Gcaud2331.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2331.t1
Unique Name	Gcaud2331.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1080_length_14143_cov_5.034515	contig	NODE_1080_length_14143_cov_5.034515:8000..9964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMQ173CT
Preferred name	TLK2
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08864
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0071704,GO:0140096,GO:1900368,GO:1901564
Evalue	2.36e-124
EggNOG OGs	KOG1151@1\|root,KOG1151@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	H
BRITE	ko00000,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2331	Gcaud2331	Gracilaria caudata M_176_S67 male	gene	NODE_1080_length_14143_cov_5.034515 8000..9964 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2331.t1.stop1	Gcaud2331.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1080_length_14143_cov_5.034515 8000..8002 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2331.t1.CDS1	Gcaud2331.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1080_length_14143_cov_5.034515 8000..9964 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2331.t1.exon1	Gcaud2331.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1080_length_14143_cov_5.034515 8000..9964 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2331.t1.start1	Gcaud2331.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1080_length_14143_cov_5.034515 9962..9964 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2331.t1	Gcaud2331.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1080_length_14143_cov_5.034515 8000..9964 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1080_length_14143_cov_5.034515:8000..9964-
coding sequence from alignment at NODE_1080_length_14143_cov_5.034515:8000..9964-

mRNA sequence

>Gcaud2331.t1 ID=Gcaud2331.t1|Name=Gcaud2331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=655bp
MTSTENLESVSAEDDQSSRRLRLLEARLSAAPANPPQRRIAPSTPPTLPR
TPPPTDEVEDVRSFSSDSMSRPATPAPANNNVRRKYAPAPKAKMKKRKRQ
SPAFKSGRLDEFFKPMSDSPPRKKDVPVEPSGSPRQDDYAYLRGMIERLK
RDNETLKKTVGDAENLVVQNEDLRTQIEIEMPSLREQLEEREIELKRERE
CAERMKGELRSVLVSLARHERREAARKAADDGERLGKTVVQRTRTSIHES
WQDGQQWKQIQNDLEVIQSEKENLEKRRKELTKRRAQLQKKETPQEGEMP
PPPPVHKTNVPFEETVEYHQEMEDVCRVQMQVLKKQETVLFDTRQSLLKE
RDILVREMRRQSDERDSRFSQFPVLSERYQLLNLLGRGGFSEVFKAFDLR
DGAYVACKIHQLASNWKEEKKRSFIRHAMREYDIHKSLKHPRVVQLIDIF
EIDENTFCTVLEYCEGSDLDSHLRAQKTLPEKEARSIIAQVCSGLLYLAE
QERRIIHYDLKPGNILLHKGEVQITDFGLSKIMTEGSSTVDVMELTSQGA
GTMWYLPPECFDTGGNARISVKVDVWSAGVILFQMLYGRKPFGHDQTQEK
MFREKTVQHQELQFPQKPQVSDVAKDFMTKCLTRKASARPDVRQALMHPF
LRKR*

