Gcaud2365.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2365.t1
Unique NameGcaud2365.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1784_length_8405_cov_4.763050contigNODE_1784_length_8405_cov_4.763050:6277..7541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010521873.1
PFAMsANF_receptor,Lig_chan,SBP_bac_3
Max annot lvl35493|Streptophyta
KEGG koko:K05387
KEGG TC1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
GOsGO:0001101,GO:0003674,GO:0004888,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007154,GO:0007165,GO:0008066,GO:0008150,GO:0008324,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0019722,GO:0019932,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0034220,GO:0035556,GO:0038023,GO:0042221,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046873,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0060089,GO:0065007,GO:0070588,GO:0070838,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901698,GO:1901699,GO:1901700,GO:1901701
Evalue0.000138
EggNOG OGsKOG1052@1|root,KOG1052@2759|Eukaryota,37K5G@33090|Viridiplantae,3GEFA@35493|Streptophyta,3HQ0F@3699|Brassicales
DescriptionGlutamate-gated receptor that probably acts as non- selective cation channel
COG categoryEPT
BRITEko00000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2365Gcaud2365Gracilaria caudata M_176_S67 malegeneNODE_1784_length_8405_cov_4.763050 6277..7541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2365.t1Gcaud2365.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1784_length_8405_cov_4.763050 6277..7541 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2365.t1.stop1Gcaud2365.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1784_length_8405_cov_4.763050 6277..6279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2365.t1.CDS1Gcaud2365.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1784_length_8405_cov_4.763050 6277..6742 -
Gcaud2365.t1.CDS2Gcaud2365.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1784_length_8405_cov_4.763050 6837..6879 -
Gcaud2365.t1.CDS3Gcaud2365.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1784_length_8405_cov_4.763050 6985..7098 -
Gcaud2365.t1.CDS4Gcaud2365.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1784_length_8405_cov_4.763050 7193..7541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2365.t1.exon1Gcaud2365.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1784_length_8405_cov_4.763050 6277..6742 -
Gcaud2365.t1.exon2Gcaud2365.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1784_length_8405_cov_4.763050 6837..6879 -
Gcaud2365.t1.exon3Gcaud2365.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1784_length_8405_cov_4.763050 6985..7098 -
Gcaud2365.t1.exon4Gcaud2365.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1784_length_8405_cov_4.763050 7193..7541 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2365.t1.intron1Gcaud2365.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1784_length_8405_cov_4.763050 6743..6836 -
