Gcaud2358.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2358.t1
Unique Name	Gcaud2358.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:56886..58160 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX39002
PFAMs	His_Phos_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K22200
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
Evalue	1.1e-29
EggNOG OGs	COG0588@1\|root,KOG0235@2759\|Eukaryota
EC	3.1.3.63
Description	regulation of pentose-phosphate shunt
COG category	G
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2358	Gcaud2358	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 56886..58160 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2358.t1.start1	Gcaud2358.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 56886..56888 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2358.t1.CDS1	Gcaud2358.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 56886..58160 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2358.t1.exon1	Gcaud2358.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 56886..58160 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2358.t1.stop1	Gcaud2358.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 58158..58160 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2358.t1	Gcaud2358.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 56886..58160 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:56886..58160+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:56886..58160+

mRNA sequence

>Gcaud2358.t1 ID=Gcaud2358.t1|Name=Gcaud2358.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=425bp
MRAVGFHSFPVFTNLKCSQSDSYNTPGTKEARRPSVSPPSGSQKFVILMR
HGMTDWNQDGRIQGSLDRSRLNSTGVKQARHAGRFLSGIPFDSILCSPLH
RARQTLELAASVSQNPRLQRLRPELLEDLKEIQVPWQGTLRSEVPNGDFR
DSYLKYKRNPYSFSYFGFSPMDDLIRRAQHAWEIVTRSSGNFHLIVAHNQ
MNKALICTALGMQTCLRSWNQGNCCFNLFVLQTDKPPILRLCNGSGLGNL
RYAPRRAQLRSKWTRVYLYHAGSVRGLRQEVRKLSITRLFCINHEPHEMD
FDALGKKYLQKKSTSIYLNGEDHSLIYRECRKCLDMIRMNYVGQHVIVRI
TTSWLKSLFFTAALGLEPHESHRFHTDPGGVSIIDLSSESGLGVENIRVD
SFNAHANSSNGPLLGYTFAIGAHN*

spliced messenger RNA

>Gcaud2358.t1 ID=Gcaud2358.t1|Name=Gcaud2358.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:56886..58160+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCTGTGGGATTCCATTCGTTTCCTGTTTTCACGAATTTAAAATG
CAGCCAGTCCGATTCTTATAACACTCCCGGAACGAAAGAAGCGAGACGAC
CCTCAGTGTCACCTCCAAGTGGAAGTCAGAAGTTCGTCATTCTAATGCGT
CATGGTATGACTGATTGGAATCAAGATGGTCGCATTCAAGGAAGCCTCGA
CAGATCAAGGCTGAACAGCACAGGCGTGAAACAAGCCAGACATGCGGGAA
GGTTCCTTAGCGGGATTCCCTTTGACAGTATTCTATGTTCGCCTCTCCAC
CGCGCTCGACAGACTCTCGAACTTGCTGCGTCCGTGTCACAAAACCCCCG
ATTACAAAGACTGCGACCGGAACTGTTAGAGGATTTGAAAGAGATTCAAG
TTCCATGGCAAGGCACACTGCGAAGCGAAGTACCGAACGGAGATTTTCGC
GATTCGTATCTGAAATACAAACGCAATCCTTATTCGTTTTCTTACTTCGG
TTTTAGTCCGATGGACGACCTCATCAGAAGGGCTCAACATGCATGGGAAA
TAGTCACGCGCAGTAGTGGAAACTTTCATCTCATAGTGGCTCACAATCAA
ATGAACAAGGCTTTAATCTGCACCGCGCTGGGTATGCAAACGTGTTTAAG
ATCTTGGAACCAGGGTAACTGTTGTTTTAACTTGTTCGTGTTGCAAACAG
ATAAACCCCCGATTCTGAGGTTATGCAACGGAAGTGGTTTAGGAAATTTG
CGCTATGCTCCAAGACGAGCGCAACTACGATCGAAATGGACTAGAGTTTA
TCTCTACCACGCCGGAAGTGTAAGAGGCTTGCGTCAGGAAGTGCGCAAGC
TATCTATCACAAGGCTGTTTTGCATTAATCACGAACCACATGAGATGGAC
TTCGATGCTTTGGGTAAGAAGTATTTGCAAAAGAAGTCGACCTCAATTTA
CTTGAACGGTGAAGACCATAGCTTGATATACCGAGAATGCCGCAAGTGTT
TGGATATGATTCGCATGAATTACGTTGGTCAGCACGTTATCGTTCGAATA
ACGACGTCATGGCTAAAGTCCCTCTTTTTTACGGCAGCACTGGGTCTAGA
ACCACATGAAAGCCATCGATTTCATACGGATCCAGGAGGAGTCAGCATTA
TCGACCTTAGCTCGGAATCTGGTCTTGGGGTCGAGAATATCCGTGTCGAC
AGTTTTAACGCCCACGCTAATTCATCAAATGGACCTCTTCTTGGCTACAC
TTTTGCAATAGGGGCGCACAACTAG

