
Evalue	1.04e-61
EggNOG OGs	COG1142@1\|root,COG1142@2\|Bacteria,1G130@1117\|Cyanobacteria,1HJ0R@1161\|Nostocales
Description	Iron-Sulfur binding protein C terminal
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2388	Gcaud2388	Gracilaria caudata M_176_S67 male	gene	NODE_830_length_17382_cov_5.634087 11726..12928 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2388.t1	Gcaud2388.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_830_length_17382_cov_5.634087 11726..12928 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2388.t1.stop1	Gcaud2388.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_830_length_17382_cov_5.634087 11726..11728 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2388.t1.CDS1	Gcaud2388.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_830_length_17382_cov_5.634087 11726..11848 -
Gcaud2388.t1.CDS2	Gcaud2388.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_830_length_17382_cov_5.634087 11944..12524 -
Gcaud2388.t1.CDS3	Gcaud2388.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_830_length_17382_cov_5.634087 12604..12928 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2388.t1.exon1	Gcaud2388.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_830_length_17382_cov_5.634087 11726..11848 -
Gcaud2388.t1.exon2	Gcaud2388.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_830_length_17382_cov_5.634087 11944..12524 -
Gcaud2388.t1.exon3	Gcaud2388.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_830_length_17382_cov_5.634087 12604..12928 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2388.t1.intron1	Gcaud2388.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_830_length_17382_cov_5.634087 11849..11943 -
Gcaud2388.t1.intron2	Gcaud2388.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_830_length_17382_cov_5.634087 12525..12603 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2388.t1.start1	Gcaud2388.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_830_length_17382_cov_5.634087 12926..12928 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_830_length_17382_cov_5.634087:11726..12928-
coding sequence from alignment at NODE_830_length_17382_cov_5.634087:11726..12928-

mRNA sequence

>Gcaud2388.t1 ID=Gcaud2388.t1|Name=Gcaud2388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=343bp
MFSDIHVNNGAKHKSKRICVVGEWDMVQTYHDAPSIRNLCEVYTIAGVDC
IDVAADESIIRAAKEGICSGLARGFSQADQRPLLMISINDDSDPHFRKAV
FEVKDCLTAYGCGRCIPVCPISIVHASEYVHTLPHVKTILSGGIDYVEIH
TGRGHLEQFANTWEGIEDAVVHNLKLVAVSFPDLGTDAEMGYALREMWTV
MSRSRRFLDAELTLVWQTDGRPMSGDIGDVTATKSVKLAQRVVWLLKRKS
IPGHVQLAGGTNSSTVARMGDAGLLRWSNGAHTTRNSMHTASGIAVGGYA
RKIVKEKLPDKYDTPLSDEELLAAVEVASRLVFSLKSHYLKR*

