Gcaud2335.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2335.t1
Unique Name	Gcaud2335.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	196

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:2364..3147 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702735.1
Preferred name	RPL20B
PFAMs	Ribosomal_L18A
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02882
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0000003,GO:0000902,GO:0000904,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0016049,GO:0019538,GO:0022414,GO:0022625,GO:0022626,GO:0030054,GO:0030154,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044706,GO:0048316,GO:0048468,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0051704,GO:0055044,GO:0060560,GO:0061458,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue	1.52e-58
EggNOG OGs	COG2157@1\|root,KOG0829@2759\|Eukaryota
Description	structural constituent of ribosome
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2335	Gcaud2335	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 2364..3147 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2335.t1	Gcaud2335.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 2364..3147 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2335.t1.stop1	Gcaud2335.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 2364..2366 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2335.t1.CDS1	Gcaud2335.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 2364..2466 -
Gcaud2335.t1.CDS2	Gcaud2335.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 2581..2620 -
Gcaud2335.t1.CDS3	Gcaud2335.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 2703..3147 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2335.t1.exon1	Gcaud2335.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 2364..2466 -
Gcaud2335.t1.exon2	Gcaud2335.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 2581..2620 -
Gcaud2335.t1.exon3	Gcaud2335.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 2703..3147 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2335.t1.intron1	Gcaud2335.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_48_length_65905_cov_4.503282 2467..2580 -
Gcaud2335.t1.intron2	Gcaud2335.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_48_length_65905_cov_4.503282 2621..2702 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2335.t1.start1	Gcaud2335.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 3145..3147 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:2364..3147-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:2364..3147-

mRNA sequence

>Gcaud2335.t1 ID=Gcaud2335.t1|Name=Gcaud2335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=196bp
MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEI
LAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYM
EMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQS
CRAFSVIALLNNDAFDGRNALNTFSPCVLESFTQNCTTVQARDTA*

spliced messenger RNA

>Gcaud2335.t1 ID=Gcaud2335.t1|Name=Gcaud2335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=588bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:2364..3147- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCAGGAAAAGGCGGATCCAAGCCAGATGAAGAAACCGCCGTGTA
CCGCATGAGAATCTTTGCTCCCAACCCGGTGGTGGCAAAGTCTCGTTTCT
GGTACTTCCTCAGAAAGCTCAAGCGCGTCAAGAAAGCAAACGGTGAAATT
CTCGCCGTGAACGAAATCCATGAGAAGGACATTTCCACCGTGAAGAACAT
CGGTGTTTGGTTGCGATACAAATCGCGTTCTGATACAGTCAACATGTACA
AAGAATATCGCGATGTGTCACTTACCGGCGCCGTTGAGCAGATGTACATG
GAAATGAGTGGACGTCACCGTGCGCGTTGGTCTTCTATTCAGGTGCTCAA
GGTGAAGGAGATTACCGAAGAAGACGTGCGCCGACCGCTTACCATGCAGT
TCCTCGATCCCGACCTCAAGTTTCCGCTTCCTCACACGCGCCCACAGTCT
TGTCGTGCGTTCAGTGTTATCGCGTTATTGAACAATGACGCTTTCGACGG
CCGCAATGCATTGAATACTTTTTCGCCTTGCGTTCTAGAGAGTTTCACTC
AAAACTGCACAACGGTGCAGGCGCGCGATACAGCGTAA

protein sequence of Gcaud2335.t1

>Gcaud2335.t1 ID=Gcaud2335.t1|Name=Gcaud2335.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=196bp
MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEI
LAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYM
EMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQS
CRAFSVIALLNNDAFDGRNALNTFSPCVLESFTQNCTTVQARDTA*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:2364..3147-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2335.t1 ID=Gcaud2335.t1|Name=Gcaud2335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=784bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:2364..3147- (Gracilaria caudata M_176_S67 male)
ATGGTTCCAGGAAAAGGCGGATCCAAGCCAGATGAAGAAACCGCCGTGTA
CCGCATGAGAATCTTTGCTCCCAACCCGGTGGTGGCAAAGTCTCGTTTCT
GGTACTTCCTCAGAAAGCTCAAGCGCGTCAAGAAAGCAAACGGTGAAATT
CTCGCCGTGAACGAAATCCATGAGAAGGACATTTCCACCGTGAAGAACAT
CGGTGTTTGGTTGCGATACAAATCGCGTTCTGATACAGTCAACATGTACA
AAGAATATCGCGATGTGTCACTTACCGGCGCCGTTGAGCAGATGTACATG
GAAATGAGTGGACGTCACCGTGCGCGTTGGTCTTCTATTCAGGTGCTCAA
GGTGAAGGAGATTACCGAAGAAGACGTGCGCCGACCGCTTACCATGCAGT
TCCTCGATCCCGACCTCAAGTTTCCGCTTCCTCACACGCGCCCACGTGCT
TCTACCAAGAGCAAACGCGCCACGTTTCTGGGCTCCAGGCCAAGCACATG
CACCTAAACCTCACTTGTGTGTTAAAGAGTCTTGTCGTGCGTTCAGTGTT
ATCGCGTTATTGAACAAGTACGTTCTTCATCTGTGAACAGCTCGGTAAAA
TCACTAAGAAGGTTATGTTTTGACTGCCGTTCTAATTCTTTTGTTGCTCT
GATCGTACAACCCCCTTTTACTTGTTGCAAGTGACGCTTTCGACGGCCGC
AATGCATTGAATACTTTTTCGCCTTGCGTTCTAGAGAGTTTCACTCAAAA
CTGCACAACGGTGCAGGCGCGCGATACAGCGTAA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:2364..3147-

>Gcaud2335.t1 ID=Gcaud2335.t1|Name=Gcaud2335.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=588bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:2364..3147- (Gracilaria caudata M_176_S67 male)
ATGGTTCCAGGAAAAGGCGGATCCAAGCCAGATGAAGAAACCGCCGTGTA
CCGCATGAGAATCTTTGCTCCCAACCCGGTGGTGGCAAAGTCTCGTTTCT
GGTACTTCCTCAGAAAGCTCAAGCGCGTCAAGAAAGCAAACGGTGAAATT
CTCGCCGTGAACGAAATCCATGAGAAGGACATTTCCACCGTGAAGAACAT
CGGTGTTTGGTTGCGATACAAATCGCGTTCTGATACAGTCAACATGTACA
AAGAATATCGCGATGTGTCACTTACCGGCGCCGTTGAGCAGATGTACATG
GAAATGAGTGGACGTCACCGTGCGCGTTGGTCTTCTATTCAGGTGCTCAA
GGTGAAGGAGATTACCGAAGAAGACGTGCGCCGACCGCTTACCATGCAGT
TCCTCGATCCCGACCTCAAGTTTCCGCTTCCTCACACGCGCCCACAGTCT
TGTCGTGCGTTCAGTGTTATCGCGTTATTGAACAATGACGCTTTCGACGG
CCGCAATGCATTGAATACTTTTTCGCCTTGCGTTCTAGAGAGTTTCACTC
AAAACTGCACAACGGTGCAGGCGCGCGATACAGCGTAA