spliced messenger RNA

>Gcaud2331.t1 ID=Gcaud2331.t1|Name=Gcaud2331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:8000..9964- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGCACGGAGAATCTTGAATCCGTATCGGCCGAAGATGATCAATC
TTCCCGTCGCCTCCGGCTTCTCGAGGCTCGCTTAAGTGCTGCACCAGCCA
ACCCACCACAAAGGCGTATCGCCCCTAGTACGCCACCAACTCTACCTCGG
ACGCCACCTCCAACTGATGAGGTAGAGGATGTGCGCAGTTTTTCATCCGA
TTCCATGTCACGCCCAGCAACCCCTGCACCCGCTAACAACAATGTGCGCA
GGAAATATGCACCGGCTCCGAAAGCAAAAATGAAAAAACGCAAGCGACAA
TCACCAGCCTTCAAATCTGGCAGACTAGACGAGTTCTTCAAGCCAATGAG
CGACTCCCCCCCACGAAAGAAGGATGTTCCCGTTGAACCAAGCGGATCCC
CAAGACAAGATGATTACGCATATTTGCGGGGCATGATTGAGCGCTTAAAG
AGAGATAACGAAACTCTCAAAAAGACTGTAGGTGATGCTGAGAACTTAGT
AGTCCAGAATGAGGATTTGCGAACTCAGATTGAGATCGAGATGCCCTCTT
TACGAGAACAGCTCGAGGAGCGCGAGATAGAGCTAAAACGTGAACGCGAA
TGTGCTGAACGCATGAAGGGAGAACTGCGATCGGTTTTAGTGTCTTTGGC
AAGACACGAACGGCGAGAAGCTGCGCGGAAAGCCGCCGATGATGGTGAAC
GTCTAGGAAAAACAGTTGTCCAGCGCACTAGAACTTCGATTCACGAGTCT
TGGCAAGATGGTCAACAGTGGAAACAGATCCAGAATGACTTGGAGGTGAT
ACAAAGTGAAAAGGAAAATTTGGAGAAGAGAAGAAAAGAATTGACGAAAA
GGCGAGCGCAGTTGCAGAAGAAAGAAACTCCTCAGGAAGGAGAAATGCCT
CCACCTCCTCCTGTACACAAGACAAATGTTCCTTTTGAAGAAACTGTTGA
GTACCATCAGGAGATGGAGGACGTGTGCCGTGTGCAGATGCAGGTTCTCA
AGAAGCAAGAGACCGTTTTGTTTGACACGAGGCAAAGCCTTTTGAAGGAA
AGAGACATCCTTGTTCGTGAGATGAGACGACAGTCGGATGAACGAGACTC
GAGGTTTTCACAATTTCCCGTACTTAGTGAACGATACCAGCTGTTAAATC
TGCTTGGGAGAGGCGGGTTCAGCGAGGTGTTCAAAGCCTTTGATTTACGT
GATGGAGCATATGTCGCCTGCAAAATTCACCAGCTTGCAAGCAACTGGAA
AGAGGAAAAGAAGCGGAGCTTCATAAGACACGCAATGCGGGAATATGATA
TACACAAGTCTCTAAAGCACCCAAGGGTGGTCCAGCTCATTGATATATTC
GAAATTGATGAGAACACTTTTTGTACCGTGTTGGAATATTGCGAGGGTAG
TGACCTTGATTCGCACCTACGCGCCCAAAAAACTCTCCCGGAGAAAGAAG
CTCGGTCAATCATTGCACAAGTATGTTCAGGTTTGCTATATCTCGCAGAG
CAAGAACGCCGAATTATTCATTACGATCTCAAACCAGGAAACATCCTGTT
GCACAAAGGAGAGGTTCAAATCACAGACTTTGGTCTCTCCAAGATTATGA
CCGAGGGCAGCTCTACGGTGGACGTCATGGAGCTGACCTCCCAAGGGGCT
GGGACGATGTGGTATCTTCCTCCTGAATGCTTTGATACAGGTGGAAATGC
TAGGATCAGTGTAAAAGTTGACGTCTGGAGTGCGGGGGTAATCTTGTTTC
AAATGTTATACGGAAGAAAGCCATTCGGTCATGATCAAACTCAAGAAAAG
ATGTTCCGCGAGAAGACTGTACAGCATCAGGAACTGCAATTCCCACAAAA
GCCTCAAGTTTCGGATGTAGCAAAAGACTTCATGACGAAGTGCCTAACAC
GGAAAGCATCAGCTAGACCAGATGTTCGGCAAGCCCTCATGCATCCTTTC
TTGAGGAAGAGATAA

protein sequence of Gcaud2331.t1

>Gcaud2331.t1 ID=Gcaud2331.t1|Name=Gcaud2331.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=655bp
MTSTENLESVSAEDDQSSRRLRLLEARLSAAPANPPQRRIAPSTPPTLPR
TPPPTDEVEDVRSFSSDSMSRPATPAPANNNVRRKYAPAPKAKMKKRKRQ
SPAFKSGRLDEFFKPMSDSPPRKKDVPVEPSGSPRQDDYAYLRGMIERLK
RDNETLKKTVGDAENLVVQNEDLRTQIEIEMPSLREQLEEREIELKRERE
CAERMKGELRSVLVSLARHERREAARKAADDGERLGKTVVQRTRTSIHES
WQDGQQWKQIQNDLEVIQSEKENLEKRRKELTKRRAQLQKKETPQEGEMP
PPPPVHKTNVPFEETVEYHQEMEDVCRVQMQVLKKQETVLFDTRQSLLKE
RDILVREMRRQSDERDSRFSQFPVLSERYQLLNLLGRGGFSEVFKAFDLR
DGAYVACKIHQLASNWKEEKKRSFIRHAMREYDIHKSLKHPRVVQLIDIF
EIDENTFCTVLEYCEGSDLDSHLRAQKTLPEKEARSIIAQVCSGLLYLAE
QERRIIHYDLKPGNILLHKGEVQITDFGLSKIMTEGSSTVDVMELTSQGA
GTMWYLPPECFDTGGNARISVKVDVWSAGVILFQMLYGRKPFGHDQTQEK
MFREKTVQHQELQFPQKPQVSDVAKDFMTKCLTRKASARPDVRQALMHPF
LRKR*

