Gcaud2317.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2317.t1
Unique Name	Gcaud2317.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_845_length_17097_cov_4.330472	contig	NODE_845_length_17097_cov_4.330472:13716..15482 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO44349
PFAMs	HH_signal,Hint
Max annot lvl	33208\|Metazoa
Evalue	2.99e-13
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota,38EJM@33154\|Opisthokonta,3BA86@33208\|Metazoa
Description	intein-mediated protein splicing
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2317	Gcaud2317	Gracilaria caudata M_176_S67 male	gene	NODE_845_length_17097_cov_4.330472 13716..15482 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2317.t1.stop1	Gcaud2317.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_845_length_17097_cov_4.330472 13716..13718 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2317.t1.CDS1	Gcaud2317.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_845_length_17097_cov_4.330472 13716..15482 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2317.t1.exon1	Gcaud2317.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_845_length_17097_cov_4.330472 13716..15482 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2317.t1.start1	Gcaud2317.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_845_length_17097_cov_4.330472 15480..15482 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2317.t1	Gcaud2317.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_845_length_17097_cov_4.330472 13716..15482 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_845_length_17097_cov_4.330472:13716..15482-
coding sequence from alignment at NODE_845_length_17097_cov_4.330472:13716..15482-

mRNA sequence

>Gcaud2317.t1 ID=Gcaud2317.t1|Name=Gcaud2317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=589bp
MRFFALFVIVAACHLVAADILWDTCEGEADFPEIKEGNFFNLCIQDHEFV
DEKWQWTLTKSTITNTVFDGCFFQNTVEKTSNFTEANWNSVTFKDCEFSS
FTENGMIFDKTVMNNVEFIGCTFHSNADVVFTEFTFNNVSFVDCDFQSDT
NFSLGQVNTMVVQDSRIKRSAAATTASGTDSFRMREMTVRDLTIKDSEFV
NPVRFEGVNGADFAINDTTFNQVYCHSLEETAPFQSDPEIKYFSGFNDTV
LAGVDFFDNVLCDMTSWHGMHFENVTFWTDATFANSDILDLYWNEVNMNS
RDGSQSELDFSKSFIKRRVLANTTIKGVANFKESIFEDVFVQNFNGDVPV
FEGAEFRQEYIDKTCCTLSCQTLKCMCNITEPSGTCPEGDSTVNLNILPT
CFPGSASVRRHDGAIIRMEDLAFAEKIAIGGGEHSDIYFFGHRSPDITAE
FVSIEHDASEKPLLISADHYLYVNGKLSTARIVKEGDMLRGANGKDTVTV
TATNREMHRGLYAPTSLHGDLLVDDIVVSSYTKALHPNLAHKMLYPVRLL
YRYAPPSVLNIFSVFHDQSWAGIARKLRLVEGTDVIEL*

