Gcaud2336.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2336.t1
Unique NameGcaud2336.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:5494..6574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708853.1
Preferred namePSMD7
PFAMsJAB,MitMem_reg
Max annot lvl2759|Eukaryota
KEGG koko:K03038,ko:K08825,ko:K20306
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005838,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009896,GO:0009965,GO:0009987,GO:0010016,GO:0010154,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022414,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0030425,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0036477,GO:0042119,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0046983,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051233,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061458,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072686,GO:0090068,GO:0097447,GO:0097458,GO:0097708,GO:0099402,GO:0099503,GO:0101002,GO:0120025,GO:0120038,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905392,GO:1905818,GO:1905820,GO:1990023,GO:2001252
Evalue1.45e-112
EggNOG OGsCOG1310@1|root,KOG1556@2759|Eukaryota
EC2.7.12.1
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
COG categoryZ
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03051,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2336Gcaud2336Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 5494..6574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2336.t1Gcaud2336.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 5494..6574 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2336.t1.stop1Gcaud2336.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 5494..5496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2336.t1.CDS1Gcaud2336.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 5494..5623 -
Gcaud2336.t1.CDS2Gcaud2336.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 5694..6371 -
Gcaud2336.t1.CDS3Gcaud2336.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 6480..6574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2336.t1.exon1Gcaud2336.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 5494..5623 -
Gcaud2336.t1.exon2Gcaud2336.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 5694..6371 -
Gcaud2336.t1.exon3Gcaud2336.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 6480..6574 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2336.t1.intron1Gcaud2336.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_48_length_65905_cov_4.503282 5624..5693 -
Gcaud2336.t1.intron2Gcaud2336.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_48_length_65905_cov_4.503282 6372..6479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2336.t1.start1Gcaud2336.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 6572..6574 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2336.t1 ID=Gcaud2336.t1|Name=Gcaud2336.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=301bp
MAPSIPTSVAVHPLVLLGVIDHYNRVCEDAKKRAVGVLLGHVVKGKVSCT
NCFAVPFEEDEKDPSVWFLDHNFLENMMGMFRKVNARERIVGWYSTGPKI
HTGDLDINELIRSYCPNPVLVIVDVKPKDLGLPTEAYLSIEEAQKDGAVT
KTFEHLPSEIDATDAEEVGVGHLLRDIKDSSISNLTSDITAKSAALMSLG
DRLAELKTYLEEVAAMKLPVNNEIMYRMQDVFNLLPSLNVPKLVRGFHVK
NNDMMLVLLPRRRLLRQLPSLQQRMVPWLQNKLLEAFHVVPVFVVERLLV
*
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spliced messenger RNA

>Gcaud2336.t1 ID=Gcaud2336.t1|Name=Gcaud2336.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=903bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:5494..6574- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCTCGATTCCAACATCCGTAGCGGTGCATCCACTGGTTTTACT
TGGAGTAATTGATCACTACAACAGAGTATGCGAAGATGCCAAAAAACGAG
CGGTCGGTGTGCTATTAGGACATGTAGTTAAAGGAAAAGTCAGTTGCACA
AACTGTTTTGCCGTTCCTTTTGAGGAGGACGAAAAAGATCCATCAGTATG
GTTTCTAGACCACAATTTCCTCGAGAACATGATGGGCATGTTTCGAAAAG
TTAACGCACGGGAACGGATAGTCGGCTGGTATTCGACAGGTCCAAAGATC
CATACCGGGGATCTTGACATCAATGAGCTTATCAGATCGTATTGTCCAAA
TCCTGTGCTCGTCATTGTTGACGTTAAGCCCAAAGATCTTGGATTGCCCA
CAGAAGCATACCTTTCTATCGAAGAAGCTCAAAAAGACGGTGCAGTCACC
AAGACGTTCGAACATCTCCCCAGTGAAATTGACGCAACCGATGCAGAGGA
AGTGGGCGTTGGGCATTTATTGCGGGATATCAAAGACTCTTCGATTTCGA
ATCTCACGAGCGACATCACCGCCAAATCTGCTGCTCTCATGTCGCTTGGC
GATCGTCTTGCTGAACTGAAGACTTATCTTGAGGAGGTGGCCGCAATGAA
GCTCCCAGTGAACAACGAGATCATGTATAGAATGCAAGATGTGTTCAATT
TGCTACCGAGTCTAAATGTGCCCAAACTGGTGAGAGGTTTCCATGTCAAG
AACAATGACATGATGCTAGTACTGCTACCGAGAAGAAGGCTGCTGAGGCA
GCTGCCGTCACTTCAGCAGCGAATGGTACCATGGCTGCAAAATAAACTCC
TCGAAGCCTTTCATGTTGTGCCTGTTTTTGTAGTCGAGCGTCTGCTTGTA
TGA
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protein sequence of Gcaud2336.t1