protein sequence of Gcaud2358.t1

>Gcaud2358.t1 ID=Gcaud2358.t1|Name=Gcaud2358.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=425bp
MRAVGFHSFPVFTNLKCSQSDSYNTPGTKEARRPSVSPPSGSQKFVILMR
HGMTDWNQDGRIQGSLDRSRLNSTGVKQARHAGRFLSGIPFDSILCSPLH
RARQTLELAASVSQNPRLQRLRPELLEDLKEIQVPWQGTLRSEVPNGDFR
DSYLKYKRNPYSFSYFGFSPMDDLIRRAQHAWEIVTRSSGNFHLIVAHNQ
MNKALICTALGMQTCLRSWNQGNCCFNLFVLQTDKPPILRLCNGSGLGNL
RYAPRRAQLRSKWTRVYLYHAGSVRGLRQEVRKLSITRLFCINHEPHEMD
FDALGKKYLQKKSTSIYLNGEDHSLIYRECRKCLDMIRMNYVGQHVIVRI
TTSWLKSLFFTAALGLEPHESHRFHTDPGGVSIIDLSSESGLGVENIRVD
SFNAHANSSNGPLLGYTFAIGAHN*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:56886..58160+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2358.t1 ID=Gcaud2358.t1|Name=Gcaud2358.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:56886..58160+ (Gracilaria caudata M_176_S67 male)
ATGAGAGCTGTGGGATTCCATTCGTTTCCTGTTTTCACGAATTTAAAATG
CAGCCAGTCCGATTCTTATAACACTCCCGGAACGAAAGAAGCGAGACGAC
CCTCAGTGTCACCTCCAAGTGGAAGTCAGAAGTTCGTCATTCTAATGCGT
CATGGTATGACTGATTGGAATCAAGATGGTCGCATTCAAGGAAGCCTCGA
CAGATCAAGGCTGAACAGCACAGGCGTGAAACAAGCCAGACATGCGGGAA
GGTTCCTTAGCGGGATTCCCTTTGACAGTATTCTATGTTCGCCTCTCCAC
CGCGCTCGACAGACTCTCGAACTTGCTGCGTCCGTGTCACAAAACCCCCG
ATTACAAAGACTGCGACCGGAACTGTTAGAGGATTTGAAAGAGATTCAAG
TTCCATGGCAAGGCACACTGCGAAGCGAAGTACCGAACGGAGATTTTCGC
GATTCGTATCTGAAATACAAACGCAATCCTTATTCGTTTTCTTACTTCGG
TTTTAGTCCGATGGACGACCTCATCAGAAGGGCTCAACATGCATGGGAAA
TAGTCACGCGCAGTAGTGGAAACTTTCATCTCATAGTGGCTCACAATCAA
ATGAACAAGGCTTTAATCTGCACCGCGCTGGGTATGCAAACGTGTTTAAG
ATCTTGGAACCAGGGTAACTGTTGTTTTAACTTGTTCGTGTTGCAAACAG
ATAAACCCCCGATTCTGAGGTTATGCAACGGAAGTGGTTTAGGAAATTTG
CGCTATGCTCCAAGACGAGCGCAACTACGATCGAAATGGACTAGAGTTTA
TCTCTACCACGCCGGAAGTGTAAGAGGCTTGCGTCAGGAAGTGCGCAAGC
TATCTATCACAAGGCTGTTTTGCATTAATCACGAACCACATGAGATGGAC
TTCGATGCTTTGGGTAAGAAGTATTTGCAAAAGAAGTCGACCTCAATTTA
CTTGAACGGTGAAGACCATAGCTTGATATACCGAGAATGCCGCAAGTGTT
TGGATATGATTCGCATGAATTACGTTGGTCAGCACGTTATCGTTCGAATA
ACGACGTCATGGCTAAAGTCCCTCTTTTTTACGGCAGCACTGGGTCTAGA
ACCACATGAAAGCCATCGATTTCATACGGATCCAGGAGGAGTCAGCATTA
TCGACCTTAGCTCGGAATCTGGTCTTGGGGTCGAGAATATCCGTGTCGAC
AGTTTTAACGCCCACGCTAATTCATCAAATGGACCTCTTCTTGGCTACAC
TTTTGCAATAGGGGCGCACAACTAG

