Gcaud2338.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2338.t1
Unique NameGcaud2338.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:9888..10624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog357808.RoseRS_1927
Preferred namethiE
PFAMsTMP-TENI
Max annot lvl32061|Chloroflexia
KEGG rclassRC00224,RC03255,RC03397
KEGG koko:K00788
KEGG ReactionR03223,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
GOsGO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.19e-44
EggNOG OGsCOG0352@1|root,COG0352@2|Bacteria,2G6P0@200795|Chloroflexi,375RT@32061|Chloroflexia
EC2.5.1.3
DescriptionCondenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2338Gcaud2338Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 9888..10624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2338.t1Gcaud2338.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 9888..10624 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2338.t1.stop1Gcaud2338.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 9888..9890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2338.t1.CDS1Gcaud2338.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 9888..10422 -
Gcaud2338.t1.CDS2Gcaud2338.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 10485..10624 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2338.t1.exon1Gcaud2338.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 9888..10422 -
Gcaud2338.t1.exon2Gcaud2338.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 10485..10624 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2338.t1.intron1Gcaud2338.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_48_length_65905_cov_4.503282 10423..10484 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2338.t1.start1Gcaud2338.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 10622..10624 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2338.t1 ID=Gcaud2338.t1|Name=Gcaud2338.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp
MRVSRHSFDPSVYLVTDRRTAPGMSVQHIVAQVVAAPTNPHRVTFVQLRD
KNVSRADSIQLGKQLRDITACANVAFVVNDDIQLAALLQADGVHLGQDDQ
PVSAARQVLGDDAIVGVSAATEQEIDAAIADGADYIGVGSVFATSSKPDA
GEPLGEHELRRLVRYTNSRIPLVAIGGINVHNAGLCKRAGADGIAVISAI
MASPRPTLAAQQLAAVMASSDISM*
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spliced messenger RNA

>Gcaud2338.t1 ID=Gcaud2338.t1|Name=Gcaud2338.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:9888..10624- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTATCGCGCCACAGCTTCGACCCGTCCGTGTATTTGGTTACGGA
TCGCCGCACGGCGCCCGGAATGAGCGTACAACACATTGTCGCACAAGTGG
TGGCCGCCCCGACAAACCCCCACCGTGTCACCTTTGTGCAACTTCGCGAT
AAGAACGTTTCGCGTGCAGACTCAATTCAACTAGGCAAACAGCTGCGCGA
CATCACAGCGTGCGCCAACGTTGCGTTCGTCGTCAACGATGACATTCAAC
TCGCTGCCCTCTTACAAGCAGATGGCGTCCATCTCGGTCAGGATGATCAG
CCCGTTTCTGCCGCTAGACAGGTGCTAGGCGACGACGCCATCGTCGGCGT
CTCCGCTGCCACAGAGCAAGAAATAGATGCTGCTATAGCTGACGGCGCGG
ACTACATAGGTGTCGGATCAGTTTTTGCAACCTCTTCCAAGCCTGATGCG
GGAGAGCCCCTCGGCGAACACGAGTTAAGACGATTGGTACGCTACACCAA
TTCTAGAATTCCACTTGTTGCCATCGGCGGCATCAACGTACACAACGCTG
GTTTGTGCAAACGTGCTGGCGCAGATGGCATTGCAGTTATTTCAGCCATT
ATGGCGAGCCCTCGACCCACTCTCGCAGCTCAGCAGCTGGCTGCAGTAAT
GGCGAGTAGCGATATTTCCATGTAG
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protein sequence of Gcaud2338.t1

