Gcaud2313.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2313.t1
Unique NameGcaud2313.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_845_length_17097_cov_4.330472contigNODE_845_length_17097_cov_4.330472:3970..4926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR341CT
Preferred nameSURF4
PFAMsSURF4
Max annot lvl2759|Eukaryota
KEGG koko:K14998,ko:K20369
KEGG TC3.D.4.8
GOsGO:0000139,GO:0000323,GO:0001775,GO:0002119,GO:0002164,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006887,GO:0006888,GO:0006890,GO:0006955,GO:0006996,GO:0007005,GO:0007030,GO:0007275,GO:0008150,GO:0008535,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010256,GO:0010604,GO:0010638,GO:0010646,GO:0010648,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0017004,GO:0019222,GO:0022607,GO:0023051,GO:0023057,GO:0030133,GO:0030134,GO:0030135,GO:0030141,GO:0030659,GO:0030667,GO:0030674,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0033043,GO:0033108,GO:0033617,GO:0034622,GO:0035577,GO:0036230,GO:0040027,GO:0040028,GO:0042058,GO:0042059,GO:0042119,GO:0042175,GO:0042176,GO:0042582,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045169,GO:0045321,GO:0045732,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060090,GO:0060255,GO:0061062,GO:0061064,GO:0065003,GO:0065007,GO:0071840,GO:0071944,GO:0080090,GO:0097020,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901184,GO:1901185,GO:1903362,GO:1903364,GO:2000026
Evalue8.25e-60
EggNOG OGsCOG2259@1|root,KOG3998@2759|Eukaryota
DescriptionCOPII adaptor activity
COG categoryM
BRITEko00000,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2313Gcaud2313Gracilaria caudata M_176_S67 malegeneNODE_845_length_17097_cov_4.330472 3970..4926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2313.t1Gcaud2313.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_845_length_17097_cov_4.330472 3970..4926 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2313.t1.stop1Gcaud2313.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_845_length_17097_cov_4.330472 3970..3972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2313.t1.CDS1Gcaud2313.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_845_length_17097_cov_4.330472 3970..4072 -
Gcaud2313.t1.CDS2Gcaud2313.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_845_length_17097_cov_4.330472 4151..4926 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2313.t1.exon1Gcaud2313.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_845_length_17097_cov_4.330472 3970..4072 -
Gcaud2313.t1.exon2Gcaud2313.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_845_length_17097_cov_4.330472 4151..4926 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2313.t1.intron1Gcaud2313.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_845_length_17097_cov_4.330472 4073..4150 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2313.t1.start1Gcaud2313.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_845_length_17097_cov_4.330472 4924..4926 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2313.t1 ID=Gcaud2313.t1|Name=Gcaud2313.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MEPSITTSVDYTSIPKVVRQNLSTLRKFRKTVAPYLPLICRVLLVSTFIE
DGIRVLFEMPHQIMFLRHEYYLPSFIAAIMLLSNIAISFIAIAVILAGKR
VARGMYENLAAYALIACVVYQQVLYGRHSPIGSGNVGFFIRNICLSGSLL
LITCQSRLAQGRSALPLGLLDGQTDKQTTVSYLQLASRIMLVLLGLEFLT
TLGVIGTLFALPVIFAVLLGFKLEISGLVLFFFYLVHNILNSAFWSVKGT
YVSQIMQYEFFQTLSIMGGLLLLIITGPGAISIDEMRSRKAF*
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spliced messenger RNA

>Gcaud2313.t1 ID=Gcaud2313.t1|Name=Gcaud2313.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:3970..4926- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCTTCCATTACTACCAGCGTTGACTATACCTCCATACCCAAGGT
CGTCCGTCAGAACCTGTCAACGCTTCGAAAGTTCAGAAAGACAGTAGCGC
CGTATCTACCACTTATCTGTCGGGTTCTTCTCGTATCGACCTTCATTGAG
GATGGAATTCGTGTGTTGTTCGAGATGCCCCATCAAATTATGTTCCTCCG
TCACGAATACTACCTGCCCTCCTTTATAGCCGCTATTATGTTACTTTCAA
ACATCGCCATCTCTTTCATCGCAATCGCCGTAATTCTTGCTGGAAAACGT
GTCGCTAGAGGTATGTACGAAAACCTTGCCGCCTATGCACTCATTGCGTG
TGTCGTCTATCAACAAGTTCTTTATGGCCGTCACTCTCCAATCGGTTCTG
GAAACGTTGGCTTCTTCATTCGTAATATTTGCTTGTCGGGAAGCTTATTG
CTTATTACATGCCAATCTAGATTGGCGCAAGGTCGTAGTGCATTGCCGCT
TGGCCTGTTGGATGGCCAAACCGATAAGCAGACTACTGTGTCTTATTTGC
AACTTGCTTCTCGCATCATGCTTGTTCTGTTGGGGCTGGAGTTTTTGACC
ACCTTGGGTGTCATTGGCACTCTTTTTGCATTGCCCGTCATCTTTGCAGT
CTTGTTGGGTTTCAAGCTTGAAATCAGCGGTCTCGTTCTTTTCTTCTTTT
ATCTAGTTCACAACATTCTCAACTCTGCATTCTGGTCAGTCAAGGGCACC
TATGTTTCCCAGATAATGCAATATGAATTCTTCCAAACCTTGTCCATTAT
GGGTGGACTCTTACTTCTAATCATCACTGGCCCGGGAGCCATTTCAATCG
ACGAAATGAGAAGTCGAAAGGCATTCTAA
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protein sequence of Gcaud2313.t1