spliced messenger RNA

>Gcaud2388.t1 ID=Gcaud2388.t1|Name=Gcaud2388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:11726..12928- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCAGACATCCATGTTAATAATGGAGCTAAGCACAAGTCAAAGAG
GATTTGCGTCGTTGGAGAATGGGACATGGTTCAAACTTATCACGACGCAC
CTTCAATTCGTAATCTATGTGAAGTGTATACCATAGCTGGTGTGGATTGC
ATCGATGTTGCCGCGGATGAAAGCATCATTCGGGCAGCAAAAGAAGGAAT
TTGTTCCGGTCTCGCTCGGGGATTTAGCCAAGCCGATCAAAGACCTCTCT
TGATGATATCCATCAACGATGATTCAGATCCTCACTTTCGAAAGGCGGTG
TTTGAAGTTAAAGACTGCTTGACAGCCTATGGCTGTGGAAGATGTATTCC
TGTGTGCCCGATTAGTATCGTGCATGCCTCAGAATACGTGCATACCCTCC
CACACGTGAAAACTATTTTATCAGGTGGGATAGACTACGTGGAAATCCAC
ACTGGAAGGGGACATTTGGAACAGTTTGCCAACACTTGGGAAGGTATAGA
AGATGCAGTTGTACATAATCTAAAGCTGGTTGCGGTTTCTTTCCCTGATC
TTGGGACCGATGCGGAAATGGGATATGCGTTGCGTGAAATGTGGACCGTA
ATGTCGAGAAGCCGGCGGTTTCTCGACGCGGAGCTCACACTAGTTTGGCA
AACGGATGGTAGGCCAATGAGCGGAGATATCGGAGACGTTACCGCCACGA
AATCTGTTAAACTTGCACAAAGAGTGGTCTGGCTGCTGAAAAGAAAGAGC
ATTCCAGGACATGTTCAACTGGCTGGCGGGACAAACTCATCGACTGTCGC
GCGAATGGGAGATGCTGGGTTGCTCCGATGGTCAAATGGAGCGCATACAA
CGCGGAATTCAATGCATACGGCCAGCGGAATTGCGGTAGGCGGTTATGCA
AGGAAGATTGTGAAAGAGAAGCTGCCTGATAAATATGATACCCCTTTAAG
CGATGAGGAACTTCTTGCAGCAGTAGAAGTAGCCTCAAGATTGGTATTCA
GCCTGAAGTCCCACTATCTGAAGCGTTAA

protein sequence of Gcaud2388.t1

>Gcaud2388.t1 ID=Gcaud2388.t1|Name=Gcaud2388.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=343bp
MFSDIHVNNGAKHKSKRICVVGEWDMVQTYHDAPSIRNLCEVYTIAGVDC
IDVAADESIIRAAKEGICSGLARGFSQADQRPLLMISINDDSDPHFRKAV
FEVKDCLTAYGCGRCIPVCPISIVHASEYVHTLPHVKTILSGGIDYVEIH
TGRGHLEQFANTWEGIEDAVVHNLKLVAVSFPDLGTDAEMGYALREMWTV
MSRSRRFLDAELTLVWQTDGRPMSGDIGDVTATKSVKLAQRVVWLLKRKS
IPGHVQLAGGTNSSTVARMGDAGLLRWSNGAHTTRNSMHTASGIAVGGYA
RKIVKEKLPDKYDTPLSDEELLAAVEVASRLVFSLKSHYLKR*

mRNA from alignment at NODE_830_length_17382_cov_5.634087:11726..12928-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2388.t1 ID=Gcaud2388.t1|Name=Gcaud2388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:11726..12928- (Gracilaria caudata M_176_S67 male)
ATGTTCTCAGACATCCATGTTAATAATGGAGCTAAGCACAAGTCAAAGAG
GATTTGCGTCGTTGGAGAATGGGACATGGTTCAAACTTATCACGACGCAC
CTTCAATTCGTAATCTATGTGAAGTGTATACCATAGCTGGTGTGGATTGC
ATCGATGTTGCCGCGGATGAAAGCATCATTCGGGCAGCAAAAGAAGGAAT
TTGTTCCGGTCTCGCTCGGGGATTTAGCCAAGCCGATCAAAGACCTCTCT
TGATGATATCCATCAACGATGATTCAGATCCTCACTTTCGAAAGGCGGTG
TTTGAAGTTAAAGACTGCTTGACAGGTTGCGCACTCCCATGCGAGAAAGT
GTGTCCTGCTGATGCAATTGATTTAACTGGGGTCGTTGCCGATCGTTGCC
ATAGCCTATGGCTGTGGAAGATGTATTCCTGTGTGCCCGATTAGTATCGT
GCATGCCTCAGAATACGTGCATACCCTCCCACACGTGAAAACTATTTTAT
CAGGTGGGATAGACTACGTGGAAATCCACACTGGAAGGGGACATTTGGAA
CAGTTTGCCAACACTTGGGAAGGTATAGAAGATGCAGTTGTACATAATCT
AAAGCTGGTTGCGGTTTCTTTCCCTGATCTTGGGACCGATGCGGAAATGG
GATATGCGTTGCGTGAAATGTGGACCGTAATGTCGAGAAGCCGGCGGTTT
CTCGACGCGGAGCTCACACTAGTTTGGCAAACGGATGGTAGGCCAATGAG
CGGAGATATCGGAGACGTTACCGCCACGAAATCTGTTAAACTTGCACAAA
GAGTGGTCTGGCTGCTGAAAAGAAAGAGCATTCCAGGACATGTTCAACTG
GCTGGCGGGACAAACTCATCGACTGTCGCGCGAATGGGAGATGCTGGGTT
GCTCCGATGGTCAAATGGAGCGCATACAACGCGGAATTCAATGCATACGG
CCAGCGGAATTGCGGTAGGCGGTTATGCAAGGAAGGTACGTTGAGGAGCT
TTTCATCGCAAAGTACATGAACAGCTTGGAGAAACATTCCTGCTCAGGAC
GCTAACCAAAATTGTCCTCCTGTTTTGCAGATTGTGAAAGAGAAGCTGCC
TGATAAATATGATACCCCTTTAAGCGATGAGGAACTTCTTGCAGCAGTAG
AAGTAGCCTCAAGATTGGTATTCAGCCTGAAGTCCCACTATCTGAAGCGT
TAA

