Gcaud2374.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2374.t1
Unique NameGcaud2374.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2154_length_6647_cov_5.294539contigNODE_2154_length_6647_cov_5.294539:260..1391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog144197.XP_008295845.1
Preferred nameCPNE3
PFAMsC2,Copine
Max annot lvl33208|Metazoa
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0006464,GO:0006468,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019637,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030054,GO:0030055,GO:0030141,GO:0030334,GO:0030335,GO:0030659,GO:0030667,GO:0030971,GO:0031090,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032879,GO:0032940,GO:0035577,GO:0036211,GO:0036230,GO:0038127,GO:0038128,GO:0040012,GO:0040017,GO:0042119,GO:0042221,GO:0042582,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045055,GO:0045321,GO:0046474,GO:0046486,GO:0046903,GO:0048306,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051592,GO:0051716,GO:0065007,GO:0070013,GO:0070161,GO:0070848,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071310,GO:0071363,GO:0071704,GO:0071944,GO:0090407,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0099503,GO:0140096,GO:1901564,GO:1901576,GO:1990782,GO:2000145,GO:2000147
Evalue2.69e-13
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,38BYU@33154|Opisthokonta,3B953@33208|Metazoa,3CSWC@33213|Bilateria,48BUY@7711|Chordata,49EV4@7742|Vertebrata,4A8J0@7898|Actinopterygii
DescriptionCopine
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2374Gcaud2374Gracilaria caudata M_176_S67 malegeneNODE_2154_length_6647_cov_5.294539 260..1391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2374.t1Gcaud2374.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2154_length_6647_cov_5.294539 260..1391 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2374.t1.stop1Gcaud2374.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2154_length_6647_cov_5.294539 260..262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2374.t1.CDS1Gcaud2374.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2154_length_6647_cov_5.294539 260..403 -
Gcaud2374.t1.CDS2Gcaud2374.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2154_length_6647_cov_5.294539 468..817 -
Gcaud2374.t1.CDS3Gcaud2374.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2154_length_6647_cov_5.294539 1070..1104 -
Gcaud2374.t1.CDS4Gcaud2374.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_2154_length_6647_cov_5.294539 1264..1391 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2374.t1.exon1Gcaud2374.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2154_length_6647_cov_5.294539 260..403 -
Gcaud2374.t1.exon2Gcaud2374.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2154_length_6647_cov_5.294539 468..817 -
Gcaud2374.t1.exon3Gcaud2374.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2154_length_6647_cov_5.294539 1070..1104 -
Gcaud2374.t1.exon4Gcaud2374.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_2154_length_6647_cov_5.294539 1264..1391 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2374.t1.intron1Gcaud2374.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2154_length_6647_cov_5.294539 404..467 -
Gcaud2374.t1.intron2Gcaud2374.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2154_length_6647_cov_5.294539 818..1069 -
Gcaud2374.t1.intron3Gcaud2374.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_2154_length_6647_cov_5.294539 1105..1263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2374.t1.start1Gcaud2374.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2154_length_6647_cov_5.294539 1389..1391 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2374.t1 ID=Gcaud2374.t1|Name=Gcaud2374.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp
MSEAEKSGGSPGGMFSGRNTVHEKIQAFQAAKSPGKFTFQAGRADRVLSL
AIGIGDFLGQVKTRLFELVTKQDNNLKLADRTFKPGNYGILKITTHDDSL
STKVRVTFQFSGKKLDKKDLFGLSDPYFKIYMREKTRNSAIYRSQYIRKN
LNPVWSPDKFLLLTNGEAWCQARFTLEQLKNASSFPLVNPKKVNRPRYVN
SGELIVHRVDVVQMPTFT*
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spliced messenger RNA

>Gcaud2374.t1 ID=Gcaud2374.t1|Name=Gcaud2374.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp|location=Sequence derived from alignment at NODE_2154_length_6647_cov_5.294539:260..1391- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAGGCTGAAAAGTCGGGTGGAAGTCCCGGTGGGATGTTTAGCGG
ACGAAATACCGTACATGAGAAGATCCAGGCGTTCCAGGCGGCGAAGAGCC
CCGGAAAGTTTACTTTTCAAGCTGGTCGCGCGGATCGCGTCCTAAGCCTT
GCGATTGGCATCGGTGATTTCTTGGGTCAGGTCAAAACCCGTTTGTTCGA
GCTCGTCACCAAGCAAGACAATAACCTCAAGCTTGCCGACCGAACTTTCA
AGCCTGGAAACTATGGTATACTCAAAATTACGACCCATGACGACAGTCTA
TCCACCAAGGTGCGCGTCACCTTCCAGTTCTCTGGAAAGAAGCTCGACAA
GAAAGACCTTTTCGGACTGTCCGACCCGTACTTCAAGATTTACATGCGGG
AAAAGACGCGCAATTCTGCCATATATCGATCGCAATACATCAGGAAGAAT
CTCAATCCCGTTTGGTCGCCGGACAAGTTTTTGCTTCTCACAAACGGAGA
GGCCTGGTGTCAGGCAAGGTTCACATTGGAACAACTCAAAAATGCGTCAT
CGTTCCCGCTCGTCAACCCGAAGAAGGTCAATCGACCACGATATGTTAAT
TCAGGTGAGCTTATTGTGCATAGAGTAGATGTGGTGCAAATGCCTACGTT
TACGTAG
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protein sequence of Gcaud2374.t1