>Gcaud2313.t1 ID=Gcaud2313.t1|Name=Gcaud2313.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MEPSITTSVDYTSIPKVVRQNLSTLRKFRKTVAPYLPLICRVLLVSTFIE
DGIRVLFEMPHQIMFLRHEYYLPSFIAAIMLLSNIAISFIAIAVILAGKR
VARGMYENLAAYALIACVVYQQVLYGRHSPIGSGNVGFFIRNICLSGSLL
LITCQSRLAQGRSALPLGLLDGQTDKQTTVSYLQLASRIMLVLLGLEFLT
TLGVIGTLFALPVIFAVLLGFKLEISGLVLFFFYLVHNILNSAFWSVKGT
YVSQIMQYEFFQTLSIMGGLLLLIITGPGAISIDEMRSRKAF*
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mRNA from alignment at NODE_845_length_17097_cov_4.330472:3970..4926-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2313.t1 ID=Gcaud2313.t1|Name=Gcaud2313.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=957bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:3970..4926- (Gracilaria caudata M_176_S67 male)
ATGGAGCCTTCCATTACTACCAGCGTTGACTATACCTCCATACCCAAGGT
CGTCCGTCAGAACCTGTCAACGCTTCGAAAGTTCAGAAAGACAGTAGCGC
CGTATCTACCACTTATCTGTCGGGTTCTTCTCGTATCGACCTTCATTGAG
GATGGAATTCGTGTGTTGTTCGAGATGCCCCATCAAATTATGTTCCTCCG
TCACGAATACTACCTGCCCTCCTTTATAGCCGCTATTATGTTACTTTCAA
ACATCGCCATCTCTTTCATCGCAATCGCCGTAATTCTTGCTGGAAAACGT
GTCGCTAGAGGTATGTACGAAAACCTTGCCGCCTATGCACTCATTGCGTG
TGTCGTCTATCAACAAGTTCTTTATGGCCGTCACTCTCCAATCGGTTCTG
GAAACGTTGGCTTCTTCATTCGTAATATTTGCTTGTCGGGAAGCTTATTG
CTTATTACATGCCAATCTAGATTGGCGCAAGGTCGTAGTGCATTGCCGCT
TGGCCTGTTGGATGGCCAAACCGATAAGCAGACTACTGTGTCTTATTTGC
AACTTGCTTCTCGCATCATGCTTGTTCTGTTGGGGCTGGAGTTTTTGACC
ACCTTGGGTGTCATTGGCACTCTTTTTGCATTGCCCGTCATCTTTGCAGT
CTTGTTGGGTTTCAAGCTTGAAATCAGCGGTCTCGTTCTTTTCTTCTTTT
ATCTAGTTCACAACATTCTCAACTCTGCATTCTGGTCAGTCAAGGGCACC
TATGTTTCCCAGATAATGCAATATGAGTAAGTTCTACCCCGTCATCGCCA
AATCCACGCCTATCACGATTATCTCACAGTTATCTCTAACTTTTCCGCTT
GAAGATTCTTCCAAACCTTGTCCATTATGGGTGGACTCTTACTTCTAATC
ATCACTGGCCCGGGAGCCATTTCAATCGACGAAATGAGAAGTCGAAAGGC
ATTCTAA
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Coding sequence (CDS) from alignment at NODE_845_length_17097_cov_4.330472:3970..4926-

>Gcaud2313.t1 ID=Gcaud2313.t1|Name=Gcaud2313.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:3970..4926- (Gracilaria caudata M_176_S67 male)
ATGGAGCCTTCCATTACTACCAGCGTTGACTATACCTCCATACCCAAGGT
CGTCCGTCAGAACCTGTCAACGCTTCGAAAGTTCAGAAAGACAGTAGCGC
CGTATCTACCACTTATCTGTCGGGTTCTTCTCGTATCGACCTTCATTGAG
GATGGAATTCGTGTGTTGTTCGAGATGCCCCATCAAATTATGTTCCTCCG
TCACGAATACTACCTGCCCTCCTTTATAGCCGCTATTATGTTACTTTCAA
ACATCGCCATCTCTTTCATCGCAATCGCCGTAATTCTTGCTGGAAAACGT
GTCGCTAGAGGTATGTACGAAAACCTTGCCGCCTATGCACTCATTGCGTG
TGTCGTCTATCAACAAGTTCTTTATGGCCGTCACTCTCCAATCGGTTCTG
GAAACGTTGGCTTCTTCATTCGTAATATTTGCTTGTCGGGAAGCTTATTG
CTTATTACATGCCAATCTAGATTGGCGCAAGGTCGTAGTGCATTGCCGCT
TGGCCTGTTGGATGGCCAAACCGATAAGCAGACTACTGTGTCTTATTTGC
AACTTGCTTCTCGCATCATGCTTGTTCTGTTGGGGCTGGAGTTTTTGACC
ACCTTGGGTGTCATTGGCACTCTTTTTGCATTGCCCGTCATCTTTGCAGT
CTTGTTGGGTTTCAAGCTTGAAATCAGCGGTCTCGTTCTTTTCTTCTTTT
ATCTAGTTCACAACATTCTCAACTCTGCATTCTGGTCAGTCAAGGGCACC
TATGTTTCCCAGATAATGCAATATGAATTCTTCCAAACCTTGTCCATTAT
GGGTGGACTCTTACTTCTAATCATCACTGGCCCGGGAGCCATTTCAATCG
ACGAAATGAGAAGTCGAAAGGCATTCTAA
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