Gcaud2359.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2359.t1
Unique Name	Gcaud2359.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:58178..59014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708712.1
PFAMs	GST_C,GST_C_2,GST_N_3
Max annot lvl	2759\|Eukaryota
Evalue	4.34e-44
EggNOG OGs	KOG0406@1\|root,KOG0406@2759\|Eukaryota
Description	glutathione transferase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2359	Gcaud2359	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 58178..59014 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2359.t1.stop1	Gcaud2359.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 58178..58180 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2359.t1.CDS1	Gcaud2359.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 58178..59014 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2359.t1.exon1	Gcaud2359.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 58178..59014 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2359.t1.start1	Gcaud2359.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 59012..59014 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2359.t1	Gcaud2359.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 58178..59014 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:58178..59014-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:58178..59014-

mRNA sequence

>Gcaud2359.t1 ID=Gcaud2359.t1|Name=Gcaud2359.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=279bp
MHTFVALPFSGLRKQKSPNRLRIGYTEMQAVTTSPKVQITLYGSEVSNYT
ARCRYLIRRKNLPDKMVSLRSPKALGGLKTEPYLELNPLGKMPLLVISKP
GRDDEALFESSIICEYLAEEFADLQPSFTPESPEARAKARLIANLLDIYV
GPHHPYMYKKLEGDRVAGAQKMIQGFDAIEHVLDTSGPYAAGKILSIADC
CLLGNFPFYDYMLPTFFGWKPTDGRPKLKAWREHMINESPAARETYSEVF
NALHVWWDNDRWVKLGMEALTTRPSLPF*

spliced messenger RNA

>Gcaud2359.t1 ID=Gcaud2359.t1|Name=Gcaud2359.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:58178..59014- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACGTTTGTAGCTTTACCATTTTCTGGACTGAGAAAGCAAAAATC
TCCTAACCGCTTGCGTATTGGGTACACAGAGATGCAGGCTGTCACAACAT
CACCCAAAGTGCAGATCACCTTGTACGGGTCAGAAGTTTCAAATTATACA
GCTCGATGCAGATATCTTATCAGAAGGAAAAACTTACCAGACAAGATGGT
CTCCCTCCGATCGCCAAAGGCTCTTGGTGGTCTAAAGACTGAACCGTATC
TTGAACTAAATCCTTTAGGGAAAATGCCTTTGCTGGTCATCAGCAAGCCA
GGTCGTGACGATGAGGCTCTTTTTGAGAGTTCTATCATTTGCGAGTATCT
TGCAGAAGAATTTGCAGATCTGCAACCAAGCTTCACACCCGAATCCCCGG
AAGCTCGTGCAAAGGCAAGGCTCATTGCAAATTTGTTAGACATTTACGTT
GGACCACACCATCCATATATGTACAAAAAGCTGGAAGGGGATCGCGTGGC
GGGTGCGCAAAAAATGATTCAAGGTTTTGACGCTATCGAGCACGTCCTCG
ATACCAGCGGGCCATATGCTGCGGGCAAAATCCTTTCAATAGCAGATTGC
TGTCTGCTGGGTAATTTTCCATTCTACGACTATATGCTTCCCACCTTCTT
TGGCTGGAAACCCACTGACGGCCGTCCAAAACTTAAAGCTTGGAGGGAGC
ACATGATTAATGAATCACCAGCCGCAAGGGAGACCTACTCCGAAGTTTTC
AATGCCCTTCACGTGTGGTGGGATAATGATCGATGGGTGAAGCTTGGTAT
GGAAGCACTTACCACGCGCCCTTCTCTTCCTTTCTGA

