Gcaud2327.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2327.t1
Unique NameGcaud2327.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1080_length_14143_cov_5.034515contigNODE_1080_length_14143_cov_5.034515:197..1800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_007_00814.1
Preferred nameTNPO1
PFAMsHEAT,HEAT_EZ,IBN_N
Max annot lvl35493|Streptophyta
KEGG koko:K18752
KEGG TC1.I.1
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031047,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035194,GO:0035195,GO:0035280,GO:0040029,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0050789,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070922,GO:0071702,GO:0071705,GO:0071826,GO:0071840,GO:0072594
Evalue9.74e-69
EggNOG OGsKOG2023@1|root,KOG2023@2759|Eukaryota,37MMU@33090|Viridiplantae,3GB99@35493|Streptophyta
Descriptionattrn1,trn1
COG categoryUY
BRITEko00000,ko03009,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2327Gcaud2327Gracilaria caudata M_176_S67 malegeneNODE_1080_length_14143_cov_5.034515 197..1800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2327.t1Gcaud2327.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1080_length_14143_cov_5.034515 197..1800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2327.t1.CDS1Gcaud2327.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1080_length_14143_cov_5.034515 197..919 -
Gcaud2327.t1.CDS2Gcaud2327.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1080_length_14143_cov_5.034515 994..1800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2327.t1.exon1Gcaud2327.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1080_length_14143_cov_5.034515 197..919 -
Gcaud2327.t1.exon2Gcaud2327.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1080_length_14143_cov_5.034515 994..1800 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2327.t1.intron1Gcaud2327.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1080_length_14143_cov_5.034515 920..993 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2327.t1.start1Gcaud2327.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1080_length_14143_cov_5.034515 1798..1800 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2327.t1 ID=Gcaud2327.t1|Name=Gcaud2327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp
MNTSHLALASTTATSTDHTMCSAPLTASNEQQQTIEWTPAPEKLQAIANL
LRESTSAYTKVQQHVYDQLHQYSSVRDFNNYLVYILAHGYNNSEAAYQQV
DAVRQAAGLVLKNNIRPLYNTLHPHSRQYINAHLLAAIGDNSYQIRAVAA
TCISTIVKSMQALVAYSGLTTTLIQSMDSDRLTYIEGALTVLSVLAEDVP
LVLNHDVSRPLDALVPKLILLCVHQSEAIRAKSVQILNHLILGLPTALRD
HVDAFIRTLFSIAEDSSAQKCKEFMLASSKHHDELIAREACEFWILVARV
QGGKEVLRSYLPRLVPIILDNMVYSKDEVELYNELNKSDENVPDSEDDIR
PRFHQPRFVQSSATGMNGDIPAMNAELHWASENGSQAGPVSGNGFTSGSN
GSSTGGYDSDEDGGYESSDLDDFRDDSEWTLRKCSASSIDMFSHIFGEEL
LEYLLPRLEGKVADEAHWEQRECGILALGAIAQGCYHGMLPVLPRVASFL
FGLTGDQHNM
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spliced messenger RNA

>Gcaud2327.t1 ID=Gcaud2327.t1|Name=Gcaud2327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:197..1800- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACCTCCCATCTTGCCCTGGCTTCAACAACAGCAACTTCCACAGA
