|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2341.t1.start1 | Gcaud2341.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_48_length_65905_cov_4.503282 18861..18863 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2341.t1.stop1 | Gcaud2341.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_48_length_65905_cov_4.503282 22527..22529 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2341.t1 ID=Gcaud2341.t1|Name=Gcaud2341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=725bp MNASSDSDSVRSASPKKHSQLFHAPLLFQPHQATEASRSACLPLRAMLLS RLFPAAALVGHLVFFSLHADFNFTEYLTWNYVATTLALLLALTCSLLDLI HDHPDQQDNETSPFSNSTEQNVLDDVERQSQILAPSTEPKLLLFFTRITV PVYQLALSATLFGTVVFWAAVYTNATIPITYALLAQAVASPAIALADFLL SFRMNFRLIYLAPYILYNAAYLVVAYTLTERAYLFVFLRRDISRSAFVAK AAGLAAACIFTAVLLYFITALRSLRSTRSLPDAISARSKSHMNEDRAESA SGSAVSSHHSDLSQLGLRRVPSNSFYGSAEFVHVEDEERLDRSTSSARDR SSIPINLGGGSSGRSSFFRASSARLTASLSGGSSREGRSGFVRNASTSSM WDDMEQPSPQKEEEVFSMPACYNESQQSKVATSSLVSDSDTAAQIPRETR DLAPDIRFPSCPTYKPHTLSEAGGSVWVSSRVILLWRLTCTWLFVFTLGV FAPSGQFNYEWLSTWVYIGQSSSIKPGQRVFRLLASSTVCMYQIFFSLSA GVDVIYWLVLKEKEGLKISRILLHAINFVLLFVDSFLSLRMAFHLTYVFV TIAIVATWLIFAWIRYAVTKQWVHQVLDFRVVGSARAATVHIIIFLTFFA VASLLLLVNRLNRLNFISRRIQSIIADELQVSFTSTTIDEENQGNDDLDY ILFETQIKSDTGKSLKTINAPISS* back to topspliced messenger RNA >Gcaud2341.t1 ID=Gcaud2341.t1|Name=Gcaud2341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2175bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:18861..22529+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAACGCCTCATCCGACTCTGACTCCGTGCGTTCCGCGTCGCCAAAGAA GCATTCGCAGCTCTTTCACGCTCCGCTGTTGTTCCAGCCGCATCAAGCTA CCGAGGCGTCGCGCTCCGCCTGTCTGCCGTTGCGCGCCATGTTGCTTTCA CGCCTGTTTCCCGCCGCCGCCCTCGTCGGTCATCTCGTCTTCTTTTCGCT GCACGCCGATTTCAACTTTACCGAGTATCTCACATGGAATTATGTCGCTA CCACTCTTGCTTTACTGCTCGCCCTAACCTGCTCTCTTCTAGACCTCATC CACGACCATCCCGATCAACAAGACAACGAAACATCACCTTTCTCTAACTC CACCGAACAAAATGTACTTGACGACGTCGAGCGTCAGTCCCAAATCCTCG CCCCGTCCACTGAACCCAAATTGCTCCTGTTCTTCACCCGCATCACAGTT CCAGTTTACCAGTTGGCCCTGTCCGCTACCCTGTTCGGCACCGTCGTTTT CTGGGCCGCCGTCTACACCAATGCTACAATTCCCATCACGTACGCCCTCC TCGCGCAGGCCGTTGCTTCGCCCGCCATCGCTCTCGCGGACTTTCTTCTC TCCTTTCGAATGAATTTCCGTCTCATCTATCTCGCGCCCTATATCCTGTA CAATGCCGCCTACCTCGTCGTGGCCTACACACTCACAGAACGTGCCTACC TTTTCGTGTTTCTTCGTCGCGACATCAGTCGCAGTGCGTTTGTGGCAAAG