protein sequence of Gcaud2359.t1

>Gcaud2359.t1 ID=Gcaud2359.t1|Name=Gcaud2359.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=279bp
MHTFVALPFSGLRKQKSPNRLRIGYTEMQAVTTSPKVQITLYGSEVSNYT
ARCRYLIRRKNLPDKMVSLRSPKALGGLKTEPYLELNPLGKMPLLVISKP
GRDDEALFESSIICEYLAEEFADLQPSFTPESPEARAKARLIANLLDIYV
GPHHPYMYKKLEGDRVAGAQKMIQGFDAIEHVLDTSGPYAAGKILSIADC
CLLGNFPFYDYMLPTFFGWKPTDGRPKLKAWREHMINESPAARETYSEVF
NALHVWWDNDRWVKLGMEALTTRPSLPF*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:58178..59014-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2359.t1 ID=Gcaud2359.t1|Name=Gcaud2359.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:58178..59014- (Gracilaria caudata M_176_S67 male)
ATGCACACGTTTGTAGCTTTACCATTTTCTGGACTGAGAAAGCAAAAATC
TCCTAACCGCTTGCGTATTGGGTACACAGAGATGCAGGCTGTCACAACAT
CACCCAAAGTGCAGATCACCTTGTACGGGTCAGAAGTTTCAAATTATACA
GCTCGATGCAGATATCTTATCAGAAGGAAAAACTTACCAGACAAGATGGT
CTCCCTCCGATCGCCAAAGGCTCTTGGTGGTCTAAAGACTGAACCGTATC
TTGAACTAAATCCTTTAGGGAAAATGCCTTTGCTGGTCATCAGCAAGCCA
GGTCGTGACGATGAGGCTCTTTTTGAGAGTTCTATCATTTGCGAGTATCT
TGCAGAAGAATTTGCAGATCTGCAACCAAGCTTCACACCCGAATCCCCGG
AAGCTCGTGCAAAGGCAAGGCTCATTGCAAATTTGTTAGACATTTACGTT
GGACCACACCATCCATATATGTACAAAAAGCTGGAAGGGGATCGCGTGGC
GGGTGCGCAAAAAATGATTCAAGGTTTTGACGCTATCGAGCACGTCCTCG
ATACCAGCGGGCCATATGCTGCGGGCAAAATCCTTTCAATAGCAGATTGC
TGTCTGCTGGGTAATTTTCCATTCTACGACTATATGCTTCCCACCTTCTT
TGGCTGGAAACCCACTGACGGCCGTCCAAAACTTAAAGCTTGGAGGGAGC
ACATGATTAATGAATCACCAGCCGCAAGGGAGACCTACTCCGAAGTTTTC
AATGCCCTTCACGTGTGGTGGGATAATGATCGATGGGTGAAGCTTGGTAT
GGAAGCACTTACCACGCGCCCTTCTCTTCCTTTCTGA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:58178..59014-

>Gcaud2359.t1 ID=Gcaud2359.t1|Name=Gcaud2359.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=837bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:58178..59014- (Gracilaria caudata M_176_S67 male)
ATGCACACGTTTGTAGCTTTACCATTTTCTGGACTGAGAAAGCAAAAATC
TCCTAACCGCTTGCGTATTGGGTACACAGAGATGCAGGCTGTCACAACAT
CACCCAAAGTGCAGATCACCTTGTACGGGTCAGAAGTTTCAAATTATACA
GCTCGATGCAGATATCTTATCAGAAGGAAAAACTTACCAGACAAGATGGT
CTCCCTCCGATCGCCAAAGGCTCTTGGTGGTCTAAAGACTGAACCGTATC
TTGAACTAAATCCTTTAGGGAAAATGCCTTTGCTGGTCATCAGCAAGCCA
GGTCGTGACGATGAGGCTCTTTTTGAGAGTTCTATCATTTGCGAGTATCT
TGCAGAAGAATTTGCAGATCTGCAACCAAGCTTCACACCCGAATCCCCGG
AAGCTCGTGCAAAGGCAAGGCTCATTGCAAATTTGTTAGACATTTACGTT
GGACCACACCATCCATATATGTACAAAAAGCTGGAAGGGGATCGCGTGGC
GGGTGCGCAAAAAATGATTCAAGGTTTTGACGCTATCGAGCACGTCCTCG
ATACCAGCGGGCCATATGCTGCGGGCAAAATCCTTTCAATAGCAGATTGC
TGTCTGCTGGGTAATTTTCCATTCTACGACTATATGCTTCCCACCTTCTT
TGGCTGGAAACCCACTGACGGCCGTCCAAAACTTAAAGCTTGGAGGGAGC
ACATGATTAATGAATCACCAGCCGCAAGGGAGACCTACTCCGAAGTTTTC
AATGCCCTTCACGTGTGGTGGGATAATGATCGATGGGTGAAGCTTGGTAT
GGAAGCACTTACCACGCGCCCTTCTCTTCCTTTCTGA