Gcaud2344.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2344.t1
Unique NameGcaud2344.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:28621..29094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705453.1
Preferred nameLYRM1
PFAMsComplex1_LYR
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0030496,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Evalue1.64e-25
EggNOG OGs2BPRX@1|root,2S0XV@2759|Eukaryota
DescriptionComplex 1 protein (LYR family)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2344Gcaud2344Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 28621..29094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2344.t1Gcaud2344.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 28621..29094 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2344.t1.start1Gcaud2344.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 28621..28623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2344.t1.CDS1Gcaud2344.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 28621..28681 +
Gcaud2344.t1.CDS2Gcaud2344.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 28811..29094 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2344.t1.exon1Gcaud2344.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 28621..28681 +
Gcaud2344.t1.exon2Gcaud2344.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 28811..29094 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2344.t1.intron1Gcaud2344.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_48_length_65905_cov_4.503282 28682..28810 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2344.t1.stop1Gcaud2344.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 29092..29094 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2344.t1 ID=Gcaud2344.t1|Name=Gcaud2344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=115bp
MKYRRQVLSLYRKALRIAKSWEEPSERSYIVNEAKNLILKNKRINSEDII
AEKVQEFEARITTGLHYKIPYPRPTNVAPGATGKDPEVITPVYLDSYKQS
QRGNRKATREKPEY*
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spliced messenger RNA

>Gcaud2344.t1 ID=Gcaud2344.t1|Name=Gcaud2344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:28621..29094+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATATCGAAGACAAGTTCTGTCTCTCTACCGCAAAGCCTTGCGAAT
CGCGAAGTCATGGGAAGAACCCAGCGAGCGTTCGTATATTGTAAATGAAG
CTAAGAATCTCATTCTTAAGAACAAAAGGATAAATTCAGAGGATATTATT
GCAGAGAAGGTTCAGGAATTCGAAGCGAGGATAACGACAGGTCTCCACTA
CAAGATACCGTATCCGAGACCAACAAACGTTGCTCCCGGTGCCACAGGAA
AAGATCCGGAGGTGATAACCCCCGTATATCTGGACTCATATAAGCAATCA
CAACGAGGAAACCGCAAAGCAACAAGGGAAAAACCAGAATACTGA
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protein sequence of Gcaud2344.t1

>Gcaud2344.t1 ID=Gcaud2344.t1|Name=Gcaud2344.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=115bp
MKYRRQVLSLYRKALRIAKSWEEPSERSYIVNEAKNLILKNKRINSEDII
AEKVQEFEARITTGLHYKIPYPRPTNVAPGATGKDPEVITPVYLDSYKQS
QRGNRKATREKPEY*
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mRNA from alignment at NODE_48_length_65905_cov_4.503282:28621..29094+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2344.t1 ID=Gcaud2344.t1|Name=Gcaud2344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:28621..29094+ (Gracilaria caudata M_176_S67 male)
ATGAAATATCGAAGACAAGTTCTGTCTCTCTACCGCAAAGCCTTGCGAAT
CGCGAAGTCATGTAAGTTGCACCAGAAAATCTATTTGGGTAACCGCGGTC
ACGTATGCACAAGAACGGGAATCGACCCAACCATATGATGCTGATATTCT
TTTCAATACTTTCGCGGTGAATATCGGTTTTGAACCTAAGGGGAAGAACC
CAGCGAGCGTTCGTATATTGTAAATGAAGCTAAGAATCTCATTCTTAAGA
ACAAAAGGATAAATTCAGAGGATATTATTGCAGAGAAGGTTCAGGAATTC
GAAGCGAGGATAACGACAGGTCTCCACTACAAGATACCGTATCCGAGACC
AACAAACGTTGCTCCCGGTGCCACAGGAAAAGATCCGGAGGTGATAACCC
CCGTATATCTGGACTCATATAAGCAATCACAACGAGGAAACCGCAAAGCA
ACAAGGGAAAAACCAGAATACTGA
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Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:28621..29094+

>Gcaud2344.t1 ID=Gcaud2344.t1|Name=Gcaud2344.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=345bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:28621..29094+ (Gracilaria caudata M_176_S67 male)
ATGAAATATCGAAGACAAGTTCTGTCTCTCTACCGCAAAGCCTTGCGAAT
CGCGAAGTCATGGGAAGAACCCAGCGAGCGTTCGTATATTGTAAATGAAG
CTAAGAATCTCATTCTTAAGAACAAAAGGATAAATTCAGAGGATATTATT
GCAGAGAAGGTTCAGGAATTCGAAGCGAGGATAACGACAGGTCTCCACTA
CAAGATACCGTATCCGAGACCAACAAACGTTGCTCCCGGTGCCACAGGAA
AAGATCCGGAGGTGATAACCCCCGTATATCTGGACTCATATAAGCAATCA
CAACGAGGAAACCGCAAAGCAACAAGGGAAAAACCAGAATACTGA
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