GCTGCCGGTTTGGCTGCCGCTTGCATCTTCACCGCTGTTTTGCTCTACTT CATTACTGCCTTGCGTTCCCTGCGTTCGACCAGATCGCTACCAGATGCCA TTTCCGCGAGGAGTAAGTCGCACATGAACGAAGACCGCGCTGAGTCTGCC TCGGGCTCCGCTGTGTCCTCTCACCATTCTGATTTGTCGCAGCTCGGGCT TCGTCGCGTCCCAAGCAACTCTTTCTACGGTAGTGCTGAGTTTGTGCACG TTGAAGACGAGGAAAGACTGGATCGCTCTACGTCCTCTGCTCGCGACCGC TCATCAATACCTATCAACCTTGGAGGTGGTAGCTCAGGACGCAGTTCGTT TTTCCGCGCGTCCAGCGCTCGCTTGACTGCATCTCTGTCCGGTGGTAGTT CAAGGGAGGGACGCTCTGGCTTTGTTCGCAATGCCTCTACATCCAGTATG TGGGACGATATGGAACAACCATCTCCCCAAAAAGAAGAGGAGGTGTTCTC CATGCCCGCTTGCTACAATGAGTCACAACAATCCAAGGTAGCCACATCGT CCCTAGTGTCAGACTCGGACACAGCGGCGCAAATACCGAGGGAAACTCGC GACTTGGCACCGGATATTCGTTTTCCTTCTTGCCCGACCTATAAACCTCA CACTCTATCCGAAGCAGGAGGCTCCGTTTGGGTGTCGTCTCGTGTCATTC TCCTTTGGAGATTAACTTGCACATGGTTATTCGTGTTCACTCTCGGGGTG TTCGCTCCAAGTGGACAGTTCAATTATGAATGGCTAAGTACTTGGGTGTA TATCGGGCAATCGTCCTCAATCAAGCCTGGGCAACGGGTTTTCCGGCTTT TGGCCAGTTCAACGGTATGCATGTACCAAATATTCTTTTCGCTTTCGGCA GGTGTCGATGTTATATACTGGCTTGTGCTAAAGGAGAAGGAAGGCTTGAA AATATCGCGCATACTCCTCCACGCTATTAACTTTGTGCTTCTCTTCGTGG ATTCATTTCTCTCGTTGCGAATGGCCTTTCACCTTACTTACGTGTTTGTA ACCATTGCTATTGTCGCCACATGGTTAATATTCGCATGGATCCGATACGC CGTGACAAAGCAGTGGGTGCATCAAGTTCTAGATTTTAGGGTCGTTGGAA GCGCTCGAGCAGCTACGGTCCATATCATAATATTTCTCACATTCTTTGCC GTCGCCTCATTGTTACTCCTTGTAAACCGCTTGAATCGTCTAAACTTCAT AAGTCGAAGGATACAATCAATTATAGCCGATGAGCTCCAAGTGTCATTCA CATCTACCACAATCGATGAAGAAAACCAAGGAAACGATGACCTTGATTAC ATCCTATTTGAAACACAAATCAAATCTGACACGGGAAAATCGTTGAAGAC CATAAATGCTCCCATTTCCAGCTGA back to topprotein sequence of Gcaud2341.t1 >Gcaud2341.t1 ID=Gcaud2341.t1|Name=Gcaud2341.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=725bp
MNASSDSDSVRSASPKKHSQLFHAPLLFQPHQATEASRSACLPLRAMLLS RLFPAAALVGHLVFFSLHADFNFTEYLTWNYVATTLALLLALTCSLLDLI HDHPDQQDNETSPFSNSTEQNVLDDVERQSQILAPSTEPKLLLFFTRITV PVYQLALSATLFGTVVFWAAVYTNATIPITYALLAQAVASPAIALADFLL SFRMNFRLIYLAPYILYNAAYLVVAYTLTERAYLFVFLRRDISRSAFVAK AAGLAAACIFTAVLLYFITALRSLRSTRSLPDAISARSKSHMNEDRAESA SGSAVSSHHSDLSQLGLRRVPSNSFYGSAEFVHVEDEERLDRSTSSARDR SSIPINLGGGSSGRSSFFRASSARLTASLSGGSSREGRSGFVRNASTSSM WDDMEQPSPQKEEEVFSMPACYNESQQSKVATSSLVSDSDTAAQIPRETR DLAPDIRFPSCPTYKPHTLSEAGGSVWVSSRVILLWRLTCTWLFVFTLGV FAPSGQFNYEWLSTWVYIGQSSSIKPGQRVFRLLASSTVCMYQIFFSLSA GVDVIYWLVLKEKEGLKISRILLHAINFVLLFVDSFLSLRMAFHLTYVFV