Gcaud2351.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2351.t1
Unique Name	Gcaud2351.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	413

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:41485..42863 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI30853
PFAMs	Pkinase
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K08829
Evalue	4.41e-71
EggNOG OGs	KOG0661@1\|root,KOG0661@2759\|Eukaryota,3Q8ZK@4776\|Peronosporales
EC	2.7.11.22
Description	Protein tyrosine kinase
COG category	T
BRITE	ko00000,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2351	Gcaud2351	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 41485..42863 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2351.t1	Gcaud2351.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 41485..42863 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2351.t1.stop1	Gcaud2351.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 41485..41487 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2351.t1.CDS1	Gcaud2351.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 41485..42567 -
Gcaud2351.t1.CDS2	Gcaud2351.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 42638..42706 -
Gcaud2351.t1.CDS3	Gcaud2351.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 42777..42863 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2351.t1.exon1	Gcaud2351.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 41485..42567 -
Gcaud2351.t1.exon2	Gcaud2351.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 42638..42706 -
Gcaud2351.t1.exon3	Gcaud2351.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 42777..42863 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2351.t1.intron1	Gcaud2351.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_48_length_65905_cov_4.503282 42568..42637 -
Gcaud2351.t1.intron2	Gcaud2351.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_48_length_65905_cov_4.503282 42707..42776 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2351.t1.start1	Gcaud2351.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 42861..42863 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:41485..42863-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:41485..42863-

mRNA sequence

>Gcaud2351.t1 ID=Gcaud2351.t1|Name=Gcaud2351.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=413bp
MHRYRIGKPLGEGAFGTVCEATHRESGERVAIKILKDKCKNMDAMMALPE
IKALRFLSHPNIVRCKELLLDRRGYVNMVFELLLGGNLESLARRREKPFT
ERDVRSVFYQLLKATGYMHSQRYLHRDIKPENILLESSRPSDGIKAKLAD
LGLSKRLSSTNDRPHTTYVATRWYRSPEILLHLSNYGYPSDMWAIGTVMA
EMIRLGDPLFPGSNEDEQLARIVALRGHPSMVNWKAGEAAMKRRRIRLPK
VTPSSLKTVIRDTSPPTLQLISDLLELDPEKRPTAAEALAYPLFLINNQD
EDVMFRSRKRRRLMSEGPDTARMREYPATAFTYRSEENHGIEEIDLLRTP
SRREHPPLVHAEELVHPRQFYGSVSDLPDFNLSPFREHSDDSEQRFSRQS
EPAGLFSFHVVR*

spliced messenger RNA

>Gcaud2351.t1 ID=Gcaud2351.t1|Name=Gcaud2351.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:41485..42863- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGATATCGCATTGGCAAACCACTAGGCGAAGGGGCTTTTGGAAC
GGTGTGTGAAGCTACTCATCGAGAATCAGGAGAAAGAGTTGCAATCAAGA
TTCTCAAGGACAAATGCAAAAACATGGATGCCATGATGGCGCTTCCAGAA
ATCAAAGCTCTACGGTTCTTGTCTCATCCGAACATTGTCAGGTGTAAGGA
GCTCCTTCTGGACCGAAGGGGCTATGTTAACATGGTTTTTGAATTGTTAC
TTGGTGGAAACCTCGAAAGTCTTGCTCGAAGACGCGAAAAGCCGTTCACC
GAAAGGGATGTACGATCCGTTTTCTACCAGCTTCTTAAGGCTACGGGCTA
CATGCATTCCCAAAGATATCTGCATCGAGATATAAAACCAGAGAACATTC
TACTCGAATCTTCTAGACCTAGCGATGGCATCAAGGCAAAACTTGCCGAT
CTTGGCCTTTCCAAGAGACTAAGCTCAACAAACGACCGTCCCCATACAAC
TTATGTTGCGACCAGATGGTACAGAAGCCCGGAAATTCTCTTGCATTTGT
CAAACTATGGATATCCCAGTGATATGTGGGCAATTGGGACGGTAATGGCC
GAGATGATACGTCTTGGAGATCCACTGTTTCCCGGAAGTAATGAAGATGA
ACAGTTGGCTCGAATTGTAGCCCTAAGGGGCCACCCTTCCATGGTCAACT
GGAAAGCTGGAGAAGCTGCCATGAAAAGGCGGCGAATTCGCCTTCCCAAA
GTTACTCCCTCATCTTTGAAGACTGTAATTCGAGATACCAGTCCTCCGAC
ATTGCAACTTATCTCGGACTTGCTTGAGCTTGATCCGGAAAAGCGACCCA
CAGCGGCCGAAGCACTCGCTTATCCTTTGTTCCTCATAAATAATCAGGAC
GAAGACGTCATGTTTAGATCTCGAAAGCGTCGGAGGCTTATGTCTGAAGG
TCCTGACACAGCACGAATGAGGGAATATCCAGCGACAGCTTTCACTTATC
GAAGCGAAGAAAACCACGGAATTGAAGAAATCGACTTGCTGCGCACGCCG
TCACGTCGTGAACATCCACCGCTCGTGCATGCCGAAGAATTAGTTCACCC
GCGGCAATTTTATGGTTCTGTGTCTGATCTCCCTGATTTCAATCTTTCTC
CTTTTCGTGAACACTCTGATGATTCAGAACAGCGCTTTTCACGTCAAAGT
GAACCAGCAGGACTTTTTAGTTTCCATGTTGTTCGCTAA

