Gcaud2366.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2366.t1
Unique Name	Gcaud2366.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6000_length_1326_cov_4.778947	contig	NODE_6000_length_1326_cov_4.778947:78..995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2366	Gcaud2366	Gracilaria caudata M_176_S67 male	gene	NODE_6000_length_1326_cov_4.778947 78..995 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2366.t1.start1	Gcaud2366.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_6000_length_1326_cov_4.778947 78..80 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2366.t1.CDS1	Gcaud2366.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6000_length_1326_cov_4.778947 78..995 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2366.t1.exon1	Gcaud2366.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6000_length_1326_cov_4.778947 78..995 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2366.t1.stop1	Gcaud2366.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_6000_length_1326_cov_4.778947 993..995 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2366.t1	Gcaud2366.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6000_length_1326_cov_4.778947 78..995 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6000_length_1326_cov_4.778947:78..995+
coding sequence from alignment at NODE_6000_length_1326_cov_4.778947:78..995+

mRNA sequence

>Gcaud2366.t1 ID=Gcaud2366.t1|Name=Gcaud2366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=306bp
MAEVGDTTSKTVPQSTIVGLEAPLLENIDVPSIALFLKERKIYERRVAEK
NKEPGIQITPTSYKSSITDTVLEILIDGDYVDAASAENLSEDMLRKSLRK
HSQLEFKKLRLDEWERIVSDVKMKMDLSDARSRIWQLVVDYKEALRDAGY
SAVIDGCPEIAIRHLRQRTEPVELHTHMEQIISMERSTRLHKSDFRKYAK
RLAEEAQIVERARVGILPPVFEDLDGSSKPRIEVTGESREKKRAADDAGH
DDQEPVKKKRFCWNTEKCPNEEHLLKNCPRTSPEERKRIWSRIRQEAQNR
KTTAE*

spliced messenger RNA

>Gcaud2366.t1 ID=Gcaud2366.t1|Name=Gcaud2366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_6000_length_1326_cov_4.778947:78..995+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atggcagaggttggggatactacatcgaagaccgttccgcagagtactat
cgtcggacttgaagCACCATTGTTGGAGAATATTGATGTTCCCTCTATCG
CATTGTTTCTGAAGGAGCGTAAGATTTACGAACGCAGAGTGGCTGAGAAG
AATAAGGAGCCTGGTATTCAGATCACCCCAACGTCGTACAAGTCATCGAT
CACTGACACTGTGCTCGAGATTCTAATTGATGGGGACTACGTCGATGCTG
CCTCTGCAGAGAACCTTTCCGAAGATATGTTGCGAAAGAGTCTACGCAAG
CATTCGCAGTTGGAATTCAAGAAGCTTCGTCTCGATGAATGGGAAAGAAT
TGTTTCGGACGTCAAGATGAAGATGGACTTGTCTGATGCACGCAGCCGTA
TTTGGCAGTTGGTCGTCGACTACAAAGAAGCGCTTCGAGATGCGGGATAC
AGCGCTGTAATCGATGGGTGTCCGGAGATAGCGATCCGTCATCTGAGACA
ACGGACCGAGCCAGTTGAGTTGCACACGCACATGGAACAGATCATCAGCA
TGGAACGCAGCACTCGACTGCACAAGTCCGATTTTCGTAAGTATGCCAAA
CGATTGGCAGAAGAAGCGCAGATCGTCGAGAGAGCGCGTGTCGGGATATT
GCCCCCAGTTTTCGAGGACCTGGATGGATCATCAAAGCCGCGCATCGAAG
TCACAGGGGAGTCTCGCGAGAAGAAGCGAGCTGCAGACGATGCCGGACAT
GATGATCAAGAACCGGTAAAGAAGAAGCGTTTCTGTTGGAATACGGAGAA
GTGCCCAAATGAGGAGCACCTACTGAAAAACTGCCCTCGAACGTCGCCAG
AGGAGAGAAAGAGGATTTGGTCACGTATACGCCAAGAAGCTCAGAACAGA
AAGACAACAGCAGAGTAA

protein sequence of Gcaud2366.t1

>Gcaud2366.t1 ID=Gcaud2366.t1|Name=Gcaud2366.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
MAEVGDTTSKTVPQSTIVGLEAPLLENIDVPSIALFLKERKIYERRVAEK
NKEPGIQITPTSYKSSITDTVLEILIDGDYVDAASAENLSEDMLRKSLRK
HSQLEFKKLRLDEWERIVSDVKMKMDLSDARSRIWQLVVDYKEALRDAGY
SAVIDGCPEIAIRHLRQRTEPVELHTHMEQIISMERSTRLHKSDFRKYAK
RLAEEAQIVERARVGILPPVFEDLDGSSKPRIEVTGESREKKRAADDAGH
DDQEPVKKKRFCWNTEKCPNEEHLLKNCPRTSPEERKRIWSRIRQEAQNR
KTTAE*