TIAIVATWLIFAWIRYAVTKQWVHQVLDFRVVGSARAATVHIIIFLTFFA VASLLLLVNRLNRLNFISRRIQSIIADELQVSFTSTTIDEENQGNDDLDY ILFETQIKSDTGKSLKTINAPISS* back to topmRNA from alignment at NODE_48_length_65905_cov_4.503282:18861..22529+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2341.t1 ID=Gcaud2341.t1|Name=Gcaud2341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3669bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:18861..22529+ (Gracilaria caudata M_176_S67 male) ATGAACGCCTCATCCGACTCTGACTCCGTGCGTTCCGCGTCGCCAAAGAA
GCATTCGCAGCTCTTTCACGCTCCGCTGTTGTTCCAGCCGCATCAAGCTA
CCGAGGCGTCGCGCTCCGCCTGTCTGCCGTTGCGCGCCATGTTGCTTTCA
CGCCTGTTTCCCGCCGCCGCCCTCGTCGGTCATCTCGTCTTCTTTTCGCT
GCACGCCGATTTCAACTTTACCGAGTATCTCACATGGAATTATGTCGCTA
CCACTCTTGCTTTACTGCTCGCCCTAACCTGCTCTCTTCTAGACCTCATC
CACGACCATCCCGATCAACAAGACAACGAAACATCACCTTTCTCTAACTC
CACCGAACAAAATGTACTTGACGACGTCGAGCGTCAGTCCCAAATCCTCG
CCCCGTCCACTGAACCCAAATTGCTCCTGTTCTTCACCCGCATCACAGTT
CCAGTTTACCAGTTGGCCCTGTCCGCTACCCTGTTCGGCACCGTCGTTTT
CTGGGCCGCCGTCTACACCAATGCTACAATTCCCATCACGTACGCCCTCC
TCGCGCAGGCCGTTGCTTCGCCCGCCATCGCTCTCGCGGACTTTCTTCTC
TCCTTTCGAATGAATTTCCGTCTCATCTATCTCGCGCCCTATATCCTGTA
CAATGCCGCCTACCTCGTCGTGGCCTACACACTCACAGAACGTGCCTACC
TTTTCGTGTTTCTTCGTCGCGACATCAGTCGCAGTGCGTTTGTGGCAAAG
GCTGCCGGTTTGGCTGCCGCTTGCATCTTCACCGCTGTTTTGCTCTACTT
CATTACTGCCTTGCGTTCCCTGCGTTCGACCAGATCGCTACCAGATGCCA
TTTCCGCGAGGAGTAAGTCGCACATGAACGAAGACCGCGCTGAGTCTGCC
TCGGGCTCCGCTGTGTCCTCTCACCATTCTGATTTGTCGCAGCTCGGGCT
TCGTCGCGTCCCAAGCAACTCTTTCTACGGTAGTGCTGAGTTTGTGCACG
TTGAAGACGAGGAAAGACTGGATCGCTCTACGTCCTCTGCTCGCGACCGC
TCATCAATACCTATCAACCTTGGAGGTGGTAGCTCAGGACGCAGTTCGTT
TTTCCGCGCGTCCAGCGCTCGCTTGACTGCATCTCTGTCCGGTGGTAGTT
CAAGGGAGGGACGCTCTGGCTTTGTTCGCAATGCCTCTACATCCAGTATG
TGGGACGATATGGAACAACCATCTCCCCAAAAAGAAGAGGAGGTGTTCTC
CATGCCCGCTTGCTACAATGAGTCACAACAATCCAAGGTAGCCACATCGT
CCCTAGTGTCAGACTCGGACACAGCGGCGCAAATACCGAGGGTAATTTCC
AGACAAGCGACGGGCAGATTCTCAAGGACTAGTTCGTCAAGTAGTGCTCG
TCTGGGCCCTGCTCCACATTTGCCTTCCTCAGCTTTCACTGCATCAATGT
TAGCACGGAATAGCAGCGCTCACCATTCAATGGACAGGAAAAGCTGGAGA
GGCGGCGGTGCAGAAACTCGGTGATCGAAATTTGCCTTGCATGCAGATCA
GGTTACAGCAGTTTCCCTTACCGTTATTTTTTCTTGCGTGGGCAGCAGCT
CCGATGACAAGCCGTTCCCATTGTTGAAGGATGCTCCTCATCCGGGATGC
AGTGTATGCTTTAATCGCAGTTAATGGGTGGCTCATCTTTTTTTTTCGTC
TTCGTCAAGTCCACCCTCTGACTCGGTTCAACATTTTGACATCCACCGAT