protein sequence of Gcaud2351.t1

>Gcaud2351.t1 ID=Gcaud2351.t1|Name=Gcaud2351.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=413bp
MHRYRIGKPLGEGAFGTVCEATHRESGERVAIKILKDKCKNMDAMMALPE
IKALRFLSHPNIVRCKELLLDRRGYVNMVFELLLGGNLESLARRREKPFT
ERDVRSVFYQLLKATGYMHSQRYLHRDIKPENILLESSRPSDGIKAKLAD
LGLSKRLSSTNDRPHTTYVATRWYRSPEILLHLSNYGYPSDMWAIGTVMA
EMIRLGDPLFPGSNEDEQLARIVALRGHPSMVNWKAGEAAMKRRRIRLPK
VTPSSLKTVIRDTSPPTLQLISDLLELDPEKRPTAAEALAYPLFLINNQD
EDVMFRSRKRRRLMSEGPDTARMREYPATAFTYRSEENHGIEEIDLLRTP
SRREHPPLVHAEELVHPRQFYGSVSDLPDFNLSPFREHSDDSEQRFSRQS
EPAGLFSFHVVR*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:41485..42863-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2351.t1 ID=Gcaud2351.t1|Name=Gcaud2351.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1379bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:41485..42863- (Gracilaria caudata M_176_S67 male)
ATGCACAGATATCGCATTGGCAAACCACTAGGCGAAGGGGCTTTTGGAAC
GGTGTGTGAAGCTACTCATCGAGAATCAGGAGAAAGAGTGAGTGACACAC
CATTATTAGTTCTCATTAGACCACATGCGAATTAACGCCGTTCCTATCGT
TGATCAGGTTGCAATCAAGATTCTCAAGGACAAATGCAAAAACATGGATG
CCATGATGGCGCTTCCAGAAATCAAAGTGAGTTCTTTGTTTCCATTTGAT
ATGCGAAAGCAACTCAAGTTCCAAGACTCCAACTGACTTTCAGTAGGCTC
TACGGTTCTTGTCTCATCCGAACATTGTCAGGTGTAAGGAGCTCCTTCTG
GACCGAAGGGGCTATGTTAACATGGTTTTTGAATTGTTACTTGGTGGAAA
CCTCGAAAGTCTTGCTCGAAGACGCGAAAAGCCGTTCACCGAAAGGGATG
TACGATCCGTTTTCTACCAGCTTCTTAAGGCTACGGGCTACATGCATTCC
CAAAGATATCTGCATCGAGATATAAAACCAGAGAACATTCTACTCGAATC
TTCTAGACCTAGCGATGGCATCAAGGCAAAACTTGCCGATCTTGGCCTTT
CCAAGAGACTAAGCTCAACAAACGACCGTCCCCATACAACTTATGTTGCG
ACCAGATGGTACAGAAGCCCGGAAATTCTCTTGCATTTGTCAAACTATGG
ATATCCCAGTGATATGTGGGCAATTGGGACGGTAATGGCCGAGATGATAC
GTCTTGGAGATCCACTGTTTCCCGGAAGTAATGAAGATGAACAGTTGGCT
CGAATTGTAGCCCTAAGGGGCCACCCTTCCATGGTCAACTGGAAAGCTGG
AGAAGCTGCCATGAAAAGGCGGCGAATTCGCCTTCCCAAAGTTACTCCCT
CATCTTTGAAGACTGTAATTCGAGATACCAGTCCTCCGACATTGCAACTT
ATCTCGGACTTGCTTGAGCTTGATCCGGAAAAGCGACCCACAGCGGCCGA
AGCACTCGCTTATCCTTTGTTCCTCATAAATAATCAGGACGAAGACGTCA
TGTTTAGATCTCGAAAGCGTCGGAGGCTTATGTCTGAAGGTCCTGACACA
GCACGAATGAGGGAATATCCAGCGACAGCTTTCACTTATCGAAGCGAAGA
AAACCACGGAATTGAAGAAATCGACTTGCTGCGCACGCCGTCACGTCGTG
AACATCCACCGCTCGTGCATGCCGAAGAATTAGTTCACCCGCGGCAATTT
TATGGTTCTGTGTCTGATCTCCCTGATTTCAATCTTTCTCCTTTTCGTGA
ACACTCTGATGATTCAGAACAGCGCTTTTCACGTCAAAGTGAACCAGCAG
GACTTTTTAGTTTCCATGTTGTTCGCTAA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:41485..42863-