TCACACCATGTGTTCGGCGCCATTGACCGCATCTAATGAACAACAGCAAA
CAATAGAATGGACTCCAGCTCCAGAAAAACTCCAAGCGATCGCCAACTTA
CTTCGAGAATCTACCTCAGCTTATACAAAGGTGCAACAGCATGTTTACGA
CCAACTACATCAGTACTCCTCTGTTCGTGATTTCAACAACTACTTAGTTT
ACATCCTAGCACATGGGTACAACAATTCTGAAGCTGCCTACCAACAAGTA
GACGCCGTAAGACAGGCAGCTGGATTGGTATTGAAGAATAACATTCGACC
TCTTTACAACACTTTACATCCTCACAGCAGGCAATATATCAATGCACATT
TACTCGCTGCAATAGGTGATAATTCGTACCAAATCAGGGCCGTAGCAGCT
ACATGTATTTCTACTATTGTCAAGTCTATGCAAGCATTAGTCGCCTACTC
TGGATTAACCACAACTCTCATTCAATCCATGGACTCTGATCGTCTCACGT
ACATAGAAGGCGCCCTTACAGTTCTTTCTGTTCTCGCTGAAGACGTCCCT
CTCGTTCTCAATCACGACGTTTCACGTCCGTTAGATGCGCTCGTTCCAAA
ACTAATCCTCTTATGCGTACACCAATCCGAAGCTATTCGAGCAAAATCGG
TTCAGATCTTGAATCACCTTATACTCGGTCTACCCACTGCTCTTCGCGAT
CACGTAGATGCTTTCATCCGAACTTTGTTCTCCATTGCAGAGGACTCCTC
GGCCCAAAAATGTAAGGAGTTCATGCTAGCCTCAAGCAAACATCATGACG
AACTTATCGCCCGCGAAGCATGTGAGTTTTGGATTTTAGTGGCAAGGGTG
CAAGGTGGTAAGGAGGTTCTTAGATCGTATCTCCCAAGACTAGTGCCAAT
CATTCTTGACAATATGGTGTACTCAAAAGATGAGGTCGAGTTGTACAATG
AACTAAACAAATCGGATGAGAATGTGCCAGATAGTGAGGATGATATCAGG
CCTCGCTTTCATCAGCCCCGTTTTGTTCAGTCCAGTGCAACTGGGATGAA
TGGGGATATCCCCGCCATGAATGCTGAACTTCATTGGGCATCTGAAAACG
GTAGTCAGGCGGGGCCTGTCAGTGGAAATGGGTTTACAAGCGGTTCAAAT
GGATCAAGTACAGGTGGATATGACTCTGATGAAGATGGAGGTTATGAGTC
CTCAGATCTCGACGACTTTCGGGATGACTCTGAGTGGACTCTCAGGAAAT
GTTCTGCAAGTTCGATAGATATGTTTTCACATATATTTGGAGAAGAACTC
CTGGAATATCTCCTGCCCAGACTTGAAGGCAAAGTAGCTGATGAGGCCCA
CTGGGAACAAAGAGAGTGTGGCATTCTGGCGCTTGGGGCGATCGCACAGG
GTTGTTATCACGGCATGCTACCCGTACTACCACGCGTTGCCTCGTTTCTC
TTCGGCCTTACCGGAGATCAACATAATATG
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protein sequence of Gcaud2327.t1

>Gcaud2327.t1 ID=Gcaud2327.t1|Name=Gcaud2327.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=510bp
MNTSHLALASTTATSTDHTMCSAPLTASNEQQQTIEWTPAPEKLQAIANL
LRESTSAYTKVQQHVYDQLHQYSSVRDFNNYLVYILAHGYNNSEAAYQQV
DAVRQAAGLVLKNNIRPLYNTLHPHSRQYINAHLLAAIGDNSYQIRAVAA
TCISTIVKSMQALVAYSGLTTTLIQSMDSDRLTYIEGALTVLSVLAEDVP
LVLNHDVSRPLDALVPKLILLCVHQSEAIRAKSVQILNHLILGLPTALRD
HVDAFIRTLFSIAEDSSAQKCKEFMLASSKHHDELIAREACEFWILVARV
QGGKEVLRSYLPRLVPIILDNMVYSKDEVELYNELNKSDENVPDSEDDIR
PRFHQPRFVQSSATGMNGDIPAMNAELHWASENGSQAGPVSGNGFTSGSN
GSSTGGYDSDEDGGYESSDLDDFRDDSEWTLRKCSASSIDMFSHIFGEEL
LEYLLPRLEGKVADEAHWEQRECGILALGAIAQGCYHGMLPVLPRVASFL
FGLTGDQHNM
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mRNA from alignment at NODE_1080_length_14143_cov_5.034515:197..1800-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2327.t1 ID=Gcaud2327.t1|Name=Gcaud2327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1604bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:197..1800- (Gracilaria caudata M_176_S67 male)
ATGAATACCTCCCATCTTGCCCTGGCTTCAACAACAGCAACTTCCACAGA
TCACACCATGTGTTCGGCGCCATTGACCGCATCTAATGAACAACAGCAAA
CAATAGAATGGACTCCAGCTCCAGAAAAACTCCAAGCGATCGCCAACTTA
CTTCGAGAATCTACCTCAGCTTATACAAAGGTGCAACAGCATGTTTACGA
CCAACTACATCAGTACTCCTCTGTTCGTGATTTCAACAACTACTTAGTTT
ACATCCTAGCACATGGGTACAACAATTCTGAAGCTGCCTACCAACAAGTA
GACGCCGTAAGACAGGCAGCTGGATTGGTATTGAAGAATAACATTCGACC
TCTTTACAACACTTTACATCCTCACAGCAGGCAATATATCAATGCACATT
TACTCGCTGCAATAGGTGATAATTCGTACCAAATCAGGGCCGTAGCAGCT
ACATGTATTTCTACTATTGTCAAGTCTATGCAAGCATTAGTCGCCTACTC
