Gcaud2375.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2375.t1
Unique Name	Gcaud2375.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2154_length_6647_cov_5.294539	contig	NODE_2154_length_6647_cov_5.294539:4927..6429 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2375	Gcaud2375	Gracilaria caudata M_176_S67 male	gene	NODE_2154_length_6647_cov_5.294539 4927..6429 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2375.t1.stop1	Gcaud2375.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2154_length_6647_cov_5.294539 4927..4929 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2375.t1.CDS1	Gcaud2375.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2154_length_6647_cov_5.294539 4927..6429 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2375.t1.exon1	Gcaud2375.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2154_length_6647_cov_5.294539 4927..6429 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2375.t1.start1	Gcaud2375.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2154_length_6647_cov_5.294539 6427..6429 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2375.t1	Gcaud2375.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2154_length_6647_cov_5.294539 4927..6429 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2154_length_6647_cov_5.294539:4927..6429-
coding sequence from alignment at NODE_2154_length_6647_cov_5.294539:4927..6429-

mRNA sequence

>Gcaud2375.t1 ID=Gcaud2375.t1|Name=Gcaud2375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MSHSSSIVRHFGHLFTLSCCRIVQENDEYMEKPDMYLPSVDFLKQSLKKE
KSGDALVQKLLGQYQLIFSKKVDKRKTILMNAAVVKSAGNILEAENSIRA
GLRVAPKETVMMVMNQNLFSRLVLQACTSEDKRLSQRLWHLSADVLNHSF
LFPQTTKYEAEVFLSVVSGLGKESQVCIDAIENMITTALANPYGLYDHLK
MIVPLKDGASPPISLFFIAALLRIRKLKEQRKSSQGMSESDEKLFEASLV
RIVGFIVASIIVLDPNTERNFSLMTSVSRFVSTDAFWWDFNNDDEPVESK
AHVVRACLHLRELLHNRGTYPGTPFFTLLSSLCECFLRCSSNEHEGIKTL
SELHGIDVSWDSWRELRSGELAPYTRCCSDLETNAVQRFFLHFCTAKGIS
GHTVEDQLRSLKRSLPKKDYVVLFSATLRSTTFPHVRDMLLPELLAELHL
RQRQRPGVEGDIILSRNSFDYFVQRKWAMGPRLNSGDYVLLYEHIGSVWH
*

spliced messenger RNA

>Gcaud2375.t1 ID=Gcaud2375.t1|Name=Gcaud2375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_2154_length_6647_cov_5.294539:4927..6429- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCATAGTTCTTCCATTGTACGACATTTTGGGCATCTCTTCACTCT
TTCATGCTGTCGTATCGTTCAGGAGAACGACGAGTACATGGAGAAGCCCG
ACATGTATTTGCCTTCAGTAGATTTTCTCAAACAGAGCCTTAAGAAAGAG
AAATCGGGGGATGCCTTGGTGCAAAAACTTTTGGGTCAGTATCAACTGAT
TTTCTCAAAGAAGGTTGACAAACGGAAAACGATATTGATGAATGCGGCAG
TCGTGAAGAGTGCGGGAAACATCTTAGAGGCAGAGAACTCAATAAGAGCT
GGCCTTCGGGTTGCTCCAAAGGAAACAGTTATGATGGTAATGAATCAGAA
TCTTTTCTCTCGATTAGTGTTGCAAGCATGTACTTCAGAAGACAAACGAC
TGTCACAAAGATTGTGGCATCTTTCCGCTGACGTGTTGAATCATTCTTTC
CTGTTTCCCCAGACCACAAAATACGAGGCCGAAGTGTTTCTATCCGTGGT
ATCTGGGCTTGGAAAGGAAAGCCAAGTTTGCATCGATGCCATTGAGAACA
TGATTACTACGGCCTTGGCAAATCCGTATGGTCTGTATGACCACCTGAAG
ATGATCGTGCCCCTTAAGGACGGCGCATCTCCTCCGATCTCTTTGTTTTT
CATAGCTGCGCTGCTACGTATTCGCAAGCTCAAAGAACAAAGGAAATCTT
CGCAGGGAATGTCGGAATCTGACGAGAAGCTCTTTGAGGCGTCGCTTGTT
CGTATCGTAGGATTCATTGTTGCGAGTATTATTGTTCTGGATCCTAACAC
CGAGAGAAACTTTTCGTTAATGACCTCTGTCTCCAGGTTTGTTTCAACAG
ATGCGTTCTGGTGGGACTTCAACAATGATGATGAACCGGTCGAGAGCAAA
GCACATGTTGTCAGAGCCTGTTTACATCTTAGGGAGTTGCTACATAACCG
TGGTACTTATCCAGGAACACCCTTTTTTACGCTCTTGTCCTCACTTTGTG
AATGCTTTCTACGATGTTCTTCCAATGAACACGAGGGCATCAAAACTCTT
TCTGAACTACATGGCATAGATGTTTCCTGGGACTCGTGGCGGGAGCTTAG
AAGCGGAGAACTGGCGCCGTATACTAGGTGTTGTTCCGATCTGGAAACGA
ACGCGGTACAGCGGTTCTTCCTCCATTTCTGCACCGCTAAGGGGATTTCG
GGACACACGGTTGAGGATCAGCTAAGATCCCTTAAGCGATCACTGCCCAA
GAAGGATTACGTAGTTCTTTTCAGCGCTACGCTTCGCTCAACGACTTTTC
CGCATGTTCGTGATATGCTTCTTCCAGAGCTCCTTGCTGAATTGCACTTA
CGGCAACGGCAAAGACCTGGAGTCGAAGGAGATATTATTCTGTCTAGGAA
TAGCTTTGATTACTTCGTTCAGAGGAAGTGGGCAATGGGACCAAGACTCA
ATTCAGGCGATTATGTCCTCCTGTATGAGCATATTGGAAGCGTGTGGCAC
TGA

