Gcaud2334.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2334.t1
Unique Name	Gcaud2334.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:1309..2202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709226.1
Preferred name	MCAT
PFAMs	Acyl_transf_1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00004,RC00017,RC00039,RC02727
KEGG ko	ko:K00645,ko:K08074,ko:K12879
KEGG Reaction	R01626,R05804,R09085,R09086,R11671
KEGG Pathway	ko00010,ko00061,ko00333,ko01100,ko01110,ko01130,ko01200,ko01212,ko03013,ko03040,map00010,map00061,map00333,map01100,map01110,map01130,map01200,map01212,map03013,map03040
KEGG Module	M00001,M00082,M00405,M00406
GOs	GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009987,GO:0016042,GO:0016053,GO:0016054,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019752,GO:0030258,GO:0031974,GO:0032787,GO:0034440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072330,GO:1901575,GO:1901576
Evalue	1.66e-79
EggNOG OGs	COG0331@1\|root,KOG2926@2759\|Eukaryota
EC	2.3.1.39,2.7.1.147
Description	[acyl-carrier-protein] S-malonyltransferase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2334	Gcaud2334	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 1309..2202 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2334.t1.start1	Gcaud2334.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 1309..1311 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2334.t1.CDS1	Gcaud2334.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 1309..2202 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2334.t1.exon1	Gcaud2334.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 1309..2202 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2334.t1.stop1	Gcaud2334.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 2200..2202 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2334.t1	Gcaud2334.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 1309..2202 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:1309..2202+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:1309..2202+

mRNA sequence

>Gcaud2334.t1 ID=Gcaud2334.t1|Name=Gcaud2334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=298bp
MGASWRTCSDAAALVFQEADRLLNDDFPRPLSQYIFGGADAATLARTDVA
QPAIFVTSMACWAGLNELSLIQPDELAVTAGLSLGEYTALTIAGAISFQD
ALRLVTLRGRAMQDAADASDGGMVALIGADEATATQVVEATKQSDVLVAA
NFNAPGQVVLSGASAAIDRAATFASEKKKLRVAKLDVAGAFHSPLMEPAA
ERLAAALESTPINLPSVPVLSNVTGEPHQMGKVREMLVSQLTSSVRWAKC
CDYIRSTYSDASWTELAPGKTLSGIMRKIDRKIKVANLSEAPLEAQA*

spliced messenger RNA

>Gcaud2334.t1 ID=Gcaud2334.t1|Name=Gcaud2334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:1309..2202+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCTCCTGGCGCACATGTTCCGATGCCGCCGCACTGGTGTTTCA
AGAGGCAGATCGGCTGCTCAACGATGACTTCCCGCGCCCGTTGTCGCAGT
ACATTTTTGGCGGCGCTGACGCTGCTACGTTGGCGCGCACTGATGTTGCG
CAGCCGGCCATTTTTGTCACTTCGATGGCGTGCTGGGCGGGTCTTAATGA
ATTGTCACTTATACAACCCGATGAGCTTGCTGTCACAGCGGGCTTGAGTC
TTGGTGAGTATACTGCTTTGACCATAGCGGGTGCCATATCGTTTCAGGAT
GCGTTGCGATTGGTCACGTTGCGGGGAAGGGCCATGCAAGATGCTGCCGA
TGCCTCGGATGGTGGTATGGTTGCTCTTATCGGTGCGGATGAGGCCACTG
CTACACAAGTCGTAGAAGCAACCAAGCAATCTGATGTCTTGGTTGCTGCA
AACTTTAATGCACCAGGACAAGTAGTATTGTCTGGTGCGTCAGCTGCCAT
TGATCGAGCCGCCACCTTTGCTTCCGAGAAGAAGAAACTGCGTGTTGCCA
AGCTTGATGTGGCTGGCGCCTTCCACTCGCCGCTCATGGAGCCGGCAGCG
GAGCGACTAGCAGCCGCGCTAGAGTCTACCCCAATCAATCTTCCTTCTGT
ACCGGTGTTATCGAACGTTACGGGTGAACCCCATCAAATGGGAAAGGTCA
GAGAAATGTTGGTGAGCCAGCTCACCAGCTCTGTACGATGGGCAAAGTGC
TGTGATTATATTAGGAGCACATACAGCGATGCTTCCTGGACAGAACTTGC
TCCTGGCAAGACATTATCTGGTATCATGCGCAAGATTGACAGGAAGATCA
AGGTAGCCAATTTGTCCGAAGCTCCTCTTGAAGCACAAGCGTAG