spliced messenger RNA

>Gcaud2317.t1 ID=Gcaud2317.t1|Name=Gcaud2317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:13716..15482- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCTTCGCGCTATTTGTGATTGTGGCAGCCTGCCACTTGGTCGC
CGCGGATATTCTTTGGGATACGTGCGAGGGAGAAGCCGATTTTCCAGAAA
TCAAGGAAGGAAATTTTTTCAATCTCTGTATCCAAGACCACGAGTTTGTT
GATGAGAAATGGCAATGGACTCTTACAAAATCCACCATTACAAACACTGT
TTTCGATGGTTGCTTCTTTCAGAACACTGTCGAGAAGACTAGTAACTTCA
CAGAAGCGAATTGGAATTCCGTTACTTTCAAAGATTGCGAGTTTTCTAGC
TTCACTGAGAATGGAATGATCTTTGACAAAACCGTCATGAATAACGTTGA
GTTTATTGGGTGTACCTTTCATAGTAATGCCGATGTTGTTTTCACCGAGT
TCACGTTCAACAATGTGTCGTTTGTGGACTGCGACTTTCAGTCTGATACC
AACTTTTCGCTCGGTCAGGTCAATACTATGGTTGTTCAGGACTCCCGTAT
CAAGCGCTCTGCTGCCGCTACCACTGCATCTGGAACTGATTCATTTAGGA
TGAGGGAAATGACTGTTCGTGACTTGACTATCAAGGATTCGGAGTTCGTC
AATCCTGTGCGCTTTGAGGGTGTTAATGGAGCCGACTTTGCCATCAATGA
CACTACCTTCAATCAAGTGTATTGCCACAGTTTGGAGGAGACTGCTCCGT
TCCAAAGTGACCCCGAGATTAAGTACTTTAGCGGTTTTAACGACACTGTG
TTGGCAGGTGTTGATTTCTTTGATAATGTCCTCTGTGATATGACTTCTTG
GCATGGAATGCATTTTGAGAATGTCACCTTCTGGACCGATGCTACGTTTG
CCAATTCTGATATCCTTGACCTGTACTGGAACGAAGTGAATATGAACTCT
CGCGATGGATCACAGTCAGAGCTTGATTTCTCGAAGAGCTTCATTAAGCG
TCGTGTCTTGGCAAATACTACTATTAAGGGTGTGGCCAATTTCAAGGAAA
GTATATTTGAGGATGTCTTTGTGCAGAATTTCAACGGAGATGTTCCCGTT
TTCGAGGGAGCTGAGTTCAGGCAAGAATATATAGATAAGACTTGCTGCAC
ACTCTCGTGCCAGACGCTCAAATGTATGTGCAATATCACAGAGCCATCCG
GAACTTGTCCAGAGGGTGACTCTACTGTCAATCTTAACATCTTACCAACT
TGCTTCCCTGGGTCGGCTTCCGTGCGTCGTCATGATGGAGCTATTATCCG
TATGGAGGACCTTGCCTTTGCTGAGAAGATTGCAATCGGCGGTGGTGAGC
ATTCTGATATCTACTTCTTCGGCCATCGATCCCCGGATATTACTGCGGAA
TTCGTTTCCATTGAACATGATGCTTCGGAAAAGCCACTTCTTATCTCAGC
GGACCATTATCTTTATGTGAATGGGAAGCTAAGCACTGCACGAATAGTCA
AAGAGGGAGATATGCTCCGTGGGGCAAACGGCAAGGACACCGTGACGGTC
ACTGCTACAAACCGCGAAATGCATCGGGGATTATATGCACCAACATCCCT
CCACGGCGATTTGCTTGTGGACGACATTGTGGTTTCAAGTTACACAAAGG
CGTTGCATCCCAACCTCGCGCACAAGATGCTTTATCCAGTAAGACTGCTG
TATCGATACGCACCGCCTTCCGTGTTGAACATTTTCTCAGTGTTCCATGA
CCAAAGCTGGGCGGGTATCGCCCGCAAGTTGCGCCTGGTAGAGGGAACGG
ATGTCATCGAACTCTAG

protein sequence of Gcaud2317.t1

>Gcaud2317.t1 ID=Gcaud2317.t1|Name=Gcaud2317.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=589bp
MRFFALFVIVAACHLVAADILWDTCEGEADFPEIKEGNFFNLCIQDHEFV
DEKWQWTLTKSTITNTVFDGCFFQNTVEKTSNFTEANWNSVTFKDCEFSS
FTENGMIFDKTVMNNVEFIGCTFHSNADVVFTEFTFNNVSFVDCDFQSDT
NFSLGQVNTMVVQDSRIKRSAAATTASGTDSFRMREMTVRDLTIKDSEFV
NPVRFEGVNGADFAINDTTFNQVYCHSLEETAPFQSDPEIKYFSGFNDTV
LAGVDFFDNVLCDMTSWHGMHFENVTFWTDATFANSDILDLYWNEVNMNS
RDGSQSELDFSKSFIKRRVLANTTIKGVANFKESIFEDVFVQNFNGDVPV
FEGAEFRQEYIDKTCCTLSCQTLKCMCNITEPSGTCPEGDSTVNLNILPT
CFPGSASVRRHDGAIIRMEDLAFAEKIAIGGGEHSDIYFFGHRSPDITAE
FVSIEHDASEKPLLISADHYLYVNGKLSTARIVKEGDMLRGANGKDTVTV
TATNREMHRGLYAPTSLHGDLLVDDIVVSSYTKALHPNLAHKMLYPVRLL
YRYAPPSVLNIFSVFHDQSWAGIARKLRLVEGTDVIEL*