protein sequence of Gcaud2375.t1

>Gcaud2375.t1 ID=Gcaud2375.t1|Name=Gcaud2375.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MSHSSSIVRHFGHLFTLSCCRIVQENDEYMEKPDMYLPSVDFLKQSLKKE
KSGDALVQKLLGQYQLIFSKKVDKRKTILMNAAVVKSAGNILEAENSIRA
GLRVAPKETVMMVMNQNLFSRLVLQACTSEDKRLSQRLWHLSADVLNHSF
LFPQTTKYEAEVFLSVVSGLGKESQVCIDAIENMITTALANPYGLYDHLK
MIVPLKDGASPPISLFFIAALLRIRKLKEQRKSSQGMSESDEKLFEASLV
RIVGFIVASIIVLDPNTERNFSLMTSVSRFVSTDAFWWDFNNDDEPVESK
AHVVRACLHLRELLHNRGTYPGTPFFTLLSSLCECFLRCSSNEHEGIKTL
SELHGIDVSWDSWRELRSGELAPYTRCCSDLETNAVQRFFLHFCTAKGIS
GHTVEDQLRSLKRSLPKKDYVVLFSATLRSTTFPHVRDMLLPELLAELHL
RQRQRPGVEGDIILSRNSFDYFVQRKWAMGPRLNSGDYVLLYEHIGSVWH
*

mRNA from alignment at NODE_2154_length_6647_cov_5.294539:4927..6429-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2375.t1 ID=Gcaud2375.t1|Name=Gcaud2375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_2154_length_6647_cov_5.294539:4927..6429- (Gracilaria caudata M_176_S67 male)
ATGAGCCATAGTTCTTCCATTGTACGACATTTTGGGCATCTCTTCACTCT
TTCATGCTGTCGTATCGTTCAGGAGAACGACGAGTACATGGAGAAGCCCG
ACATGTATTTGCCTTCAGTAGATTTTCTCAAACAGAGCCTTAAGAAAGAG
AAATCGGGGGATGCCTTGGTGCAAAAACTTTTGGGTCAGTATCAACTGAT
TTTCTCAAAGAAGGTTGACAAACGGAAAACGATATTGATGAATGCGGCAG
TCGTGAAGAGTGCGGGAAACATCTTAGAGGCAGAGAACTCAATAAGAGCT
GGCCTTCGGGTTGCTCCAAAGGAAACAGTTATGATGGTAATGAATCAGAA
TCTTTTCTCTCGATTAGTGTTGCAAGCATGTACTTCAGAAGACAAACGAC
TGTCACAAAGATTGTGGCATCTTTCCGCTGACGTGTTGAATCATTCTTTC
CTGTTTCCCCAGACCACAAAATACGAGGCCGAAGTGTTTCTATCCGTGGT
ATCTGGGCTTGGAAAGGAAAGCCAAGTTTGCATCGATGCCATTGAGAACA
TGATTACTACGGCCTTGGCAAATCCGTATGGTCTGTATGACCACCTGAAG
ATGATCGTGCCCCTTAAGGACGGCGCATCTCCTCCGATCTCTTTGTTTTT
CATAGCTGCGCTGCTACGTATTCGCAAGCTCAAAGAACAAAGGAAATCTT
CGCAGGGAATGTCGGAATCTGACGAGAAGCTCTTTGAGGCGTCGCTTGTT
CGTATCGTAGGATTCATTGTTGCGAGTATTATTGTTCTGGATCCTAACAC
CGAGAGAAACTTTTCGTTAATGACCTCTGTCTCCAGGTTTGTTTCAACAG
ATGCGTTCTGGTGGGACTTCAACAATGATGATGAACCGGTCGAGAGCAAA
GCACATGTTGTCAGAGCCTGTTTACATCTTAGGGAGTTGCTACATAACCG
TGGTACTTATCCAGGAACACCCTTTTTTACGCTCTTGTCCTCACTTTGTG
AATGCTTTCTACGATGTTCTTCCAATGAACACGAGGGCATCAAAACTCTT
TCTGAACTACATGGCATAGATGTTTCCTGGGACTCGTGGCGGGAGCTTAG
AAGCGGAGAACTGGCGCCGTATACTAGGTGTTGTTCCGATCTGGAAACGA
ACGCGGTACAGCGGTTCTTCCTCCATTTCTGCACCGCTAAGGGGATTTCG
GGACACACGGTTGAGGATCAGCTAAGATCCCTTAAGCGATCACTGCCCAA
GAAGGATTACGTAGTTCTTTTCAGCGCTACGCTTCGCTCAACGACTTTTC
CGCATGTTCGTGATATGCTTCTTCCAGAGCTCCTTGCTGAATTGCACTTA
CGGCAACGGCAAAGACCTGGAGTCGAAGGAGATATTATTCTGTCTAGGAA
TAGCTTTGATTACTTCGTTCAGAGGAAGTGGGCAATGGGACCAAGACTCA
ATTCAGGCGATTATGTCCTCCTGTATGAGCATATTGGAAGCGTGTGGCAC
TGA