protein sequence of Gcaud2334.t1

>Gcaud2334.t1 ID=Gcaud2334.t1|Name=Gcaud2334.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=298bp
MGASWRTCSDAAALVFQEADRLLNDDFPRPLSQYIFGGADAATLARTDVA
QPAIFVTSMACWAGLNELSLIQPDELAVTAGLSLGEYTALTIAGAISFQD
ALRLVTLRGRAMQDAADASDGGMVALIGADEATATQVVEATKQSDVLVAA
NFNAPGQVVLSGASAAIDRAATFASEKKKLRVAKLDVAGAFHSPLMEPAA
ERLAAALESTPINLPSVPVLSNVTGEPHQMGKVREMLVSQLTSSVRWAKC
CDYIRSTYSDASWTELAPGKTLSGIMRKIDRKIKVANLSEAPLEAQA*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:1309..2202+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2334.t1 ID=Gcaud2334.t1|Name=Gcaud2334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:1309..2202+ (Gracilaria caudata M_176_S67 male)
ATGGGCGCCTCCTGGCGCACATGTTCCGATGCCGCCGCACTGGTGTTTCA
AGAGGCAGATCGGCTGCTCAACGATGACTTCCCGCGCCCGTTGTCGCAGT
ACATTTTTGGCGGCGCTGACGCTGCTACGTTGGCGCGCACTGATGTTGCG
CAGCCGGCCATTTTTGTCACTTCGATGGCGTGCTGGGCGGGTCTTAATGA
ATTGTCACTTATACAACCCGATGAGCTTGCTGTCACAGCGGGCTTGAGTC
TTGGTGAGTATACTGCTTTGACCATAGCGGGTGCCATATCGTTTCAGGAT
GCGTTGCGATTGGTCACGTTGCGGGGAAGGGCCATGCAAGATGCTGCCGA
TGCCTCGGATGGTGGTATGGTTGCTCTTATCGGTGCGGATGAGGCCACTG
CTACACAAGTCGTAGAAGCAACCAAGCAATCTGATGTCTTGGTTGCTGCA
AACTTTAATGCACCAGGACAAGTAGTATTGTCTGGTGCGTCAGCTGCCAT
TGATCGAGCCGCCACCTTTGCTTCCGAGAAGAAGAAACTGCGTGTTGCCA
AGCTTGATGTGGCTGGCGCCTTCCACTCGCCGCTCATGGAGCCGGCAGCG
GAGCGACTAGCAGCCGCGCTAGAGTCTACCCCAATCAATCTTCCTTCTGT
ACCGGTGTTATCGAACGTTACGGGTGAACCCCATCAAATGGGAAAGGTCA
GAGAAATGTTGGTGAGCCAGCTCACCAGCTCTGTACGATGGGCAAAGTGC
TGTGATTATATTAGGAGCACATACAGCGATGCTTCCTGGACAGAACTTGC
TCCTGGCAAGACATTATCTGGTATCATGCGCAAGATTGACAGGAAGATCA
AGGTAGCCAATTTGTCCGAAGCTCCTCTTGAAGCACAAGCGTAG

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:1309..2202+

>Gcaud2334.t1 ID=Gcaud2334.t1|Name=Gcaud2334.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=894bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:1309..2202+ (Gracilaria caudata M_176_S67 male)
ATGGGCGCCTCCTGGCGCACATGTTCCGATGCCGCCGCACTGGTGTTTCA
AGAGGCAGATCGGCTGCTCAACGATGACTTCCCGCGCCCGTTGTCGCAGT
ACATTTTTGGCGGCGCTGACGCTGCTACGTTGGCGCGCACTGATGTTGCG
CAGCCGGCCATTTTTGTCACTTCGATGGCGTGCTGGGCGGGTCTTAATGA
ATTGTCACTTATACAACCCGATGAGCTTGCTGTCACAGCGGGCTTGAGTC
TTGGTGAGTATACTGCTTTGACCATAGCGGGTGCCATATCGTTTCAGGAT
GCGTTGCGATTGGTCACGTTGCGGGGAAGGGCCATGCAAGATGCTGCCGA
TGCCTCGGATGGTGGTATGGTTGCTCTTATCGGTGCGGATGAGGCCACTG
CTACACAAGTCGTAGAAGCAACCAAGCAATCTGATGTCTTGGTTGCTGCA
AACTTTAATGCACCAGGACAAGTAGTATTGTCTGGTGCGTCAGCTGCCAT
TGATCGAGCCGCCACCTTTGCTTCCGAGAAGAAGAAACTGCGTGTTGCCA
AGCTTGATGTGGCTGGCGCCTTCCACTCGCCGCTCATGGAGCCGGCAGCG
GAGCGACTAGCAGCCGCGCTAGAGTCTACCCCAATCAATCTTCCTTCTGT
ACCGGTGTTATCGAACGTTACGGGTGAACCCCATCAAATGGGAAAGGTCA
GAGAAATGTTGGTGAGCCAGCTCACCAGCTCTGTACGATGGGCAAAGTGC
TGTGATTATATTAGGAGCACATACAGCGATGCTTCCTGGACAGAACTTGC
TCCTGGCAAGACATTATCTGGTATCATGCGCAAGATTGACAGGAAGATCA
AGGTAGCCAATTTGTCCGAAGCTCCTCTTGAAGCACAAGCGTAG