mRNA from alignment at NODE_845_length_17097_cov_4.330472:13716..15482-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2317.t1 ID=Gcaud2317.t1|Name=Gcaud2317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:13716..15482- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCTTCGCGCTATTTGTGATTGTGGCAGCCTGCCACTTGGTCGC
CGCGGATATTCTTTGGGATACGTGCGAGGGAGAAGCCGATTTTCCAGAAA
TCAAGGAAGGAAATTTTTTCAATCTCTGTATCCAAGACCACGAGTTTGTT
GATGAGAAATGGCAATGGACTCTTACAAAATCCACCATTACAAACACTGT
TTTCGATGGTTGCTTCTTTCAGAACACTGTCGAGAAGACTAGTAACTTCA
CAGAAGCGAATTGGAATTCCGTTACTTTCAAAGATTGCGAGTTTTCTAGC
TTCACTGAGAATGGAATGATCTTTGACAAAACCGTCATGAATAACGTTGA
GTTTATTGGGTGTACCTTTCATAGTAATGCCGATGTTGTTTTCACCGAGT
TCACGTTCAACAATGTGTCGTTTGTGGACTGCGACTTTCAGTCTGATACC
AACTTTTCGCTCGGTCAGGTCAATACTATGGTTGTTCAGGACTCCCGTAT
CAAGCGCTCTGCTGCCGCTACCACTGCATCTGGAACTGATTCATTTAGGA
TGAGGGAAATGACTGTTCGTGACTTGACTATCAAGGATTCGGAGTTCGTC
AATCCTGTGCGCTTTGAGGGTGTTAATGGAGCCGACTTTGCCATCAATGA
CACTACCTTCAATCAAGTGTATTGCCACAGTTTGGAGGAGACTGCTCCGT
TCCAAAGTGACCCCGAGATTAAGTACTTTAGCGGTTTTAACGACACTGTG
TTGGCAGGTGTTGATTTCTTTGATAATGTCCTCTGTGATATGACTTCTTG
GCATGGAATGCATTTTGAGAATGTCACCTTCTGGACCGATGCTACGTTTG
CCAATTCTGATATCCTTGACCTGTACTGGAACGAAGTGAATATGAACTCT
CGCGATGGATCACAGTCAGAGCTTGATTTCTCGAAGAGCTTCATTAAGCG
TCGTGTCTTGGCAAATACTACTATTAAGGGTGTGGCCAATTTCAAGGAAA
GTATATTTGAGGATGTCTTTGTGCAGAATTTCAACGGAGATGTTCCCGTT
TTCGAGGGAGCTGAGTTCAGGCAAGAATATATAGATAAGACTTGCTGCAC
ACTCTCGTGCCAGACGCTCAAATGTATGTGCAATATCACAGAGCCATCCG
GAACTTGTCCAGAGGGTGACTCTACTGTCAATCTTAACATCTTACCAACT
TGCTTCCCTGGGTCGGCTTCCGTGCGTCGTCATGATGGAGCTATTATCCG
TATGGAGGACCTTGCCTTTGCTGAGAAGATTGCAATCGGCGGTGGTGAGC
ATTCTGATATCTACTTCTTCGGCCATCGATCCCCGGATATTACTGCGGAA
TTCGTTTCCATTGAACATGATGCTTCGGAAAAGCCACTTCTTATCTCAGC
GGACCATTATCTTTATGTGAATGGGAAGCTAAGCACTGCACGAATAGTCA
AAGAGGGAGATATGCTCCGTGGGGCAAACGGCAAGGACACCGTGACGGTC
ACTGCTACAAACCGCGAAATGCATCGGGGATTATATGCACCAACATCCCT
CCACGGCGATTTGCTTGTGGACGACATTGTGGTTTCAAGTTACACAAAGG
CGTTGCATCCCAACCTCGCGCACAAGATGCTTTATCCAGTAAGACTGCTG
TATCGATACGCACCGCCTTCCGTGTTGAACATTTTCTCAGTGTTCCATGA
CCAAAGCTGGGCGGGTATCGCCCGCAAGTTGCGCCTGGTAGAGGGAACGG
ATGTCATCGAACTCTAG