mRNA from alignment at NODE_1080_length_14143_cov_5.034515:8000..9964-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2331.t1 ID=Gcaud2331.t1|Name=Gcaud2331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:8000..9964- (Gracilaria caudata M_176_S67 male)
ATGACAAGCACGGAGAATCTTGAATCCGTATCGGCCGAAGATGATCAATC
TTCCCGTCGCCTCCGGCTTCTCGAGGCTCGCTTAAGTGCTGCACCAGCCA
ACCCACCACAAAGGCGTATCGCCCCTAGTACGCCACCAACTCTACCTCGG
ACGCCACCTCCAACTGATGAGGTAGAGGATGTGCGCAGTTTTTCATCCGA
TTCCATGTCACGCCCAGCAACCCCTGCACCCGCTAACAACAATGTGCGCA
GGAAATATGCACCGGCTCCGAAAGCAAAAATGAAAAAACGCAAGCGACAA
TCACCAGCCTTCAAATCTGGCAGACTAGACGAGTTCTTCAAGCCAATGAG
CGACTCCCCCCCACGAAAGAAGGATGTTCCCGTTGAACCAAGCGGATCCC
CAAGACAAGATGATTACGCATATTTGCGGGGCATGATTGAGCGCTTAAAG
AGAGATAACGAAACTCTCAAAAAGACTGTAGGTGATGCTGAGAACTTAGT
AGTCCAGAATGAGGATTTGCGAACTCAGATTGAGATCGAGATGCCCTCTT
TACGAGAACAGCTCGAGGAGCGCGAGATAGAGCTAAAACGTGAACGCGAA
TGTGCTGAACGCATGAAGGGAGAACTGCGATCGGTTTTAGTGTCTTTGGC
AAGACACGAACGGCGAGAAGCTGCGCGGAAAGCCGCCGATGATGGTGAAC
GTCTAGGAAAAACAGTTGTCCAGCGCACTAGAACTTCGATTCACGAGTCT
TGGCAAGATGGTCAACAGTGGAAACAGATCCAGAATGACTTGGAGGTGAT
ACAAAGTGAAAAGGAAAATTTGGAGAAGAGAAGAAAAGAATTGACGAAAA
GGCGAGCGCAGTTGCAGAAGAAAGAAACTCCTCAGGAAGGAGAAATGCCT
CCACCTCCTCCTGTACACAAGACAAATGTTCCTTTTGAAGAAACTGTTGA
GTACCATCAGGAGATGGAGGACGTGTGCCGTGTGCAGATGCAGGTTCTCA
AGAAGCAAGAGACCGTTTTGTTTGACACGAGGCAAAGCCTTTTGAAGGAA
AGAGACATCCTTGTTCGTGAGATGAGACGACAGTCGGATGAACGAGACTC
GAGGTTTTCACAATTTCCCGTACTTAGTGAACGATACCAGCTGTTAAATC
TGCTTGGGAGAGGCGGGTTCAGCGAGGTGTTCAAAGCCTTTGATTTACGT
GATGGAGCATATGTCGCCTGCAAAATTCACCAGCTTGCAAGCAACTGGAA
AGAGGAAAAGAAGCGGAGCTTCATAAGACACGCAATGCGGGAATATGATA
TACACAAGTCTCTAAAGCACCCAAGGGTGGTCCAGCTCATTGATATATTC
GAAATTGATGAGAACACTTTTTGTACCGTGTTGGAATATTGCGAGGGTAG
TGACCTTGATTCGCACCTACGCGCCCAAAAAACTCTCCCGGAGAAAGAAG
CTCGGTCAATCATTGCACAAGTATGTTCAGGTTTGCTATATCTCGCAGAG
CAAGAACGCCGAATTATTCATTACGATCTCAAACCAGGAAACATCCTGTT
GCACAAAGGAGAGGTTCAAATCACAGACTTTGGTCTCTCCAAGATTATGA
CCGAGGGCAGCTCTACGGTGGACGTCATGGAGCTGACCTCCCAAGGGGCT
GGGACGATGTGGTATCTTCCTCCTGAATGCTTTGATACAGGTGGAAATGC
TAGGATCAGTGTAAAAGTTGACGTCTGGAGTGCGGGGGTAATCTTGTTTC
AAATGTTATACGGAAGAAAGCCATTCGGTCATGATCAAACTCAAGAAAAG
ATGTTCCGCGAGAAGACTGTACAGCATCAGGAACTGCAATTCCCACAAAA
GCCTCAAGTTTCGGATGTAGCAAAAGACTTCATGACGAAGTGCCTAACAC
GGAAAGCATCAGCTAGACCAGATGTTCGGCAAGCCCTCATGCATCCTTTC
TTGAGGAAGAGATAA

Coding sequence (CDS) from alignment at NODE_1080_length_14143_cov_5.034515:8000..9964-