>Gcaud2336.t1 ID=Gcaud2336.t1|Name=Gcaud2336.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=301bp
MAPSIPTSVAVHPLVLLGVIDHYNRVCEDAKKRAVGVLLGHVVKGKVSCT
NCFAVPFEEDEKDPSVWFLDHNFLENMMGMFRKVNARERIVGWYSTGPKI
HTGDLDINELIRSYCPNPVLVIVDVKPKDLGLPTEAYLSIEEAQKDGAVT
KTFEHLPSEIDATDAEEVGVGHLLRDIKDSSISNLTSDITAKSAALMSLG
DRLAELKTYLEEVAAMKLPVNNEIMYRMQDVFNLLPSLNVPKLVRGFHVK
NNDMMLVLLPRRRLLRQLPSLQQRMVPWLQNKLLEAFHVVPVFVVERLLV
*
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mRNA from alignment at NODE_48_length_65905_cov_4.503282:5494..6574-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2336.t1 ID=Gcaud2336.t1|Name=Gcaud2336.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1081bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:5494..6574- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCTCGATTCCAACATCCGTAGCGGTGCATCCACTGGTTTTACT
TGGAGTAATTGATCACTACAACAGAGTATGCGAAGATGCCAAAAAGTACG
TATTCATATCGCAGCTGCTCTTCGTGTTCTAGGCTCTGTCTGCGAGTGTT
CGATCGAAATCTCACAACTCGATATCCACATTTCTGCGCCCTTTTCATTT
CAGACGAGCGGTCGGTGTGCTATTAGGACATGTAGTTAAAGGAAAAGTCA
GTTGCACAAACTGTTTTGCCGTTCCTTTTGAGGAGGACGAAAAAGATCCA
TCAGTATGGTTTCTAGACCACAATTTCCTCGAGAACATGATGGGCATGTT
TCGAAAAGTTAACGCACGGGAACGGATAGTCGGCTGGTATTCGACAGGTC
CAAAGATCCATACCGGGGATCTTGACATCAATGAGCTTATCAGATCGTAT
TGTCCAAATCCTGTGCTCGTCATTGTTGACGTTAAGCCCAAAGATCTTGG
ATTGCCCACAGAAGCATACCTTTCTATCGAAGAAGCTCAAAAAGACGGTG
CAGTCACCAAGACGTTCGAACATCTCCCCAGTGAAATTGACGCAACCGAT
GCAGAGGAAGTGGGCGTTGGGCATTTATTGCGGGATATCAAAGACTCTTC
GATTTCGAATCTCACGAGCGACATCACCGCCAAATCTGCTGCTCTCATGT
CGCTTGGCGATCGTCTTGCTGAACTGAAGACTTATCTTGAGGAGGTGGCC
GCAATGAAGCTCCCAGTGAACAACGAGATCATGTATAGAATGCAAGATGT
GTTCAATTTGCTACCGAGTCTAAATGTGCCCAAACTGGTGAGAGGTTTCC
ATGTCAAGAACAATGACATGATGCTAGTACTGTACGTTTCCGCACTGATA
CGATCTATAATCGCGCTGCACGACCTTATTGACAACAAAATCATGTTGAA
GGCTACCGAGAAGAAGGCTGCTGAGGCAGCTGCCGTCACTTCAGCAGCGA
ATGGTACCATGGCTGCAAAATAAACTCCTCGAAGCCTTTCATGTTGTGCC
TGTTTTTGTAGTCGAGCGTCTGCTTGTATGA
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Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:5494..6574-

>Gcaud2336.t1 ID=Gcaud2336.t1|Name=Gcaud2336.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=903bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:5494..6574- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCTCGATTCCAACATCCGTAGCGGTGCATCCACTGGTTTTACT
TGGAGTAATTGATCACTACAACAGAGTATGCGAAGATGCCAAAAAACGAG
CGGTCGGTGTGCTATTAGGACATGTAGTTAAAGGAAAAGTCAGTTGCACA
AACTGTTTTGCCGTTCCTTTTGAGGAGGACGAAAAAGATCCATCAGTATG
GTTTCTAGACCACAATTTCCTCGAGAACATGATGGGCATGTTTCGAAAAG
TTAACGCACGGGAACGGATAGTCGGCTGGTATTCGACAGGTCCAAAGATC
CATACCGGGGATCTTGACATCAATGAGCTTATCAGATCGTATTGTCCAAA
TCCTGTGCTCGTCATTGTTGACGTTAAGCCCAAAGATCTTGGATTGCCCA
CAGAAGCATACCTTTCTATCGAAGAAGCTCAAAAAGACGGTGCAGTCACC
AAGACGTTCGAACATCTCCCCAGTGAAATTGACGCAACCGATGCAGAGGA
AGTGGGCGTTGGGCATTTATTGCGGGATATCAAAGACTCTTCGATTTCGA
ATCTCACGAGCGACATCACCGCCAAATCTGCTGCTCTCATGTCGCTTGGC
GATCGTCTTGCTGAACTGAAGACTTATCTTGAGGAGGTGGCCGCAATGAA
GCTCCCAGTGAACAACGAGATCATGTATAGAATGCAAGATGTGTTCAATT
TGCTACCGAGTCTAAATGTGCCCAAACTGGTGAGAGGTTTCCATGTCAAG
AACAATGACATGATGCTAGTACTGCTACCGAGAAGAAGGCTGCTGAGGCA
GCTGCCGTCACTTCAGCAGCGAATGGTACCATGGCTGCAAAATAAACTCC
TCGAAGCCTTTCATGTTGTGCCTGTTTTTGTAGTCGAGCGTCTGCTTGTA
TGA
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