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:56886..58160+

>Gcaud2358.t1 ID=Gcaud2358.t1|Name=Gcaud2358.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1275bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:56886..58160+ (Gracilaria caudata M_176_S67 male)
ATGAGAGCTGTGGGATTCCATTCGTTTCCTGTTTTCACGAATTTAAAATG
CAGCCAGTCCGATTCTTATAACACTCCCGGAACGAAAGAAGCGAGACGAC
CCTCAGTGTCACCTCCAAGTGGAAGTCAGAAGTTCGTCATTCTAATGCGT
CATGGTATGACTGATTGGAATCAAGATGGTCGCATTCAAGGAAGCCTCGA
CAGATCAAGGCTGAACAGCACAGGCGTGAAACAAGCCAGACATGCGGGAA
GGTTCCTTAGCGGGATTCCCTTTGACAGTATTCTATGTTCGCCTCTCCAC
CGCGCTCGACAGACTCTCGAACTTGCTGCGTCCGTGTCACAAAACCCCCG
ATTACAAAGACTGCGACCGGAACTGTTAGAGGATTTGAAAGAGATTCAAG
TTCCATGGCAAGGCACACTGCGAAGCGAAGTACCGAACGGAGATTTTCGC
GATTCGTATCTGAAATACAAACGCAATCCTTATTCGTTTTCTTACTTCGG
TTTTAGTCCGATGGACGACCTCATCAGAAGGGCTCAACATGCATGGGAAA
TAGTCACGCGCAGTAGTGGAAACTTTCATCTCATAGTGGCTCACAATCAA
ATGAACAAGGCTTTAATCTGCACCGCGCTGGGTATGCAAACGTGTTTAAG
ATCTTGGAACCAGGGTAACTGTTGTTTTAACTTGTTCGTGTTGCAAACAG
ATAAACCCCCGATTCTGAGGTTATGCAACGGAAGTGGTTTAGGAAATTTG
CGCTATGCTCCAAGACGAGCGCAACTACGATCGAAATGGACTAGAGTTTA
TCTCTACCACGCCGGAAGTGTAAGAGGCTTGCGTCAGGAAGTGCGCAAGC
TATCTATCACAAGGCTGTTTTGCATTAATCACGAACCACATGAGATGGAC
TTCGATGCTTTGGGTAAGAAGTATTTGCAAAAGAAGTCGACCTCAATTTA
CTTGAACGGTGAAGACCATAGCTTGATATACCGAGAATGCCGCAAGTGTT
TGGATATGATTCGCATGAATTACGTTGGTCAGCACGTTATCGTTCGAATA
ACGACGTCATGGCTAAAGTCCCTCTTTTTTACGGCAGCACTGGGTCTAGA
ACCACATGAAAGCCATCGATTTCATACGGATCCAGGAGGAGTCAGCATTA
TCGACCTTAGCTCGGAATCTGGTCTTGGGGTCGAGAATATCCGTGTCGAC
AGTTTTAACGCCCACGCTAATTCATCAAATGGACCTCTTCTTGGCTACAC
TTTTGCAATAGGGGCGCACAACTAG