Gcaud2329.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2329.t1
Unique Name	Gcaud2329.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1080_length_14143_cov_5.034515	contig	NODE_1080_length_14143_cov_5.034515:4569..5585 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29760.VIT_14s0068g00780.t01
PFAMs	Mg_trans_NIPA
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
Evalue	5.3e-24
EggNOG OGs	KOG2922@1\|root,KOG2922@2759\|Eukaryota,37P3B@33090\|Viridiplantae,3GFNA@35493\|Streptophyta
Description	Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2329	Gcaud2329	Gracilaria caudata M_176_S67 male	gene	NODE_1080_length_14143_cov_5.034515 4569..5585 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2329.t1.stop1	Gcaud2329.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1080_length_14143_cov_5.034515 4569..4571 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2329.t1.CDS1	Gcaud2329.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1080_length_14143_cov_5.034515 4569..5585 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2329.t1.exon1	Gcaud2329.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1080_length_14143_cov_5.034515 4569..5585 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2329.t1.start1	Gcaud2329.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1080_length_14143_cov_5.034515 5583..5585 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2329.t1	Gcaud2329.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1080_length_14143_cov_5.034515 4569..5585 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1080_length_14143_cov_5.034515:4569..5585-
coding sequence from alignment at NODE_1080_length_14143_cov_5.034515:4569..5585-

mRNA sequence

>Gcaud2329.t1 ID=Gcaud2329.t1|Name=Gcaud2329.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp
MQMSVAGVQTLPDLTPMAEPWSIGLLLAIAGYTMCGAGMNLIKLSHIKRG
TATGSSVLRSTPFNRRSSPAHATLLWFCGYGVNSLGGMLNTAGLRFAAQS
LIAPLSSMALVVNAVFATFVLGERLGLRDVLPMSLIAFGNIIAVASANHS
EQRGLTLIEISQLFRRSSFQLYLITVLLLASLLMVIRGRLRRRIRKSGGD
EMASPTLVAYAGLCHAAAAAMLSVNTVFLSKASLLALTDGFHNAFKPQFL
ALILTWLSLVSFWIYTLNRLLASHDILFIVPAIEVLWSLCSMIGGGIFFD
EYSSMKVSRRVSFAVGVIINLTGVFILSRRGEKGSKLG*

spliced messenger RNA

>Gcaud2329.t1 ID=Gcaud2329.t1|Name=Gcaud2329.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:4569..5585- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGATGAGCGTCGCTGGCGTGCAAACATTACCCGACCTCACGCCTAT
GGCTGAACCATGGTCAATTGGTCTCTTACTTGCAATAGCCGGCTATACCA
TGTGCGGTGCGGGTATGAATCTTATCAAACTCTCTCACATCAAGCGCGGA
ACTGCCACCGGTAGCTCAGTGCTTCGTTCAACCCCGTTTAACCGTCGTTC
GTCACCAGCGCACGCCACTTTGCTATGGTTCTGCGGCTATGGTGTAAATT
CTCTGGGTGGAATGCTTAACACAGCCGGTTTACGCTTTGCTGCACAGAGT
TTGATTGCCCCGCTGAGTAGTATGGCTCTCGTCGTCAACGCTGTGTTTGC
CACCTTCGTGCTAGGCGAACGTCTTGGTCTCCGTGATGTGCTGCCCATGT
CGCTTATCGCCTTTGGCAATATCATAGCCGTTGCCAGCGCCAATCATTCC
GAACAGCGCGGACTCACATTAATAGAGATCTCTCAGCTGTTCCGTCGCTC
TTCATTTCAACTTTATCTTATCACTGTTCTCTTATTGGCATCATTGCTAA
TGGTTATCAGAGGGAGGCTTCGCCGCAGAATACGAAAGTCCGGCGGTGAT
GAAATGGCCAGTCCTACTCTGGTTGCGTATGCGGGACTGTGTCATGCTGC
TGCCGCAGCCATGCTTAGCGTCAATACCGTGTTCTTGTCAAAGGCCAGTC
TATTGGCTCTGACAGACGGTTTCCATAATGCGTTCAAGCCACAGTTCTTG
GCGCTCATTCTAACGTGGCTGTCGCTGGTTTCCTTTTGGATTTATACCTT
GAATCGCTTACTGGCTAGTCACGACATTCTTTTCATCGTACCTGCTATTG
AAGTTCTGTGGAGTCTGTGCTCCATGATAGGGGGTGGAATCTTCTTTGAC
GAGTATTCTTCTATGAAAGTGTCTAGAAGAGTCAGCTTCGCCGTTGGCGT
GATTATTAACCTAACAGGAGTGTTCATATTGTCGCGAAGAGGTGAGAAGG
GAAGCAAGCTTGGATGA

protein sequence of Gcaud2329.t1

>Gcaud2329.t1 ID=Gcaud2329.t1|Name=Gcaud2329.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=339bp
MQMSVAGVQTLPDLTPMAEPWSIGLLLAIAGYTMCGAGMNLIKLSHIKRG
TATGSSVLRSTPFNRRSSPAHATLLWFCGYGVNSLGGMLNTAGLRFAAQS
LIAPLSSMALVVNAVFATFVLGERLGLRDVLPMSLIAFGNIIAVASANHS
EQRGLTLIEISQLFRRSSFQLYLITVLLLASLLMVIRGRLRRRIRKSGGD
EMASPTLVAYAGLCHAAAAAMLSVNTVFLSKASLLALTDGFHNAFKPQFL
ALILTWLSLVSFWIYTLNRLLASHDILFIVPAIEVLWSLCSMIGGGIFFD
EYSSMKVSRRVSFAVGVIINLTGVFILSRRGEKGSKLG*