TGGATTAACCACAACTCTCATTCAATCCATGGACTCTGATCGTCTCACGT
ACATAGAAGGCGCCCTTACAGTTCTTTCTGTTCTCGCTGAAGACGTCCCT
CTCGTTCTCAATCACGACGTTTCACGTCCGTTAGATGCGCTCGTTCCAAA
ACTAATCCTCTTATGCGTACACCAATCCGAAGCTATTCGAGCAAAATCGG
TTCAGATCTTGAATCACCTTATACTCGGTCTACCCACTGCTCTTCGCGAT
CACGTAGATGCTTTCATCCGAACTTTGTTCTCCATTGCAGAGGACTCCTC
GGCCCAAGTAAGGAAGAGAGTATGCACTTCCATTTGTTTACTGACAGAAG
CTACACCCCAATCTCTTGCCCCTTACCTCAGAAATGTAAGGAGTTCATGC
TAGCCTCAAGCAAACATCATGACGAACTTATCGCCCGCGAAGCATGTGAG
TTTTGGATTTTAGTGGCAAGGGTGCAAGGTGGTAAGGAGGTTCTTAGATC
GTATCTCCCAAGACTAGTGCCAATCATTCTTGACAATATGGTGTACTCAA
AAGATGAGGTCGAGTTGTACAATGAACTAAACAAATCGGATGAGAATGTG
CCAGATAGTGAGGATGATATCAGGCCTCGCTTTCATCAGCCCCGTTTTGT
TCAGTCCAGTGCAACTGGGATGAATGGGGATATCCCCGCCATGAATGCTG
AACTTCATTGGGCATCTGAAAACGGTAGTCAGGCGGGGCCTGTCAGTGGA
AATGGGTTTACAAGCGGTTCAAATGGATCAAGTACAGGTGGATATGACTC
TGATGAAGATGGAGGTTATGAGTCCTCAGATCTCGACGACTTTCGGGATG
ACTCTGAGTGGACTCTCAGGAAATGTTCTGCAAGTTCGATAGATATGTTT
TCACATATATTTGGAGAAGAACTCCTGGAATATCTCCTGCCCAGACTTGA
AGGCAAAGTAGCTGATGAGGCCCACTGGGAACAAAGAGAGTGTGGCATTC
TGGCGCTTGGGGCGATCGCACAGGGTTGTTATCACGGCATGCTACCCGTA
CTACCACGCGTTGCCTCGTTTCTCTTCGGCCTTACCGGAGATCAACATAA
TATG
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Coding sequence (CDS) from alignment at NODE_1080_length_14143_cov_5.034515:197..1800-

>Gcaud2327.t1 ID=Gcaud2327.t1|Name=Gcaud2327.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1530bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:197..1800- (Gracilaria caudata M_176_S67 male)
ATGAATACCTCCCATCTTGCCCTGGCTTCAACAACAGCAACTTCCACAGA
TCACACCATGTGTTCGGCGCCATTGACCGCATCTAATGAACAACAGCAAA
CAATAGAATGGACTCCAGCTCCAGAAAAACTCCAAGCGATCGCCAACTTA
CTTCGAGAATCTACCTCAGCTTATACAAAGGTGCAACAGCATGTTTACGA
CCAACTACATCAGTACTCCTCTGTTCGTGATTTCAACAACTACTTAGTTT
ACATCCTAGCACATGGGTACAACAATTCTGAAGCTGCCTACCAACAAGTA
GACGCCGTAAGACAGGCAGCTGGATTGGTATTGAAGAATAACATTCGACC
TCTTTACAACACTTTACATCCTCACAGCAGGCAATATATCAATGCACATT
TACTCGCTGCAATAGGTGATAATTCGTACCAAATCAGGGCCGTAGCAGCT
ACATGTATTTCTACTATTGTCAAGTCTATGCAAGCATTAGTCGCCTACTC
TGGATTAACCACAACTCTCATTCAATCCATGGACTCTGATCGTCTCACGT
ACATAGAAGGCGCCCTTACAGTTCTTTCTGTTCTCGCTGAAGACGTCCCT
CTCGTTCTCAATCACGACGTTTCACGTCCGTTAGATGCGCTCGTTCCAAA
ACTAATCCTCTTATGCGTACACCAATCCGAAGCTATTCGAGCAAAATCGG
TTCAGATCTTGAATCACCTTATACTCGGTCTACCCACTGCTCTTCGCGAT
CACGTAGATGCTTTCATCCGAACTTTGTTCTCCATTGCAGAGGACTCCTC
GGCCCAAAAATGTAAGGAGTTCATGCTAGCCTCAAGCAAACATCATGACG
AACTTATCGCCCGCGAAGCATGTGAGTTTTGGATTTTAGTGGCAAGGGTG
CAAGGTGGTAAGGAGGTTCTTAGATCGTATCTCCCAAGACTAGTGCCAAT
CATTCTTGACAATATGGTGTACTCAAAAGATGAGGTCGAGTTGTACAATG
AACTAAACAAATCGGATGAGAATGTGCCAGATAGTGAGGATGATATCAGG
CCTCGCTTTCATCAGCCCCGTTTTGTTCAGTCCAGTGCAACTGGGATGAA
TGGGGATATCCCCGCCATGAATGCTGAACTTCATTGGGCATCTGAAAACG
GTAGTCAGGCGGGGCCTGTCAGTGGAAATGGGTTTACAAGCGGTTCAAAT
GGATCAAGTACAGGTGGATATGACTCTGATGAAGATGGAGGTTATGAGTC
CTCAGATCTCGACGACTTTCGGGATGACTCTGAGTGGACTCTCAGGAAAT
GTTCTGCAAGTTCGATAGATATGTTTTCACATATATTTGGAGAAGAACTC
CTGGAATATCTCCTGCCCAGACTTGAAGGCAAAGTAGCTGATGAGGCCCA
CTGGGAACAAAGAGAGTGTGGCATTCTGGCGCTTGGGGCGATCGCACAGG
GTTGTTATCACGGCATGCTACCCGTACTACCACGCGTTGCCTCGTTTCTC
TTCGGCCTTACCGGAGATCAACATAATATG
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