Gcaud2353.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2353.t1
Unique NameGcaud2353.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:45052..45664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708848.1
Preferred nameNUTF2
PFAMsNTF2
Max annot lvl2759|Eukaryota
KEGG koko:K12669
KEGG TC9.A.45.1.2,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0000060,GO:0001817,GO:0001818,GO:0002225,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002759,GO:0002760,GO:0002784,GO:0002805,GO:0002807,GO:0002831,GO:0002833,GO:0002920,GO:0002922,GO:0003674,GO:0005198,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005640,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0009889,GO:0009891,GO:0009893,GO:0010574,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017056,GO:0019222,GO:0019867,GO:0019899,GO:0031090,GO:0031224,GO:0031267,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031965,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032101,GO:0032103,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0034248,GO:0034250,GO:0034504,GO:0034613,GO:0042175,GO:0042306,GO:0042307,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044613,GO:0045184,GO:0046822,GO:0046824,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051020,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0060341,GO:0061608,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0090087,GO:0090204,GO:0090316,GO:0090435,GO:0098588,GO:0098805,GO:0140104,GO:0140142,GO:1900180,GO:1900182,GO:1903827,GO:1903829,GO:1904046,GO:1904589,GO:1904591,GO:1904951
Evalue4.28e-51
EggNOG OGsKOG2104@1|root,KOG2104@2759|Eukaryota
DescriptionRan GTPase binding
COG categoryS
BRITEko00000,ko00001,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2353Gcaud2353Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 45052..45664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2353.t1Gcaud2353.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 45052..45664 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2353.t1.stop1Gcaud2353.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 45052..45054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2353.t1.CDS1Gcaud2353.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 45052..45276 -
Gcaud2353.t1.CDS2Gcaud2353.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 45386..45457 -
Gcaud2353.t1.CDS3Gcaud2353.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 45572..45664 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2353.t1.exon1Gcaud2353.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 45052..45276 -
Gcaud2353.t1.exon2Gcaud2353.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 45386..45457 -
Gcaud2353.t1.exon3Gcaud2353.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 45572..45664 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2353.t1.intron1Gcaud2353.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_48_length_65905_cov_4.503282 45277..45385 -
Gcaud2353.t1.intron2Gcaud2353.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_48_length_65905_cov_4.503282 45458..45571 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2353.t1.start1Gcaud2353.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 45662..45664 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2353.t1 ID=Gcaud2353.t1|Name=Gcaud2353.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=130bp
MSSEVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNI
INKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMK
FAQCFFLLPISGDGKSFWVHNDIFRLNYG*
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spliced messenger RNA

>Gcaud2353.t1 ID=Gcaud2353.t1|Name=Gcaud2353.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:45052..45664- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAGCGAAGTCGATCAAATCGGAAAGGCTTTTGTCCAGCATTACTA
CAACATATTTGACACTAACCGGGAGAACTTGCGGTCGCTTTATAAGGAGT
CCAGCATCTTGTCCTTCGAGGGAGAGATGTGCATCGGACCAGACAACATC
ATCAACAAATTAACCAGTCTTCCGCTTCAGAAAGTCCGCCATCAAATCAC
ATCTCTTGACTGTCAGTATACCCCTGCTGTACAGCCGAATGGAATTCTTA
TTTCTGTTAGCGGCAATCTGGTACTTGACAACGAGCAGAACCCGATGAAA
TTTGCACAATGCTTCTTCCTGTTACCAATATCCGGAGACGGCAAGAGCTT
TTGGGTTCATAACGATATTTTCCGTCTCAACTATGGTTAA
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protein sequence of Gcaud2353.t1

>Gcaud2353.t1 ID=Gcaud2353.t1|Name=Gcaud2353.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=130bp
MSSEVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNI
INKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMK
FAQCFFLLPISGDGKSFWVHNDIFRLNYG*
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mRNA from alignment at NODE_48_length_65905_cov_4.503282:45052..45664-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2353.t1 ID=Gcaud2353.t1|Name=Gcaud2353.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=613bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:45052..45664- (Gracilaria caudata M_176_S67 male)
ATGAGTAGCGAAGTCGATCAAATCGGAAAGGCTTTTGTCCAGCATTACTA
CAACATATTTGACACTAACCGGGAGAACTTGCGGTCGCTTTATGTAAGTT
GCGCCATGGATCCCTTTCGTTAAAGACTCATCTATTGTACAATTTGATCT
GTTTTCGTGGCCACTAATCCGGTTGAAATTCGCGTGCGACCCGTTCTCGT
TCTGTAGAAGGAGTCCAGCATCTTGTCCTTCGAGGGAGAGATGTGCATCG
GACCAGACAACATCATCAACAAATTAACCGTAAGTGAGCGCACATTCTAT
TAGCTAAGGCAGAAGAATTCAAACGCCCTCCGTACAAGGTTTCTCGCGGA
GCACTGTTCTAACTATGATTCGCTTTCGACAATAATAGAGTCTTCCGCTT
CAGAAAGTCCGCCATCAAATCACATCTCTTGACTGTCAGTATACCCCTGC
TGTACAGCCGAATGGAATTCTTATTTCTGTTAGCGGCAATCTGGTACTTG
ACAACGAGCAGAACCCGATGAAATTTGCACAATGCTTCTTCCTGTTACCA
ATATCCGGAGACGGCAAGAGCTTTTGGGTTCATAACGATATTTTCCGTCT
CAACTATGGTTAA
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Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:45052..45664-

>Gcaud2353.t1 ID=Gcaud2353.t1|Name=Gcaud2353.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=390bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:45052..45664- (Gracilaria caudata M_176_S67 male)
ATGAGTAGCGAAGTCGATCAAATCGGAAAGGCTTTTGTCCAGCATTACTA
CAACATATTTGACACTAACCGGGAGAACTTGCGGTCGCTTTATAAGGAGT
CCAGCATCTTGTCCTTCGAGGGAGAGATGTGCATCGGACCAGACAACATC
ATCAACAAATTAACCAGTCTTCCGCTTCAGAAAGTCCGCCATCAAATCAC
ATCTCTTGACTGTCAGTATACCCCTGCTGTACAGCCGAATGGAATTCTTA
TTTCTGTTAGCGGCAATCTGGTACTTGACAACGAGCAGAACCCGATGAAA
TTTGCACAATGCTTCTTCCTGTTACCAATATCCGGAGACGGCAAGAGCTT
TTGGGTTCATAACGATATTTTCCGTCTCAACTATGGTTAA
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