Gcaud2384.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2384.t1
Unique NameGcaud2384.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_830_length_17382_cov_5.634087contigNODE_830_length_17382_cov_5.634087:2939..3863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313612.L8106_03192
PFAMsABC_tran
Max annot lvl1117|Cyanobacteria
KEGG koko:K16786
KEGG TC3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35
KEGG Pathwayko02010,map02010
KEGG ModuleM00582
Evalue3.63e-49
EggNOG OGsCOG1122@1|root,COG1122@2|Bacteria,1G0FZ@1117|Cyanobacteria,1H71U@1150|Oscillatoriales
DescriptionABC-type cobalt transport system ATPase component
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2384Gcaud2384Gracilaria caudata M_176_S67 malegeneNODE_830_length_17382_cov_5.634087 2939..3863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2384.t1Gcaud2384.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_830_length_17382_cov_5.634087 2939..3863 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2384.t1.start1Gcaud2384.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_830_length_17382_cov_5.634087 2939..2941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2384.t1.CDS1Gcaud2384.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_830_length_17382_cov_5.634087 2939..3390 +
Gcaud2384.t1.CDS2Gcaud2384.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_830_length_17382_cov_5.634087 3641..3688 +
Gcaud2384.t1.CDS3Gcaud2384.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_830_length_17382_cov_5.634087 3767..3863 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2384.t1.exon1Gcaud2384.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_830_length_17382_cov_5.634087 2939..3390 +
Gcaud2384.t1.exon2Gcaud2384.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_830_length_17382_cov_5.634087 3641..3688 +
Gcaud2384.t1.exon3Gcaud2384.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_830_length_17382_cov_5.634087 3767..3863 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2384.t1.intron1Gcaud2384.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_830_length_17382_cov_5.634087 3391..3640 +
Gcaud2384.t1.intron2Gcaud2384.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_830_length_17382_cov_5.634087 3689..3766 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2384.t1.stop1Gcaud2384.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_830_length_17382_cov_5.634087 3861..3863 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2384.t1 ID=Gcaud2384.t1|Name=Gcaud2384.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=199bp
MILGQNGSGKSTLLRILRGVLSPSTGDVHLEKPCAYVQQNPDLQILLPTI
GTDIAFSMPKNPKTRPSEVRQAVINALDAVGLTPPEDFLRKSSYRLSGGQ
RQRAAIAAALAMEPRTILFDEVTASMDPFNKAELVSRIRNIVTERSMAAI
WVTHLLDELDYADSIAIMNNGNIVAHGPRVAMMPLVLDLQDEVEHSQP*
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spliced messenger RNA

>Gcaud2384.t1 ID=Gcaud2384.t1|Name=Gcaud2384.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:2939..3863+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCTGGGACAGAATGGCAGCGGAAAGAGTACTCTTCTTCGAATTCT
TCGCGGTGTTCTGTCTCCTTCTACTGGAGATGTGCACCTCGAGAAGCCCT
GTGCTTACGTGCAGCAGAACCCCGACTTGCAAATACTACTGCCAACTATT
GGAACGGATATTGCCTTCTCCATGCCGAAGAACCCGAAGACACGGCCTTC
GGAGGTTCGTCAGGCCGTCATCAACGCTCTTGATGCCGTGGGGTTGACGC
CTCCTGAAGACTTCTTGCGAAAGTCGTCTTACAGGCTGAGCGGTGGCCAG
CGACAGCGCGCTGCAATTGCGGCAGCTCTGGCTATGGAGCCAAGGACAAT
TCTTTTCGATGAAGTTACAGCGAGTATGGATCCCTTTAATAAAGCAGAGC
TTGTTTCAAGGATCCGAAATATCGTTACTGAACGGAGCATGGCTGCAATA
TGGGTTACTCACTTGTTGGACGAGTTAGACTACGCCGATAGCATAGCAAT
AATGAACAACGGTAATATAGTTGCACATGGACCAAGAGTCGCAATGATGC
CTCTTGTACTTGATTTACAAGATGAAGTGGAACACTCACAGCCATGA
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protein sequence of Gcaud2384.t1

