Gcaud2361.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2361.t1
Unique Name	Gcaud2361.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:61927..62415 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3649.evm.model.supercontig_13.235
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0019216,GO:0019222,GO:0019747,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045828,GO:0045834,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0065007,GO:0065008,GO:0080090,GO:1904143
Evalue	7.67e-10
EggNOG OGs	28NS1@1\|root,2QVC3@2759\|Eukaryota,37KMB@33090\|Viridiplantae,3G77B@35493\|Streptophyta,3HTE1@3699\|Brassicales
Description	Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2361	Gcaud2361	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 61927..62415 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2361.t1	Gcaud2361.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 61927..62415 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2361.t1.start1	Gcaud2361.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 61927..61929 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2361.t1.CDS1	Gcaud2361.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 61927..62238 +
Gcaud2361.t1.CDS2	Gcaud2361.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 62305..62415 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2361.t1.exon1	Gcaud2361.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 61927..62238 +
Gcaud2361.t1.exon2	Gcaud2361.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 62305..62415 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2361.t1.intron1	Gcaud2361.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_48_length_65905_cov_4.503282 62239..62304 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2361.t1.stop1	Gcaud2361.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 62413..62415 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:61927..62415+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:61927..62415+

mRNA sequence

>Gcaud2361.t1 ID=Gcaud2361.t1|Name=Gcaud2361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=141bp
MDPSSVGTGYALLETFKGVVIGPTVNEITAAFAGGTVGVMGTIIALEVRR
HKIKERKQCPYCRGSGKLPCANCYTVGSLPSAASVASQKTCSTCSEKGFL
QCNHCDGDGRLIPWAYERAIRAQYEDYVYTSIDDYFLDGP*

spliced messenger RNA

>Gcaud2361.t1 ID=Gcaud2361.t1|Name=Gcaud2361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:61927..62415+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCCAGTTCGGTCGGAACTGGTTACGCCTTATTGGAAACCTTCAA
AGGCGTCGTCATCGGACCCACTGTCAATGAGATTACCGCCGCCTTTGCGG
GTGGAACCGTCGGTGTTATGGGTACAATCATCGCGTTAGAAGTGAGACGT
CACAAAATCAAAGAGAGAAAGCAATGTCCCTATTGCAGAGGAAGTGGCAA
GCTTCCGTGTGCCAATTGCTACACCGTCGGTTCGTTGCCATCAGCAGCTT
CTGTTGCATCACAGAAAACATGTTCCACATGCAGTGAAAAGGGCTTTCTT
CAGTGCAATCACTGTGATGGAGATGGACGCCTAATTCCATGGGCTTATGA
GCGCGCTATTCGTGCTCAGTACGAAGACTACGTGTACACATCTATCGACG
ACTACTTTCTGGACGGTCCTTGA

protein sequence of Gcaud2361.t1

>Gcaud2361.t1 ID=Gcaud2361.t1|Name=Gcaud2361.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=141bp
MDPSSVGTGYALLETFKGVVIGPTVNEITAAFAGGTVGVMGTIIALEVRR
HKIKERKQCPYCRGSGKLPCANCYTVGSLPSAASVASQKTCSTCSEKGFL
QCNHCDGDGRLIPWAYERAIRAQYEDYVYTSIDDYFLDGP*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:61927..62415+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2361.t1 ID=Gcaud2361.t1|Name=Gcaud2361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:61927..62415+ (Gracilaria caudata M_176_S67 male)
ATGGATCCCAGTTCGGTCGGAACTGGTTACGCCTTATTGGAAACCTTCAA
AGGCGTCGTCATCGGACCCACTGTCAATGAGATTACCGCCGCCTTTGCGG
GTGGAACCGTCGGTGTTATGGGTACAATCATCGCGTTAGAAGTGAGACGT
CACAAAATCAAAGAGAGAAAGCAATGTCCCTATTGCAGAGGAAGTGGCAA
GCTTCCGTGTGCCAATTGCTACACCGTCGGTTCGTTGCCATCAGCAGCTT
CTGTTGCATCACAGAAAACATGTTCCACATGCAGTGAAAAGGGCTTTCTT
CAGTGCAATCACGTAAGTGTTCACCTCCTATCAGCCTTGCTTCCCGACGT
GTTTGACTGACCTGATTGTTTGCCACAGTGTGATGGAGATGGACGCCTAA
TTCCATGGGCTTATGAGCGCGCTATTCGTGCTCAGTACGAAGACTACGTG
TACACATCTATCGACGACTACTTTCTGGACGGTCCTTGA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:61927..62415+

>Gcaud2361.t1 ID=Gcaud2361.t1|Name=Gcaud2361.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=423bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:61927..62415+ (Gracilaria caudata M_176_S67 male)
ATGGATCCCAGTTCGGTCGGAACTGGTTACGCCTTATTGGAAACCTTCAA
AGGCGTCGTCATCGGACCCACTGTCAATGAGATTACCGCCGCCTTTGCGG
GTGGAACCGTCGGTGTTATGGGTACAATCATCGCGTTAGAAGTGAGACGT
CACAAAATCAAAGAGAGAAAGCAATGTCCCTATTGCAGAGGAAGTGGCAA
GCTTCCGTGTGCCAATTGCTACACCGTCGGTTCGTTGCCATCAGCAGCTT
CTGTTGCATCACAGAAAACATGTTCCACATGCAGTGAAAAGGGCTTTCTT
CAGTGCAATCACTGTGATGGAGATGGACGCCTAATTCCATGGGCTTATGA
GCGCGCTATTCGTGCTCAGTACGAAGACTACGTGTACACATCTATCGACG
ACTACTTTCTGGACGGTCCTTGA