Coding sequence (CDS) from alignment at NODE_2154_length_6647_cov_5.294539:4927..6429-

>Gcaud2375.t1 ID=Gcaud2375.t1|Name=Gcaud2375.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_2154_length_6647_cov_5.294539:4927..6429- (Gracilaria caudata M_176_S67 male)
ATGAGCCATAGTTCTTCCATTGTACGACATTTTGGGCATCTCTTCACTCT
TTCATGCTGTCGTATCGTTCAGGAGAACGACGAGTACATGGAGAAGCCCG
ACATGTATTTGCCTTCAGTAGATTTTCTCAAACAGAGCCTTAAGAAAGAG
AAATCGGGGGATGCCTTGGTGCAAAAACTTTTGGGTCAGTATCAACTGAT
TTTCTCAAAGAAGGTTGACAAACGGAAAACGATATTGATGAATGCGGCAG
TCGTGAAGAGTGCGGGAAACATCTTAGAGGCAGAGAACTCAATAAGAGCT
GGCCTTCGGGTTGCTCCAAAGGAAACAGTTATGATGGTAATGAATCAGAA
TCTTTTCTCTCGATTAGTGTTGCAAGCATGTACTTCAGAAGACAAACGAC
TGTCACAAAGATTGTGGCATCTTTCCGCTGACGTGTTGAATCATTCTTTC
CTGTTTCCCCAGACCACAAAATACGAGGCCGAAGTGTTTCTATCCGTGGT
ATCTGGGCTTGGAAAGGAAAGCCAAGTTTGCATCGATGCCATTGAGAACA
TGATTACTACGGCCTTGGCAAATCCGTATGGTCTGTATGACCACCTGAAG
ATGATCGTGCCCCTTAAGGACGGCGCATCTCCTCCGATCTCTTTGTTTTT
CATAGCTGCGCTGCTACGTATTCGCAAGCTCAAAGAACAAAGGAAATCTT
CGCAGGGAATGTCGGAATCTGACGAGAAGCTCTTTGAGGCGTCGCTTGTT
CGTATCGTAGGATTCATTGTTGCGAGTATTATTGTTCTGGATCCTAACAC
CGAGAGAAACTTTTCGTTAATGACCTCTGTCTCCAGGTTTGTTTCAACAG
ATGCGTTCTGGTGGGACTTCAACAATGATGATGAACCGGTCGAGAGCAAA
GCACATGTTGTCAGAGCCTGTTTACATCTTAGGGAGTTGCTACATAACCG
TGGTACTTATCCAGGAACACCCTTTTTTACGCTCTTGTCCTCACTTTGTG
AATGCTTTCTACGATGTTCTTCCAATGAACACGAGGGCATCAAAACTCTT
TCTGAACTACATGGCATAGATGTTTCCTGGGACTCGTGGCGGGAGCTTAG
AAGCGGAGAACTGGCGCCGTATACTAGGTGTTGTTCCGATCTGGAAACGA
ACGCGGTACAGCGGTTCTTCCTCCATTTCTGCACCGCTAAGGGGATTTCG
GGACACACGGTTGAGGATCAGCTAAGATCCCTTAAGCGATCACTGCCCAA
GAAGGATTACGTAGTTCTTTTCAGCGCTACGCTTCGCTCAACGACTTTTC
CGCATGTTCGTGATATGCTTCTTCCAGAGCTCCTTGCTGAATTGCACTTA
CGGCAACGGCAAAGACCTGGAGTCGAAGGAGATATTATTCTGTCTAGGAA
TAGCTTTGATTACTTCGTTCAGAGGAAGTGGGCAATGGGACCAAGACTCA
ATTCAGGCGATTATGTCCTCCTGTATGAGCATATTGGAAGCGTGTGGCAC
TGA