>Gcaud2331.t1 ID=Gcaud2331.t1|Name=Gcaud2331.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1965bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:8000..9964- (Gracilaria caudata M_176_S67 male)
ATGACAAGCACGGAGAATCTTGAATCCGTATCGGCCGAAGATGATCAATC
TTCCCGTCGCCTCCGGCTTCTCGAGGCTCGCTTAAGTGCTGCACCAGCCA
ACCCACCACAAAGGCGTATCGCCCCTAGTACGCCACCAACTCTACCTCGG
ACGCCACCTCCAACTGATGAGGTAGAGGATGTGCGCAGTTTTTCATCCGA
TTCCATGTCACGCCCAGCAACCCCTGCACCCGCTAACAACAATGTGCGCA
GGAAATATGCACCGGCTCCGAAAGCAAAAATGAAAAAACGCAAGCGACAA
TCACCAGCCTTCAAATCTGGCAGACTAGACGAGTTCTTCAAGCCAATGAG
CGACTCCCCCCCACGAAAGAAGGATGTTCCCGTTGAACCAAGCGGATCCC
CAAGACAAGATGATTACGCATATTTGCGGGGCATGATTGAGCGCTTAAAG
AGAGATAACGAAACTCTCAAAAAGACTGTAGGTGATGCTGAGAACTTAGT
AGTCCAGAATGAGGATTTGCGAACTCAGATTGAGATCGAGATGCCCTCTT
TACGAGAACAGCTCGAGGAGCGCGAGATAGAGCTAAAACGTGAACGCGAA
TGTGCTGAACGCATGAAGGGAGAACTGCGATCGGTTTTAGTGTCTTTGGC
AAGACACGAACGGCGAGAAGCTGCGCGGAAAGCCGCCGATGATGGTGAAC
GTCTAGGAAAAACAGTTGTCCAGCGCACTAGAACTTCGATTCACGAGTCT
TGGCAAGATGGTCAACAGTGGAAACAGATCCAGAATGACTTGGAGGTGAT
ACAAAGTGAAAAGGAAAATTTGGAGAAGAGAAGAAAAGAATTGACGAAAA
GGCGAGCGCAGTTGCAGAAGAAAGAAACTCCTCAGGAAGGAGAAATGCCT
CCACCTCCTCCTGTACACAAGACAAATGTTCCTTTTGAAGAAACTGTTGA
GTACCATCAGGAGATGGAGGACGTGTGCCGTGTGCAGATGCAGGTTCTCA
AGAAGCAAGAGACCGTTTTGTTTGACACGAGGCAAAGCCTTTTGAAGGAA
AGAGACATCCTTGTTCGTGAGATGAGACGACAGTCGGATGAACGAGACTC
GAGGTTTTCACAATTTCCCGTACTTAGTGAACGATACCAGCTGTTAAATC
TGCTTGGGAGAGGCGGGTTCAGCGAGGTGTTCAAAGCCTTTGATTTACGT
GATGGAGCATATGTCGCCTGCAAAATTCACCAGCTTGCAAGCAACTGGAA
AGAGGAAAAGAAGCGGAGCTTCATAAGACACGCAATGCGGGAATATGATA
TACACAAGTCTCTAAAGCACCCAAGGGTGGTCCAGCTCATTGATATATTC
GAAATTGATGAGAACACTTTTTGTACCGTGTTGGAATATTGCGAGGGTAG
TGACCTTGATTCGCACCTACGCGCCCAAAAAACTCTCCCGGAGAAAGAAG
CTCGGTCAATCATTGCACAAGTATGTTCAGGTTTGCTATATCTCGCAGAG
CAAGAACGCCGAATTATTCATTACGATCTCAAACCAGGAAACATCCTGTT
GCACAAAGGAGAGGTTCAAATCACAGACTTTGGTCTCTCCAAGATTATGA
CCGAGGGCAGCTCTACGGTGGACGTCATGGAGCTGACCTCCCAAGGGGCT
GGGACGATGTGGTATCTTCCTCCTGAATGCTTTGATACAGGTGGAAATGC
TAGGATCAGTGTAAAAGTTGACGTCTGGAGTGCGGGGGTAATCTTGTTTC
AAATGTTATACGGAAGAAAGCCATTCGGTCATGATCAAACTCAAGAAAAG
ATGTTCCGCGAGAAGACTGTACAGCATCAGGAACTGCAATTCCCACAAAA
GCCTCAAGTTTCGGATGTAGCAAAAGACTTCATGACGAAGTGCCTAACAC
GGAAAGCATCAGCTAGACCAGATGTTCGGCAAGCCCTCATGCATCCTTTC
TTGAGGAAGAGATAA