mRNA from alignment at NODE_1080_length_14143_cov_5.034515:4569..5585-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2329.t1 ID=Gcaud2329.t1|Name=Gcaud2329.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:4569..5585- (Gracilaria caudata M_176_S67 male)
ATGCAGATGAGCGTCGCTGGCGTGCAAACATTACCCGACCTCACGCCTAT
GGCTGAACCATGGTCAATTGGTCTCTTACTTGCAATAGCCGGCTATACCA
TGTGCGGTGCGGGTATGAATCTTATCAAACTCTCTCACATCAAGCGCGGA
ACTGCCACCGGTAGCTCAGTGCTTCGTTCAACCCCGTTTAACCGTCGTTC
GTCACCAGCGCACGCCACTTTGCTATGGTTCTGCGGCTATGGTGTAAATT
CTCTGGGTGGAATGCTTAACACAGCCGGTTTACGCTTTGCTGCACAGAGT
TTGATTGCCCCGCTGAGTAGTATGGCTCTCGTCGTCAACGCTGTGTTTGC
CACCTTCGTGCTAGGCGAACGTCTTGGTCTCCGTGATGTGCTGCCCATGT
CGCTTATCGCCTTTGGCAATATCATAGCCGTTGCCAGCGCCAATCATTCC
GAACAGCGCGGACTCACATTAATAGAGATCTCTCAGCTGTTCCGTCGCTC
TTCATTTCAACTTTATCTTATCACTGTTCTCTTATTGGCATCATTGCTAA
TGGTTATCAGAGGGAGGCTTCGCCGCAGAATACGAAAGTCCGGCGGTGAT
GAAATGGCCAGTCCTACTCTGGTTGCGTATGCGGGACTGTGTCATGCTGC
TGCCGCAGCCATGCTTAGCGTCAATACCGTGTTCTTGTCAAAGGCCAGTC
TATTGGCTCTGACAGACGGTTTCCATAATGCGTTCAAGCCACAGTTCTTG
GCGCTCATTCTAACGTGGCTGTCGCTGGTTTCCTTTTGGATTTATACCTT
GAATCGCTTACTGGCTAGTCACGACATTCTTTTCATCGTACCTGCTATTG
AAGTTCTGTGGAGTCTGTGCTCCATGATAGGGGGTGGAATCTTCTTTGAC
GAGTATTCTTCTATGAAAGTGTCTAGAAGAGTCAGCTTCGCCGTTGGCGT
GATTATTAACCTAACAGGAGTGTTCATATTGTCGCGAAGAGGTGAGAAGG
GAAGCAAGCTTGGATGA

Coding sequence (CDS) from alignment at NODE_1080_length_14143_cov_5.034515:4569..5585-

>Gcaud2329.t1 ID=Gcaud2329.t1|Name=Gcaud2329.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1017bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:4569..5585- (Gracilaria caudata M_176_S67 male)
ATGCAGATGAGCGTCGCTGGCGTGCAAACATTACCCGACCTCACGCCTAT
GGCTGAACCATGGTCAATTGGTCTCTTACTTGCAATAGCCGGCTATACCA
TGTGCGGTGCGGGTATGAATCTTATCAAACTCTCTCACATCAAGCGCGGA
ACTGCCACCGGTAGCTCAGTGCTTCGTTCAACCCCGTTTAACCGTCGTTC
GTCACCAGCGCACGCCACTTTGCTATGGTTCTGCGGCTATGGTGTAAATT
CTCTGGGTGGAATGCTTAACACAGCCGGTTTACGCTTTGCTGCACAGAGT
TTGATTGCCCCGCTGAGTAGTATGGCTCTCGTCGTCAACGCTGTGTTTGC
CACCTTCGTGCTAGGCGAACGTCTTGGTCTCCGTGATGTGCTGCCCATGT
CGCTTATCGCCTTTGGCAATATCATAGCCGTTGCCAGCGCCAATCATTCC
GAACAGCGCGGACTCACATTAATAGAGATCTCTCAGCTGTTCCGTCGCTC
TTCATTTCAACTTTATCTTATCACTGTTCTCTTATTGGCATCATTGCTAA
TGGTTATCAGAGGGAGGCTTCGCCGCAGAATACGAAAGTCCGGCGGTGAT
GAAATGGCCAGTCCTACTCTGGTTGCGTATGCGGGACTGTGTCATGCTGC
TGCCGCAGCCATGCTTAGCGTCAATACCGTGTTCTTGTCAAAGGCCAGTC
TATTGGCTCTGACAGACGGTTTCCATAATGCGTTCAAGCCACAGTTCTTG
GCGCTCATTCTAACGTGGCTGTCGCTGGTTTCCTTTTGGATTTATACCTT
GAATCGCTTACTGGCTAGTCACGACATTCTTTTCATCGTACCTGCTATTG
AAGTTCTGTGGAGTCTGTGCTCCATGATAGGGGGTGGAATCTTCTTTGAC
GAGTATTCTTCTATGAAAGTGTCTAGAAGAGTCAGCTTCGCCGTTGGCGT
GATTATTAACCTAACAGGAGTGTTCATATTGTCGCGAAGAGGTGAGAAGG
GAAGCAAGCTTGGATGA