>Gcaud2384.t1 ID=Gcaud2384.t1|Name=Gcaud2384.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MILGQNGSGKSTLLRILRGVLSPSTGDVHLEKPCAYVQQNPDLQILLPTI
GTDIAFSMPKNPKTRPSEVRQAVINALDAVGLTPPEDFLRKSSYRLSGGQ
RQRAAIAAALAMEPRTILFDEVTASMDPFNKAELVSRIRNIVTERSMAAI
WVTHLLDELDYADSIAIMNNGNIVAHGPRVAMMPLVLDLQDEVEHSQP*
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mRNA from alignment at NODE_830_length_17382_cov_5.634087:2939..3863+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2384.t1 ID=Gcaud2384.t1|Name=Gcaud2384.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=925bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:2939..3863+ (Gracilaria caudata M_176_S67 male)
ATGATCCTGGGACAGAATGGCAGCGGAAAGAGTACTCTTCTTCGAATTCT
TCGCGGTGTTCTGTCTCCTTCTACTGGAGATGTGCACCTCGAGAAGCCCT
GTGCTTACGTGCAGCAGAACCCCGACTTGCAAATACTACTGCCAACTATT
GGAACGGATATTGCCTTCTCCATGCCGAAGAACCCGAAGACACGGCCTTC
GGAGGTTCGTCAGGCCGTCATCAACGCTCTTGATGCCGTGGGGTTGACGC
CTCCTGAAGACTTCTTGCGAAAGTCGTCTTACAGGCTGAGCGGTGGCCAG
CGACAGCGCGCTGCAATTGCGGCAGCTCTGGCTATGGAGCCAAGGACAAT
TCTTTTCGATGAAGTTACAGCGAGTATGGATCCCTTTAATAAAGCAGAGC
TTGTTTCAAGGATCCGAAATATCGTTACTGAACGGAGCATGGCTGCAATA
TGGTAAGTTACGCTCTCATGAATGATGCGAGGAAAGCATTTTTCGAAGGC
CGCCCAGAGAAACTTTGCTCATGCAATAAGCACCTCTGGTTGTCGGCTCA
AAATGAATGCAAGATCAACATGTGACAGCTATCGTGTTGCTGTTCTTGTT
TGCTCATAGCAGTTCAGTGTCAATTCATGCCTCACACATCTCATTGTTTG
GTCCCAGATATATACTGACAAAAGAATGTTTGTGCTGGTTTTGGAATGTA
AGGGTTACTCACTTGTTGGACGAGTTAGACTACGCCGATAGCATAGCAAT
GTGAGTAATTTCAAATCCAAGTTGCCACAAAGTGGTTGTTGCTAACGGTT
TGCAATCATGACCCTTTTCTGCGTTCAGAATGAACAACGGTAATATAGTT
GCACATGGACCAAGAGTCGCAATGATGCCTCTTGTACTTGATTTACAAGA
TGAAGTGGAACACTCACAGCCATGA
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Coding sequence (CDS) from alignment at NODE_830_length_17382_cov_5.634087:2939..3863+

>Gcaud2384.t1 ID=Gcaud2384.t1|Name=Gcaud2384.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=597bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:2939..3863+ (Gracilaria caudata M_176_S67 male)
ATGATCCTGGGACAGAATGGCAGCGGAAAGAGTACTCTTCTTCGAATTCT
TCGCGGTGTTCTGTCTCCTTCTACTGGAGATGTGCACCTCGAGAAGCCCT
GTGCTTACGTGCAGCAGAACCCCGACTTGCAAATACTACTGCCAACTATT
GGAACGGATATTGCCTTCTCCATGCCGAAGAACCCGAAGACACGGCCTTC
GGAGGTTCGTCAGGCCGTCATCAACGCTCTTGATGCCGTGGGGTTGACGC
CTCCTGAAGACTTCTTGCGAAAGTCGTCTTACAGGCTGAGCGGTGGCCAG
CGACAGCGCGCTGCAATTGCGGCAGCTCTGGCTATGGAGCCAAGGACAAT
TCTTTTCGATGAAGTTACAGCGAGTATGGATCCCTTTAATAAAGCAGAGC
TTGTTTCAAGGATCCGAAATATCGTTACTGAACGGAGCATGGCTGCAATA
TGGGTTACTCACTTGTTGGACGAGTTAGACTACGCCGATAGCATAGCAAT
AATGAACAACGGTAATATAGTTGCACATGGACCAAGAGTCGCAATGATGC
CTCTTGTACTTGATTTACAAGATGAAGTGGAACACTCACAGCCATGA
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