Coding sequence (CDS) from alignment at NODE_830_length_17382_cov_5.634087:11726..12928-

>Gcaud2388.t1 ID=Gcaud2388.t1|Name=Gcaud2388.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1029bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:11726..12928- (Gracilaria caudata M_176_S67 male)
ATGTTCTCAGACATCCATGTTAATAATGGAGCTAAGCACAAGTCAAAGAG
GATTTGCGTCGTTGGAGAATGGGACATGGTTCAAACTTATCACGACGCAC
CTTCAATTCGTAATCTATGTGAAGTGTATACCATAGCTGGTGTGGATTGC
ATCGATGTTGCCGCGGATGAAAGCATCATTCGGGCAGCAAAAGAAGGAAT
TTGTTCCGGTCTCGCTCGGGGATTTAGCCAAGCCGATCAAAGACCTCTCT
TGATGATATCCATCAACGATGATTCAGATCCTCACTTTCGAAAGGCGGTG
TTTGAAGTTAAAGACTGCTTGACAGCCTATGGCTGTGGAAGATGTATTCC
TGTGTGCCCGATTAGTATCGTGCATGCCTCAGAATACGTGCATACCCTCC
CACACGTGAAAACTATTTTATCAGGTGGGATAGACTACGTGGAAATCCAC
ACTGGAAGGGGACATTTGGAACAGTTTGCCAACACTTGGGAAGGTATAGA
AGATGCAGTTGTACATAATCTAAAGCTGGTTGCGGTTTCTTTCCCTGATC
TTGGGACCGATGCGGAAATGGGATATGCGTTGCGTGAAATGTGGACCGTA
ATGTCGAGAAGCCGGCGGTTTCTCGACGCGGAGCTCACACTAGTTTGGCA
AACGGATGGTAGGCCAATGAGCGGAGATATCGGAGACGTTACCGCCACGA
AATCTGTTAAACTTGCACAAAGAGTGGTCTGGCTGCTGAAAAGAAAGAGC
ATTCCAGGACATGTTCAACTGGCTGGCGGGACAAACTCATCGACTGTCGC
GCGAATGGGAGATGCTGGGTTGCTCCGATGGTCAAATGGAGCGCATACAA
CGCGGAATTCAATGCATACGGCCAGCGGAATTGCGGTAGGCGGTTATGCA
AGGAAGATTGTGAAAGAGAAGCTGCCTGATAAATATGATACCCCTTTAAG
CGATGAGGAACTTCTTGCAGCAGTAGAAGTAGCCTCAAGATTGGTATTCA
GCCTGAAGTCCCACTATCTGAAGCGTTAA