GACCCTTTAAATCATGCGCGTGGTTGGGAGAGGGTTCGGCATTGACCACC
AAGTTAGTGGCCAGATAGTATAATATGTCTGCACCACGTAAACGTGGTTA
ACTTCTTTGGAACCGTTTGAGTTTCGGCCCTGTCTACATGTAGATTTCGT
GAGATTTATCGGGAACCCTGTCGAGACTGTTTACTGCTTGTCCCTATACA
GACCCTAGAAAGATCACCACTACGAAACGCAGTAAAAGGAGCCAATTCAG
ATGCCTCATGACTTCATGTAGTCGTTGGGCAGTTTTGCTAATCACGGGTG
ACACAGAAGTGTGCGCCTTTGCTTTTATTAAGTCTCACCCTTCTGCGAGA
ACTATTCCGCCGGGGCGCTGCTTATGCGTCCAAAGTACGGGAAGCACCTG
GACGAGAAGCAACTGTTTCTGAACCTGTCAAGAGCAGTATTCATCAAGAT
GTCAAGCTCTTTAAGATGGGTCTCATACGGTAGCCCTGAATAGGCAGAGT
AATGTTCAACAAAAGTTGATCAAGTATGGATCTTGCCAACACATGCTTCT
CTCATTATCTGGCCCTTCGGACAGACTTAATATTATCGTTGTTACTGAAA
ACAGCTCAAAACCTGGGCAGCTCTAGGAATACACCGGAACTGCACAATAA
AGTTTTACCAACGTATCCCGGGACAGAACTATTCAGGAACTGGGTTTCAC
ATCAATTTCCAGTTGGTTCGTTTCGTTCGCAATTTTGTTCAACGAACTAC
TGTTACCACAGTCTGTGCTTCACAGACAATCATCCCTTGCACATGTAATC
CACCACAGCCTTCGCAATCCAACCTCGCTCATTCTGTTTCTTGACCGTTG
CAAACCGGAGATACAGATGATAAAGATACCACCTCGGGCTCTACACTATG
GAGAAGAGCTGCTGGGCAAACGGTCATTTCCTGAAAGTTCATCACAAACG
TCAGCATCCACCAGGAGTATTTTTCGATCCACTAGCAGCTCCCAGTCTCA
GGATTTTGTTCACAAACATCTGCAGGAAACTCGCGACTTGGCACCGGATA
TTCGTTTTCCTTCTTGCCCGACCTATAAACCTCACACTCTATCCGAAGCA
GGAGGCTCCGTTTGGGTGTCGTCTCGTGTCATTCTCCTTTGGAGATTAAC
TTGCACATGGTTATTCGTGTTCACTCTCGGGGTGTTCGCTCCAAGTGGAC
AGTTCAATTATGAATGGCTAAGTACTTGGGTGTATATCGGGGTAAGTTGC
ACAATGATTCTGGCGACCGTTAGCTCTTTGCTGTATCATTTGTATCCCGA
GCAATCGTCCTCAATCAAGCCTGGGCAACGGGTTTTCCGGCTTTTGGCCA
GTTCAACGGTATGCATGTACCAAATATTCTTTTCGCTTTCGGCAGGTGTC
GATGTTATATACTGGCTTGTGCTAAAGGAGAAGGAAGGCTTGAAAATATC
GCGCATACTCCTCCACGCTATTAACTTTGTGCTTCTCTTCGTGGATTCAT
TTCTCTCGTTGCGAATGGCCTTTCACCTTACTTACGTGTTTGTAACCATT
GCTATTGTCGCCACATGGTTAATATTCGCATGGATCCGATACGCCGTGAC
AAAGCAGTGGGTGCATCAAGTTCTAGATTTTAGGGTCGTTGGAAGCGCTC
GAGCAGCTACGGTCCATATCATAATATTTCTCACATTCTTTGCCGTCGCC
TCATTGTTACTCCTTGTAAACCGCTTGAATCGTCTAAACTTCATAAGTCG
AAGGATACAATCAATTATAGCCGATGAGCTCCAAGTGTCATTCACATCTA
CCACAATCGATGAAGAAAACCAAGGAAACGATGACCTTGATTACATCCTA
TTTGAAACACAAATCAAATCTGACACGGGAAAATCGTTGAAGACCATAAA