Coding sequence (CDS) from alignment at NODE_845_length_17097_cov_4.330472:13716..15482-

>Gcaud2317.t1 ID=Gcaud2317.t1|Name=Gcaud2317.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1767bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:13716..15482- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCTTCGCGCTATTTGTGATTGTGGCAGCCTGCCACTTGGTCGC
CGCGGATATTCTTTGGGATACGTGCGAGGGAGAAGCCGATTTTCCAGAAA
TCAAGGAAGGAAATTTTTTCAATCTCTGTATCCAAGACCACGAGTTTGTT
GATGAGAAATGGCAATGGACTCTTACAAAATCCACCATTACAAACACTGT
TTTCGATGGTTGCTTCTTTCAGAACACTGTCGAGAAGACTAGTAACTTCA
CAGAAGCGAATTGGAATTCCGTTACTTTCAAAGATTGCGAGTTTTCTAGC
TTCACTGAGAATGGAATGATCTTTGACAAAACCGTCATGAATAACGTTGA
GTTTATTGGGTGTACCTTTCATAGTAATGCCGATGTTGTTTTCACCGAGT
TCACGTTCAACAATGTGTCGTTTGTGGACTGCGACTTTCAGTCTGATACC
AACTTTTCGCTCGGTCAGGTCAATACTATGGTTGTTCAGGACTCCCGTAT
CAAGCGCTCTGCTGCCGCTACCACTGCATCTGGAACTGATTCATTTAGGA
TGAGGGAAATGACTGTTCGTGACTTGACTATCAAGGATTCGGAGTTCGTC
AATCCTGTGCGCTTTGAGGGTGTTAATGGAGCCGACTTTGCCATCAATGA
CACTACCTTCAATCAAGTGTATTGCCACAGTTTGGAGGAGACTGCTCCGT
TCCAAAGTGACCCCGAGATTAAGTACTTTAGCGGTTTTAACGACACTGTG
TTGGCAGGTGTTGATTTCTTTGATAATGTCCTCTGTGATATGACTTCTTG
GCATGGAATGCATTTTGAGAATGTCACCTTCTGGACCGATGCTACGTTTG
CCAATTCTGATATCCTTGACCTGTACTGGAACGAAGTGAATATGAACTCT
CGCGATGGATCACAGTCAGAGCTTGATTTCTCGAAGAGCTTCATTAAGCG
TCGTGTCTTGGCAAATACTACTATTAAGGGTGTGGCCAATTTCAAGGAAA
GTATATTTGAGGATGTCTTTGTGCAGAATTTCAACGGAGATGTTCCCGTT
TTCGAGGGAGCTGAGTTCAGGCAAGAATATATAGATAAGACTTGCTGCAC
ACTCTCGTGCCAGACGCTCAAATGTATGTGCAATATCACAGAGCCATCCG
GAACTTGTCCAGAGGGTGACTCTACTGTCAATCTTAACATCTTACCAACT
TGCTTCCCTGGGTCGGCTTCCGTGCGTCGTCATGATGGAGCTATTATCCG
TATGGAGGACCTTGCCTTTGCTGAGAAGATTGCAATCGGCGGTGGTGAGC
ATTCTGATATCTACTTCTTCGGCCATCGATCCCCGGATATTACTGCGGAA
TTCGTTTCCATTGAACATGATGCTTCGGAAAAGCCACTTCTTATCTCAGC
GGACCATTATCTTTATGTGAATGGGAAGCTAAGCACTGCACGAATAGTCA
AAGAGGGAGATATGCTCCGTGGGGCAAACGGCAAGGACACCGTGACGGTC
ACTGCTACAAACCGCGAAATGCATCGGGGATTATATGCACCAACATCCCT
CCACGGCGATTTGCTTGTGGACGACATTGTGGTTTCAAGTTACACAAAGG
CGTTGCATCCCAACCTCGCGCACAAGATGCTTTATCCAGTAAGACTGCTG
TATCGATACGCACCGCCTTCCGTGTTGAACATTTTCTCAGTGTTCCATGA
CCAAAGCTGGGCGGGTATCGCCCGCAAGTTGCGCCTGGTAGAGGGAACGG
ATGTCATCGAACTCTAG