mRNA from alignment at NODE_6000_length_1326_cov_4.778947:78..995+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2366.t1 ID=Gcaud2366.t1|Name=Gcaud2366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_6000_length_1326_cov_4.778947:78..995+ (Gracilaria caudata M_176_S67 male)
atggcagaggttggggatactacatcgaagaccgttccgcagagtactat
cgtcggacttgaagCACCATTGTTGGAGAATATTGATGTTCCCTCTATCG
CATTGTTTCTGAAGGAGCGTAAGATTTACGAACGCAGAGTGGCTGAGAAG
AATAAGGAGCCTGGTATTCAGATCACCCCAACGTCGTACAAGTCATCGAT
CACTGACACTGTGCTCGAGATTCTAATTGATGGGGACTACGTCGATGCTG
CCTCTGCAGAGAACCTTTCCGAAGATATGTTGCGAAAGAGTCTACGCAAG
CATTCGCAGTTGGAATTCAAGAAGCTTCGTCTCGATGAATGGGAAAGAAT
TGTTTCGGACGTCAAGATGAAGATGGACTTGTCTGATGCACGCAGCCGTA
TTTGGCAGTTGGTCGTCGACTACAAAGAAGCGCTTCGAGATGCGGGATAC
AGCGCTGTAATCGATGGGTGTCCGGAGATAGCGATCCGTCATCTGAGACA
ACGGACCGAGCCAGTTGAGTTGCACACGCACATGGAACAGATCATCAGCA
TGGAACGCAGCACTCGACTGCACAAGTCCGATTTTCGTAAGTATGCCAAA
CGATTGGCAGAAGAAGCGCAGATCGTCGAGAGAGCGCGTGTCGGGATATT
GCCCCCAGTTTTCGAGGACCTGGATGGATCATCAAAGCCGCGCATCGAAG
TCACAGGGGAGTCTCGCGAGAAGAAGCGAGCTGCAGACGATGCCGGACAT
GATGATCAAGAACCGGTAAAGAAGAAGCGTTTCTGTTGGAATACGGAGAA
GTGCCCAAATGAGGAGCACCTACTGAAAAACTGCCCTCGAACGTCGCCAG
AGGAGAGAAAGAGGATTTGGTCACGTATACGCCAAGAAGCTCAGAACAGA
AAGACAACAGCAGAGTAA

Coding sequence (CDS) from alignment at NODE_6000_length_1326_cov_4.778947:78..995+

>Gcaud2366.t1 ID=Gcaud2366.t1|Name=Gcaud2366.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=918bp|location=Sequence derived from alignment at NODE_6000_length_1326_cov_4.778947:78..995+ (Gracilaria caudata M_176_S67 male)
atggcagaggttggggatactacatcgaagaccgttccgcagagtactat
cgtcggacttgaagCACCATTGTTGGAGAATATTGATGTTCCCTCTATCG
CATTGTTTCTGAAGGAGCGTAAGATTTACGAACGCAGAGTGGCTGAGAAG
AATAAGGAGCCTGGTATTCAGATCACCCCAACGTCGTACAAGTCATCGAT
CACTGACACTGTGCTCGAGATTCTAATTGATGGGGACTACGTCGATGCTG
CCTCTGCAGAGAACCTTTCCGAAGATATGTTGCGAAAGAGTCTACGCAAG
CATTCGCAGTTGGAATTCAAGAAGCTTCGTCTCGATGAATGGGAAAGAAT
TGTTTCGGACGTCAAGATGAAGATGGACTTGTCTGATGCACGCAGCCGTA
TTTGGCAGTTGGTCGTCGACTACAAAGAAGCGCTTCGAGATGCGGGATAC
AGCGCTGTAATCGATGGGTGTCCGGAGATAGCGATCCGTCATCTGAGACA
ACGGACCGAGCCAGTTGAGTTGCACACGCACATGGAACAGATCATCAGCA
TGGAACGCAGCACTCGACTGCACAAGTCCGATTTTCGTAAGTATGCCAAA
CGATTGGCAGAAGAAGCGCAGATCGTCGAGAGAGCGCGTGTCGGGATATT
GCCCCCAGTTTTCGAGGACCTGGATGGATCATCAAAGCCGCGCATCGAAG
TCACAGGGGAGTCTCGCGAGAAGAAGCGAGCTGCAGACGATGCCGGACAT
GATGATCAAGAACCGGTAAAGAAGAAGCGTTTCTGTTGGAATACGGAGAA
GTGCCCAAATGAGGAGCACCTACTGAAAAACTGCCCTCGAACGTCGCCAG
AGGAGAGAAAGAGGATTTGGTCACGTATACGCCAAGAAGCTCAGAACAGA
AAGACAACAGCAGAGTAA