>Gcaud2351.t1 ID=Gcaud2351.t1|Name=Gcaud2351.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1239bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:41485..42863- (Gracilaria caudata M_176_S67 male)
ATGCACAGATATCGCATTGGCAAACCACTAGGCGAAGGGGCTTTTGGAAC
GGTGTGTGAAGCTACTCATCGAGAATCAGGAGAAAGAGTTGCAATCAAGA
TTCTCAAGGACAAATGCAAAAACATGGATGCCATGATGGCGCTTCCAGAA
ATCAAAGCTCTACGGTTCTTGTCTCATCCGAACATTGTCAGGTGTAAGGA
GCTCCTTCTGGACCGAAGGGGCTATGTTAACATGGTTTTTGAATTGTTAC
TTGGTGGAAACCTCGAAAGTCTTGCTCGAAGACGCGAAAAGCCGTTCACC
GAAAGGGATGTACGATCCGTTTTCTACCAGCTTCTTAAGGCTACGGGCTA
CATGCATTCCCAAAGATATCTGCATCGAGATATAAAACCAGAGAACATTC
TACTCGAATCTTCTAGACCTAGCGATGGCATCAAGGCAAAACTTGCCGAT
CTTGGCCTTTCCAAGAGACTAAGCTCAACAAACGACCGTCCCCATACAAC
TTATGTTGCGACCAGATGGTACAGAAGCCCGGAAATTCTCTTGCATTTGT
CAAACTATGGATATCCCAGTGATATGTGGGCAATTGGGACGGTAATGGCC
GAGATGATACGTCTTGGAGATCCACTGTTTCCCGGAAGTAATGAAGATGA
ACAGTTGGCTCGAATTGTAGCCCTAAGGGGCCACCCTTCCATGGTCAACT
GGAAAGCTGGAGAAGCTGCCATGAAAAGGCGGCGAATTCGCCTTCCCAAA
GTTACTCCCTCATCTTTGAAGACTGTAATTCGAGATACCAGTCCTCCGAC
ATTGCAACTTATCTCGGACTTGCTTGAGCTTGATCCGGAAAAGCGACCCA
CAGCGGCCGAAGCACTCGCTTATCCTTTGTTCCTCATAAATAATCAGGAC
GAAGACGTCATGTTTAGATCTCGAAAGCGTCGGAGGCTTATGTCTGAAGG
TCCTGACACAGCACGAATGAGGGAATATCCAGCGACAGCTTTCACTTATC
GAAGCGAAGAAAACCACGGAATTGAAGAAATCGACTTGCTGCGCACGCCG
TCACGTCGTGAACATCCACCGCTCGTGCATGCCGAAGAATTAGTTCACCC
GCGGCAATTTTATGGTTCTGTGTCTGATCTCCCTGATTTCAATCTTTCTC
CTTTTCGTGAACACTCTGATGATTCAGAACAGCGCTTTTCACGTCAAAGT
GAACCAGCAGGACTTTTTAGTTTCCATGTTGTTCGCTAA