>Gcaud2338.t1 ID=Gcaud2338.t1|Name=Gcaud2338.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MRVSRHSFDPSVYLVTDRRTAPGMSVQHIVAQVVAAPTNPHRVTFVQLRD
KNVSRADSIQLGKQLRDITACANVAFVVNDDIQLAALLQADGVHLGQDDQ
PVSAARQVLGDDAIVGVSAATEQEIDAAIADGADYIGVGSVFATSSKPDA
GEPLGEHELRRLVRYTNSRIPLVAIGGINVHNAGLCKRAGADGIAVISAI
MASPRPTLAAQQLAAVMASSDISM*
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mRNA from alignment at NODE_48_length_65905_cov_4.503282:9888..10624-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2338.t1 ID=Gcaud2338.t1|Name=Gcaud2338.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=737bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:9888..10624- (Gracilaria caudata M_176_S67 male)
ATGCGCGTATCGCGCCACAGCTTCGACCCGTCCGTGTATTTGGTTACGGA
TCGCCGCACGGCGCCCGGAATGAGCGTACAACACATTGTCGCACAAGTGG
TGGCCGCCCCGACAAACCCCCACCGTGTCACCTTTGTGCAGTACGTCTGA
CGATTTCTTTTCGCCGCGTACCACGTCGCTGTCCACACTGACCGATGCGT
AGACTTCGCGATAAGAACGTTTCGCGTGCAGACTCAATTCAACTAGGCAA
ACAGCTGCGCGACATCACAGCGTGCGCCAACGTTGCGTTCGTCGTCAACG
ATGACATTCAACTCGCTGCCCTCTTACAAGCAGATGGCGTCCATCTCGGT
CAGGATGATCAGCCCGTTTCTGCCGCTAGACAGGTGCTAGGCGACGACGC
CATCGTCGGCGTCTCCGCTGCCACAGAGCAAGAAATAGATGCTGCTATAG
CTGACGGCGCGGACTACATAGGTGTCGGATCAGTTTTTGCAACCTCTTCC
AAGCCTGATGCGGGAGAGCCCCTCGGCGAACACGAGTTAAGACGATTGGT
ACGCTACACCAATTCTAGAATTCCACTTGTTGCCATCGGCGGCATCAACG
TACACAACGCTGGTTTGTGCAAACGTGCTGGCGCAGATGGCATTGCAGTT
ATTTCAGCCATTATGGCGAGCCCTCGACCCACTCTCGCAGCTCAGCAGCT
GGCTGCAGTAATGGCGAGTAGCGATATTTCCATGTAG
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Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:9888..10624-

>Gcaud2338.t1 ID=Gcaud2338.t1|Name=Gcaud2338.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=675bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:9888..10624- (Gracilaria caudata M_176_S67 male)
ATGCGCGTATCGCGCCACAGCTTCGACCCGTCCGTGTATTTGGTTACGGA
TCGCCGCACGGCGCCCGGAATGAGCGTACAACACATTGTCGCACAAGTGG
TGGCCGCCCCGACAAACCCCCACCGTGTCACCTTTGTGCAACTTCGCGAT
AAGAACGTTTCGCGTGCAGACTCAATTCAACTAGGCAAACAGCTGCGCGA
CATCACAGCGTGCGCCAACGTTGCGTTCGTCGTCAACGATGACATTCAAC
TCGCTGCCCTCTTACAAGCAGATGGCGTCCATCTCGGTCAGGATGATCAG
CCCGTTTCTGCCGCTAGACAGGTGCTAGGCGACGACGCCATCGTCGGCGT
CTCCGCTGCCACAGAGCAAGAAATAGATGCTGCTATAGCTGACGGCGCGG
ACTACATAGGTGTCGGATCAGTTTTTGCAACCTCTTCCAAGCCTGATGCG
GGAGAGCCCCTCGGCGAACACGAGTTAAGACGATTGGTACGCTACACCAA
TTCTAGAATTCCACTTGTTGCCATCGGCGGCATCAACGTACACAACGCTG
GTTTGTGCAAACGTGCTGGCGCAGATGGCATTGCAGTTATTTCAGCCATT
ATGGCGAGCCCTCGACCCACTCTCGCAGCTCAGCAGCTGGCTGCAGTAAT
GGCGAGTAGCGATATTTCCATGTAG
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