Gcaud2314.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2314.t1
Unique NameGcaud2314.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_845_length_17097_cov_4.330472contigNODE_845_length_17097_cov_4.330472:6641..7351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708389.1
PFAMsCyt-b5
Max annot lvl2759|Eukaryota
KEGG koko:K17278
Evalue5.21e-33
EggNOG OGsKOG1110@1|root,KOG1110@2759|Eukaryota
Descriptionsteroid binding
COG categoryCH
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2314Gcaud2314Gracilaria caudata M_176_S67 malegeneNODE_845_length_17097_cov_4.330472 6641..7351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2314.t1Gcaud2314.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_845_length_17097_cov_4.330472 6641..7351 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2314.t1.start1Gcaud2314.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_845_length_17097_cov_4.330472 6641..6643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2314.t1.CDS1Gcaud2314.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_845_length_17097_cov_4.330472 6641..6708 +
Gcaud2314.t1.CDS2Gcaud2314.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_845_length_17097_cov_4.330472 6838..7351 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2314.t1.exon1Gcaud2314.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_845_length_17097_cov_4.330472 6641..6708 +
Gcaud2314.t1.exon2Gcaud2314.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_845_length_17097_cov_4.330472 6838..7351 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2314.t1.intron1Gcaud2314.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_845_length_17097_cov_4.330472 6709..6837 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2314.t1.stop1Gcaud2314.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_845_length_17097_cov_4.330472 7349..7351 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2314.t1 ID=Gcaud2314.t1|Name=Gcaud2314.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=194bp
MDSSTLDDQIEVDNKALNSQNIASLSLAITAVSILCLLIIRRLMRKSIPN
DNQDMDVSDRQTTAERPVTESQLSKSNGEQGQPIFIAVKDPFSTKITVFD
VTSAKDFYGPGGPYHVFAGKNATYGLARSSIDPDTVTGDLSNLTESQKDT
HMQWHAKYSTKYPIVGYLVPDDSAANQETESTGTQDAETKKNA*
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spliced messenger RNA

>Gcaud2314.t1 ID=Gcaud2314.t1|Name=Gcaud2314.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:6641..7351+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCTCGACTCTGGACGACCAAATCGAGGTTGACAACAAGGCGCT
CAACAGCCAAAACATAGCAAGTCTATCTCTCGCTATTACCGCCGTGAGCA
TACTTTGTTTGCTAATCATAAGGCGGTTAATGAGGAAGAGCATTCCCAAC
GACAATCAAGACATGGACGTTTCAGATCGCCAAACCACTGCCGAAAGACC
GGTCACCGAATCACAACTTAGCAAATCCAATGGCGAACAAGGCCAACCCA
TCTTTATCGCAGTTAAGGATCCCTTCAGCACCAAGATCACCGTCTTTGAT
GTTACTTCTGCAAAAGATTTTTACGGCCCCGGAGGTCCTTACCACGTGTT
TGCTGGGAAAAATGCAACTTATGGGCTTGCAAGAAGCAGCATCGATCCGG
ATACGGTCACTGGCGATTTGTCCAATCTTACTGAAAGTCAGAAAGATACA
CATATGCAGTGGCATGCCAAGTATTCTACAAAATACCCAATAGTTGGGTA
TCTGGTTCCCGATGACAGCGCTGCAAATCAGGAGACGGAGTCTACCGGCA
CCCAGGATGCCGAAACAAAGAAGAACGCATAA
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protein sequence of Gcaud2314.t1

>Gcaud2314.t1 ID=Gcaud2314.t1|Name=Gcaud2314.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MDSSTLDDQIEVDNKALNSQNIASLSLAITAVSILCLLIIRRLMRKSIPN
DNQDMDVSDRQTTAERPVTESQLSKSNGEQGQPIFIAVKDPFSTKITVFD
VTSAKDFYGPGGPYHVFAGKNATYGLARSSIDPDTVTGDLSNLTESQKDT
HMQWHAKYSTKYPIVGYLVPDDSAANQETESTGTQDAETKKNA*
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mRNA from alignment at NODE_845_length_17097_cov_4.330472:6641..7351+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2314.t1 ID=Gcaud2314.t1|Name=Gcaud2314.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:6641..7351+ (Gracilaria caudata M_176_S67 male)
ATGGACAGCTCGACTCTGGACGACCAAATCGAGGTTGACAACAAGGCGCT
CAACAGCCAAAACATAGCGTACGTTACCCCATTAACGTAGCTTTGGATTC
CAAACTCGTTTACTCTCTTCGACCAAGTACTCATCTTGTAACCATTTATT
TCCCACATCTCCTGTTTTCACTGCAACGCTCGTTCGCCAACGCGCAGAAG
TCTATCTCTCGCTATTACCGCCGTGAGCATACTTTGTTTGCTAATCATAA
GGCGGTTAATGAGGAAGAGCATTCCCAACGACAATCAAGACATGGACGTT
TCAGATCGCCAAACCACTGCCGAAAGACCGGTCACCGAATCACAACTTAG
CAAATCCAATGGCGAACAAGGCCAACCCATCTTTATCGCAGTTAAGGATC
CCTTCAGCACCAAGATCACCGTCTTTGATGTTACTTCTGCAAAAGATTTT
TACGGCCCCGGAGGTCCTTACCACGTGTTTGCTGGGAAAAATGCAACTTA
TGGGCTTGCAAGAAGCAGCATCGATCCGGATACGGTCACTGGCGATTTGT
CCAATCTTACTGAAAGTCAGAAAGATACACATATGCAGTGGCATGCCAAG
TATTCTACAAAATACCCAATAGTTGGGTATCTGGTTCCCGATGACAGCGC
TGCAAATCAGGAGACGGAGTCTACCGGCACCCAGGATGCCGAAACAAAGA
AGAACGCATAA
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Coding sequence (CDS) from alignment at NODE_845_length_17097_cov_4.330472:6641..7351+

>Gcaud2314.t1 ID=Gcaud2314.t1|Name=Gcaud2314.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=582bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:6641..7351+ (Gracilaria caudata M_176_S67 male)
ATGGACAGCTCGACTCTGGACGACCAAATCGAGGTTGACAACAAGGCGCT
CAACAGCCAAAACATAGCAAGTCTATCTCTCGCTATTACCGCCGTGAGCA
TACTTTGTTTGCTAATCATAAGGCGGTTAATGAGGAAGAGCATTCCCAAC
GACAATCAAGACATGGACGTTTCAGATCGCCAAACCACTGCCGAAAGACC
GGTCACCGAATCACAACTTAGCAAATCCAATGGCGAACAAGGCCAACCCA
TCTTTATCGCAGTTAAGGATCCCTTCAGCACCAAGATCACCGTCTTTGAT
GTTACTTCTGCAAAAGATTTTTACGGCCCCGGAGGTCCTTACCACGTGTT
TGCTGGGAAAAATGCAACTTATGGGCTTGCAAGAAGCAGCATCGATCCGG
ATACGGTCACTGGCGATTTGTCCAATCTTACTGAAAGTCAGAAAGATACA
CATATGCAGTGGCATGCCAAGTATTCTACAAAATACCCAATAGTTGGGTA
TCTGGTTCCCGATGACAGCGCTGCAAATCAGGAGACGGAGTCTACCGGCA
CCCAGGATGCCGAAACAAAGAAGAACGCATAA
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