Gcaud2365.t1.intron2Gcaud2365.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1784_length_8405_cov_4.763050 6880..6984 -
Gcaud2365.t1.intron3Gcaud2365.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1784_length_8405_cov_4.763050 7099..7192 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2365.t1.start1Gcaud2365.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1784_length_8405_cov_4.763050 7539..7541 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2365.t1 ID=Gcaud2365.t1|Name=Gcaud2365.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
MCDIGVGGWFQTPSRFHQVDFLPPFTTDSYRVFADFSNTVIDLQPHFFLT
SFSTNAWILIAVQIVTFAVLRLMDSRFAPAPSYHPLPNTQPFFIRFWYGL
INHPLSYRIRRSIRITLSRMILSPDVDDIRNAAQWFIDLLQALCSLFLLM
VYSASGTFELFWRKVIAANERDCHRNDSPTFLRTYEEVFSHVSQKKCLYG
LHLESTAKDAIHNRYCGRFTLIGDELYTGGLSMILPKHSPMTKHMTEATL
ALQDIADSPRMTKYFMNRRNCEANLATTVGAKKLELFFSLSFLLLGLIWI
VLVFKLLRSFMKRRRMAADNDVV*
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spliced messenger RNA

>Gcaud2365.t1 ID=Gcaud2365.t1|Name=Gcaud2365.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_1784_length_8405_cov_4.763050:6277..7541- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGACATTGGTGTGGGGGGTTGGTTTCAGACGCCGTCGCGATTTCA
TCAGGTTGATTTTCTGCCGCCCTTCACCACGGATAGCTATCGCGTGTTTG
CCGACTTTTCGAATACCGTCATTGATCTGCAGCCCCATTTCTTCCTCACC
TCCTTCAGCACCAATGCATGGATACTCATTGCCGTCCAGATTGTTACGTT
TGCCGTTTTGAGACTTATGGATTCCCGTTTCGCGCCTGCTCCTTCGTATC
ACCCTTTGCCCAACACTCAGCCTTTCTTCATACGCTTTTGGTATGGCCTC
ATCAATCATCCACTTTCATATCGCATCCGTCGTTCCATTCGCATAACGTT
GAGCCGCATGATTCTTTCTCCGGACGTGGACGACATTAGAAATGCCGCGC
AGTGGTTCATTGACTTACTGCAAGCGCTGTGCAGCCTGTTTCTTTTAATG
GTATACAGCGCCAGCGGTACGTTCGAGTTGTTTTGGCGCAAAGTAATCGC
TGCAAACGAGAGAGACTGTCATCGTAATGATTCGCCAACGTTTCTGCGCA
CTTATGAGGAAGTGTTTTCACATGTTTCGCAGAAAAAGTGTCTATACGGT
CTTCATCTAGAATCAACGGCCAAAGATGCCATTCACAATCGATACTGTGG
ACGATTTACACTCATTGGTGATGAGTTATATACGGGAGGATTGTCCATGA
TACTTCCGAAACACTCCCCGATGACCAAGCATATGACTGAGGCAACTCTT
GCATTACAAGACATTGCAGACAGTCCAAGAATGACCAAATACTTTATGAA
TCGTCGCAATTGCGAAGCCAATTTGGCTACCACTGTCGGCGCTAAGAAGC
TGGAGCTGTTCTTCTCTCTTTCTTTTCTACTTTTGGGTTTAATTTGGATT
GTGCTGGTGTTCAAGCTCTTGCGAAGTTTCATGAAGAGAAGAAGAATGGC
TGCTGATAATGACGTTGTGTAG
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protein sequence of Gcaud2365.t1

>Gcaud2365.t1 ID=Gcaud2365.t1|Name=Gcaud2365.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MCDIGVGGWFQTPSRFHQVDFLPPFTTDSYRVFADFSNTVIDLQPHFFLT
SFSTNAWILIAVQIVTFAVLRLMDSRFAPAPSYHPLPNTQPFFIRFWYGL
INHPLSYRIRRSIRITLSRMILSPDVDDIRNAAQWFIDLLQALCSLFLLM
VYSASGTFELFWRKVIAANERDCHRNDSPTFLRTYEEVFSHVSQKKCLYG
LHLESTAKDAIHNRYCGRFTLIGDELYTGGLSMILPKHSPMTKHMTEATL
ALQDIADSPRMTKYFMNRRNCEANLATTVGAKKLELFFSLSFLLLGLIWI
VLVFKLLRSFMKRRRMAADNDVV*