>Gcaud2374.t1 ID=Gcaud2374.t1|Name=Gcaud2374.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MSEAEKSGGSPGGMFSGRNTVHEKIQAFQAAKSPGKFTFQAGRADRVLSL
AIGIGDFLGQVKTRLFELVTKQDNNLKLADRTFKPGNYGILKITTHDDSL
STKVRVTFQFSGKKLDKKDLFGLSDPYFKIYMREKTRNSAIYRSQYIRKN
LNPVWSPDKFLLLTNGEAWCQARFTLEQLKNASSFPLVNPKKVNRPRYVN
SGELIVHRVDVVQMPTFT*
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mRNA from alignment at NODE_2154_length_6647_cov_5.294539:260..1391-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2374.t1 ID=Gcaud2374.t1|Name=Gcaud2374.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1132bp|location=Sequence derived from alignment at NODE_2154_length_6647_cov_5.294539:260..1391- (Gracilaria caudata M_176_S67 male)
ATGTCTGAGGCTGAAAAGTCGGGTGGAAGTCCCGGTGGGATGTTTAGCGG
ACGAAATACCGTACATGAGAAGATCCAGGCGTTCCAGGCGGCGAAGAGCC
CCGGAAAGTTTACTTTTCAAGCTGGTCGGTAAGTTTCCGAGCTTGCGATA
CTTCGTGTCATGAAAGCTCCATAATGTTCTTTATGAAAAGAGATATTCTA
AGGCAGACACACAAGTTGTGTGTGCATGTTCTAACTTGCGAACAACTGAC
GTTCTGGATAATGATGTCGTGTAATTGATTATGTCAGCGCGGATCGCGTC
CTAAGCCTTGCGATTGGCATCGGTATGTGCGTCATCATGTCCAACACTGC
TCGCGGCGTTCATCAACGTGGGAACAGATATGGTCGAAAGGAGGGTTTCT
AATGTTTGGGGAAACTCAGTTGCAATTAGTGAGCATGAGAAGGTCTTTAT
GGTTGTCCAGAAGGATGTAATGCATTCAATAAAGAATGTTTCATACCGAA
GGATGATGTTTCCTTCAGTATCAGCCGCTCAAGTTTGAGATCATTGATAC
CGACAACATCAAGACGGGCAAAAGGTGATTTCTTGGGTCAGGTCAAAACC
CGTTTGTTCGAGCTCGTCACCAAGCAAGACAATAACCTCAAGCTTGCCGA
CCGAACTTTCAAGCCTGGAAACTATGGTATACTCAAAATTACGACCCATG
ACGACAGTCTATCCACCAAGGTGCGCGTCACCTTCCAGTTCTCTGGAAAG
AAGCTCGACAAGAAAGACCTTTTCGGACTGTCCGACCCGTACTTCAAGAT
TTACATGCGGGAAAAGACGCGCAATTCTGCCATATATCGATCGCAATACA
TCAGGAAGAATCTCAATCCCGTTTGGTCGCCGGACAAGTTTTTGCTTCTC
ACAAACGGAGAGGCCTGGTGTCAGGTACGAACTTCTCTGCGAAATGTACG
ACTGGGACAGATACACTCCACACGATCTCATTGGGGAGGCAAGGTTCACA
TTGGAACAACTCAAAAATGCGTCATCGTTCCCGCTCGTCAACCCGAAGAA
GGTCAATCGACCACGATATGTTAATTCAGGTGAGCTTATTGTGCATAGAG
TAGATGTGGTGCAAATGCCTACGTTTACGTAG
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Coding sequence (CDS) from alignment at NODE_2154_length_6647_cov_5.294539:260..1391-

>Gcaud2374.t1 ID=Gcaud2374.t1|Name=Gcaud2374.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=657bp|location=Sequence derived from alignment at NODE_2154_length_6647_cov_5.294539:260..1391- (Gracilaria caudata M_176_S67 male)
ATGTCTGAGGCTGAAAAGTCGGGTGGAAGTCCCGGTGGGATGTTTAGCGG
ACGAAATACCGTACATGAGAAGATCCAGGCGTTCCAGGCGGCGAAGAGCC
CCGGAAAGTTTACTTTTCAAGCTGGTCGCGCGGATCGCGTCCTAAGCCTT
GCGATTGGCATCGGTGATTTCTTGGGTCAGGTCAAAACCCGTTTGTTCGA
GCTCGTCACCAAGCAAGACAATAACCTCAAGCTTGCCGACCGAACTTTCA
AGCCTGGAAACTATGGTATACTCAAAATTACGACCCATGACGACAGTCTA
TCCACCAAGGTGCGCGTCACCTTCCAGTTCTCTGGAAAGAAGCTCGACAA
GAAAGACCTTTTCGGACTGTCCGACCCGTACTTCAAGATTTACATGCGGG
AAAAGACGCGCAATTCTGCCATATATCGATCGCAATACATCAGGAAGAAT
CTCAATCCCGTTTGGTCGCCGGACAAGTTTTTGCTTCTCACAAACGGAGA
GGCCTGGTGTCAGGCAAGGTTCACATTGGAACAACTCAAAAATGCGTCAT
CGTTCCCGCTCGTCAACCCGAAGAAGGTCAATCGACCACGATATGTTAAT
TCAGGTGAGCTTATTGTGCATAGAGTAGATGTGGTGCAAATGCCTACGTT
TACGTAG
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