TGCTCCCATTTCCAGCTGA back to topCoding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:18861..22529+ >Gcaud2341.t1 ID=Gcaud2341.t1|Name=Gcaud2341.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2175bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:18861..22529+ (Gracilaria caudata M_176_S67 male) ATGAACGCCTCATCCGACTCTGACTCCGTGCGTTCCGCGTCGCCAAAGAA GCATTCGCAGCTCTTTCACGCTCCGCTGTTGTTCCAGCCGCATCAAGCTA CCGAGGCGTCGCGCTCCGCCTGTCTGCCGTTGCGCGCCATGTTGCTTTCA CGCCTGTTTCCCGCCGCCGCCCTCGTCGGTCATCTCGTCTTCTTTTCGCT GCACGCCGATTTCAACTTTACCGAGTATCTCACATGGAATTATGTCGCTA CCACTCTTGCTTTACTGCTCGCCCTAACCTGCTCTCTTCTAGACCTCATC CACGACCATCCCGATCAACAAGACAACGAAACATCACCTTTCTCTAACTC CACCGAACAAAATGTACTTGACGACGTCGAGCGTCAGTCCCAAATCCTCG CCCCGTCCACTGAACCCAAATTGCTCCTGTTCTTCACCCGCATCACAGTT CCAGTTTACCAGTTGGCCCTGTCCGCTACCCTGTTCGGCACCGTCGTTTT CTGGGCCGCCGTCTACACCAATGCTACAATTCCCATCACGTACGCCCTCC TCGCGCAGGCCGTTGCTTCGCCCGCCATCGCTCTCGCGGACTTTCTTCTC TCCTTTCGAATGAATTTCCGTCTCATCTATCTCGCGCCCTATATCCTGTA CAATGCCGCCTACCTCGTCGTGGCCTACACACTCACAGAACGTGCCTACC TTTTCGTGTTTCTTCGTCGCGACATCAGTCGCAGTGCGTTTGTGGCAAAG GCTGCCGGTTTGGCTGCCGCTTGCATCTTCACCGCTGTTTTGCTCTACTT CATTACTGCCTTGCGTTCCCTGCGTTCGACCAGATCGCTACCAGATGCCA TTTCCGCGAGGAGTAAGTCGCACATGAACGAAGACCGCGCTGAGTCTGCC TCGGGCTCCGCTGTGTCCTCTCACCATTCTGATTTGTCGCAGCTCGGGCT TCGTCGCGTCCCAAGCAACTCTTTCTACGGTAGTGCTGAGTTTGTGCACG TTGAAGACGAGGAAAGACTGGATCGCTCTACGTCCTCTGCTCGCGACCGC TCATCAATACCTATCAACCTTGGAGGTGGTAGCTCAGGACGCAGTTCGTT TTTCCGCGCGTCCAGCGCTCGCTTGACTGCATCTCTGTCCGGTGGTAGTT CAAGGGAGGGACGCTCTGGCTTTGTTCGCAATGCCTCTACATCCAGTATG TGGGACGATATGGAACAACCATCTCCCCAAAAAGAAGAGGAGGTGTTCTC CATGCCCGCTTGCTACAATGAGTCACAACAATCCAAGGTAGCCACATCGT CCCTAGTGTCAGACTCGGACACAGCGGCGCAAATACCGAGGGAAACTCGC GACTTGGCACCGGATATTCGTTTTCCTTCTTGCCCGACCTATAAACCTCA CACTCTATCCGAAGCAGGAGGCTCCGTTTGGGTGTCGTCTCGTGTCATTC TCCTTTGGAGATTAACTTGCACATGGTTATTCGTGTTCACTCTCGGGGTG TTCGCTCCAAGTGGACAGTTCAATTATGAATGGCTAAGTACTTGGGTGTA TATCGGGCAATCGTCCTCAATCAAGCCTGGGCAACGGGTTTTCCGGCTTT TGGCCAGTTCAACGGTATGCATGTACCAAATATTCTTTTCGCTTTCGGCA GGTGTCGATGTTATATACTGGCTTGTGCTAAAGGAGAAGGAAGGCTTGAA AATATCGCGCATACTCCTCCACGCTATTAACTTTGTGCTTCTCTTCGTGG ATTCATTTCTCTCGTTGCGAATGGCCTTTCACCTTACTTACGTGTTTGTA ACCATTGCTATTGTCGCCACATGGTTAATATTCGCATGGATCCGATACGC CGTGACAAAGCAGTGGGTGCATCAAGTTCTAGATTTTAGGGTCGTTGGAA GCGCTCGAGCAGCTACGGTCCATATCATAATATTTCTCACATTCTTTGCC GTCGCCTCATTGTTACTCCTTGTAAACCGCTTGAATCGTCTAAACTTCAT AAGTCGAAGGATACAATCAATTATAGCCGATGAGCTCCAAGTGTCATTCA CATCTACCACAATCGATGAAGAAAACCAAGGAAACGATGACCTTGATTAC ATCCTATTTGAAACACAAATCAAATCTGACACGGGAAAATCGTTGAAGAC CATAAATGCTCCCATTTCCAGCTGA back to top
|