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mRNA from alignment at NODE_1784_length_8405_cov_4.763050:6277..7541-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2365.t1 ID=Gcaud2365.t1|Name=Gcaud2365.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1265bp|location=Sequence derived from alignment at NODE_1784_length_8405_cov_4.763050:6277..7541- (Gracilaria caudata M_176_S67 male)
ATGTGCGACATTGGTGTGGGGGGTTGGTTTCAGACGCCGTCGCGATTTCA
TCAGGTTGATTTTCTGCCGCCCTTCACCACGGATAGCTATCGCGTGTTTG
CCGACTTTTCGAATACCGTCATTGATCTGCAGCCCCATTTCTTCCTCACC
TCCTTCAGCACCAATGCATGGATACTCATTGCCGTCCAGATTGTTACGTT
TGCCGTTTTGAGACTTATGGATTCCCGTTTCGCGCCTGCTCCTTCGTATC
ACCCTTTGCCCAACACTCAGCCTTTCTTCATACGCTTTTGGTATGGCCTC
ATCAATCATCCACTTTCATATCGCATCCGTCGTTCCATTCGCATAACGTG
TAAGTTGTTACGCTACCAACCCCCCTTGAAATCAATCACACATCTGAGCT
TTTTCTTCTGCTTAATACTGCGTGCACCCTTTGTGTCAAACAGTGAGCCG
CATGATTCTTTCTCCGGACGTGGACGACATTAGAAATGCCGCGCAGTGGT
TCATTGACTTACTGCAAGCGCTGTGCAGCCTGTTTCTTTTAATGGTATAC
AGCGCCAGTATGACTGCGTCACTGGTGCAGCATTCCTTCTCTGCCAAGTT
TCGAGACGCCGCTGACTTTAAGTCATGTCGAATCAAACCATCTGATGTAT
GCACACTCAAAGGCGGTACGTTCGAGTTGTTTTGGCGCAAAGTAATCGCT
GCAAAGTACGTTACATTTGTTCTTTTTTCGCATACCATTGTTTTGTAGCT
TCGAGCATTCTAATGTCCGTCACGTACACTCCACTTTAATGCGTACAAGC
GAGAGAGACTGTCATCGTAATGATTCGCCAACGTTTCTGCGCACTTATGA
GGAAGTGTTTTCACATGTTTCGCAGAAAAAGTGTCTATACGGTCTTCATC
TAGAATCAACGGCCAAAGATGCCATTCACAATCGATACTGTGGACGATTT
ACACTCATTGGTGATGAGTTATATACGGGAGGATTGTCCATGATACTTCC
GAAACACTCCCCGATGACCAAGCATATGACTGAGGCAACTCTTGCATTAC
AAGACATTGCAGACAGTCCAAGAATGACCAAATACTTTATGAATCGTCGC
AATTGCGAAGCCAATTTGGCTACCACTGTCGGCGCTAAGAAGCTGGAGCT
GTTCTTCTCTCTTTCTTTTCTACTTTTGGGTTTAATTTGGATTGTGCTGG
TGTTCAAGCTCTTGCGAAGTTTCATGAAGAGAAGAAGAATGGCTGCTGAT
AATGACGTTGTGTAG
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Coding sequence (CDS) from alignment at NODE_1784_length_8405_cov_4.763050:6277..7541-

>Gcaud2365.t1 ID=Gcaud2365.t1|Name=Gcaud2365.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_1784_length_8405_cov_4.763050:6277..7541- (Gracilaria caudata M_176_S67 male)
ATGTGCGACATTGGTGTGGGGGGTTGGTTTCAGACGCCGTCGCGATTTCA
TCAGGTTGATTTTCTGCCGCCCTTCACCACGGATAGCTATCGCGTGTTTG
CCGACTTTTCGAATACCGTCATTGATCTGCAGCCCCATTTCTTCCTCACC
TCCTTCAGCACCAATGCATGGATACTCATTGCCGTCCAGATTGTTACGTT
TGCCGTTTTGAGACTTATGGATTCCCGTTTCGCGCCTGCTCCTTCGTATC
ACCCTTTGCCCAACACTCAGCCTTTCTTCATACGCTTTTGGTATGGCCTC
ATCAATCATCCACTTTCATATCGCATCCGTCGTTCCATTCGCATAACGTT
GAGCCGCATGATTCTTTCTCCGGACGTGGACGACATTAGAAATGCCGCGC
AGTGGTTCATTGACTTACTGCAAGCGCTGTGCAGCCTGTTTCTTTTAATG
GTATACAGCGCCAGCGGTACGTTCGAGTTGTTTTGGCGCAAAGTAATCGC
TGCAAACGAGAGAGACTGTCATCGTAATGATTCGCCAACGTTTCTGCGCA
CTTATGAGGAAGTGTTTTCACATGTTTCGCAGAAAAAGTGTCTATACGGT
CTTCATCTAGAATCAACGGCCAAAGATGCCATTCACAATCGATACTGTGG
ACGATTTACACTCATTGGTGATGAGTTATATACGGGAGGATTGTCCATGA
TACTTCCGAAACACTCCCCGATGACCAAGCATATGACTGAGGCAACTCTT
GCATTACAAGACATTGCAGACAGTCCAAGAATGACCAAATACTTTATGAA
TCGTCGCAATTGCGAAGCCAATTTGGCTACCACTGTCGGCGCTAAGAAGC
TGGAGCTGTTCTTCTCTCTTTCTTTTCTACTTTTGGGTTTAATTTGGATT
GTGCTGGTGTTCAAGCTCTTGCGAAGTTTCATGAAGAGAAGAAGAATGGC
TGCTGATAATGACGTTGTGTAG
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