Gcaud2312.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2312.t2
Unique Name	Gcaud2312.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_845_length_17097_cov_4.330472	contig	NODE_845_length_17097_cov_4.330472:2257..3684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10031420
PFAMs	Kelch_3,Kelch_4
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20285
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0010008,GO:0012505,GO:0016020,GO:0031090,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098588,GO:0098805
Evalue	2.71e-09
EggNOG OGs	KOG0379@1\|root,KOG0379@2759\|Eukaryota,37NTE@33090\|Viridiplantae,3GF5R@35493\|Streptophyta,4JKKV@91835\|fabids
Description	Kelch motif
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2312	Gcaud2312	Gracilaria caudata M_176_S67 male	gene	NODE_845_length_17097_cov_4.330472 2119..3684 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t2.start1	Gcaud2312.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_845_length_17097_cov_4.330472 2257..2259 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t2.CDS1	Gcaud2312.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_845_length_17097_cov_4.330472 2257..3684 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t2.exon1	Gcaud2312.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_845_length_17097_cov_4.330472 2257..3684 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t2.stop1	Gcaud2312.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_845_length_17097_cov_4.330472 3682..3684 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t2	Gcaud2312.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_845_length_17097_cov_4.330472 2257..3684 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_845_length_17097_cov_4.330472:2257..3684+
coding sequence from alignment at NODE_845_length_17097_cov_4.330472:2257..3684+

mRNA sequence

>Gcaud2312.t2 ID=Gcaud2312.t2|Name=Gcaud2312.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=476bp
MYALHVERREWKQISYGPGPKPHPRLLHTAVAISSTLMVVIGGDTWDSSD
SIEAKAAPTTALNDIWVFDYSDKSWMEIKNTGSTELPFLSCSSAVFGRAK
GQVPGVYIFGGYSRDKTNYNVVYRLRISDWKLEVLAHVEKDADGNKKLID
SDGDDYHLQGDDEYGKRVIPRDRESHGAIWLPGVGMLVVGGDGGVSILGD
CWLFCQHPDDPQSWRWKELRLVPAGNRPGNKLPRLAGHSLLALPTNTLKV
MVWGGILNTGQEVMASNVSYVIDLDKANIAQTIRVSNTGRAPKTGRILHG
FVRSRDMLFAFGGCDSEGNIQIGTQYGRLLPNFKAPNQAASFFGEEAMAM
AMRGTHPEKSCVDNKRPAQGEANRESSTGAARTPLTGEVLEVMDMGLLVS
ITIEGKPFKGVLVANEEGDDAVMIDVSDDKQKANGQKSKMRDRPSKRPKL
DAAAEALPDSPPKVRPKQTETIHLE*

spliced messenger RNA

>Gcaud2312.t2 ID=Gcaud2312.t2|Name=Gcaud2312.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:2257..3684+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGCTCTCCATGTCGAACGACGCGAATGGAAACAAATTAGTTATGG
ACCAGGCCCCAAACCGCATCCAAGATTGTTGCACACCGCAGTAGCCATAT
CTTCCACTTTGATGGTCGTCATCGGAGGTGATACATGGGATTCTTCTGAT
TCTATCGAGGCAAAGGCAGCTCCCACGACCGCGCTGAATGACATATGGGT
CTTCGATTATAGCGATAAGTCATGGATGGAAATCAAAAACACAGGCTCCA
CAGAACTACCGTTTCTTAGCTGTTCTTCGGCCGTTTTTGGACGGGCAAAG
GGTCAAGTTCCAGGGGTATACATTTTCGGCGGTTATAGCCGTGACAAAAC
GAACTACAACGTAGTGTACCGTTTAAGAATTAGTGATTGGAAGCTGGAAG
TTCTTGCACATGTGGAGAAGGATGCAGACGGAAATAAAAAGTTAATTGAC
AGTGATGGCGATGATTACCACTTGCAAGGAGATGATGAGTATGGTAAACG
AGTAATACCGAGGGATCGAGAGTCACACGGTGCAATATGGCTCCCTGGAG
TTGGTATGTTGGTCGTCGGAGGAGATGGGGGAGTATCAATTCTTGGAGAC
TGTTGGTTGTTTTGTCAACATCCAGATGACCCCCAATCTTGGAGATGGAA
AGAGTTGCGTCTTGTCCCCGCCGGGAATCGTCCCGGAAACAAACTCCCTC
GGTTGGCGGGACATTCTCTGCTCGCCCTACCAACGAACACGTTGAAAGTG
ATGGTGTGGGGAGGAATTCTAAACACGGGGCAAGAGGTTATGGCTTCTAA
TGTGTCGTATGTCATTGACCTTGACAAAGCAAACATTGCGCAGACCATTC
GAGTCTCAAATACTGGGAGGGCGCCAAAGACAGGGAGAATACTACATGGA
TTTGTACGGTCAAGGGACATGCTGTTTGCATTTGGCGGCTGTGATTCTGA
GGGAAACATACAGATTGGAACACAATATGGTCGACTGCTGCCCAACTTCA
AGGCGCCAAATCAAGCCGCGAGCTTTTTTGGGGAAGAGGCCATGGCAATG
GCAATGCGTGGCACACACCCTGAGAAGAGCTGTGTTGATAACAAGAGACC
GGCACAAGGCGAAGCAAACAGAGAGTCATCAACTGGCGCCGCTCGTACTC
CTCTAACAGGAGAGGTGTTGGAAGTTATGGACATGGGACTGCTGGTGTCC
ATTACAATCGAGGGAAAGCCATTTAAGGGAGTGCTGGTCGCCAACGAGGA
AGGCGATGATGCTGTGATGATCGACGTTTCTGACGATAAGCAAAAAGCAA
ACGGACAAAAGAGCAAGATGAGGGACAGGCCGAGCAAGCGACCTAAACTA
GATGCCGCCGCAGAAGCTCTTCCTGACTCACCGCCTAAGGTGCGACCTAA
ACAAACGGAAACGATTCATCTGGAGTAA

protein sequence of Gcaud2312.t2

>Gcaud2312.t2 ID=Gcaud2312.t2|Name=Gcaud2312.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=476bp
MYALHVERREWKQISYGPGPKPHPRLLHTAVAISSTLMVVIGGDTWDSSD
SIEAKAAPTTALNDIWVFDYSDKSWMEIKNTGSTELPFLSCSSAVFGRAK
GQVPGVYIFGGYSRDKTNYNVVYRLRISDWKLEVLAHVEKDADGNKKLID
SDGDDYHLQGDDEYGKRVIPRDRESHGAIWLPGVGMLVVGGDGGVSILGD
CWLFCQHPDDPQSWRWKELRLVPAGNRPGNKLPRLAGHSLLALPTNTLKV
MVWGGILNTGQEVMASNVSYVIDLDKANIAQTIRVSNTGRAPKTGRILHG
FVRSRDMLFAFGGCDSEGNIQIGTQYGRLLPNFKAPNQAASFFGEEAMAM
AMRGTHPEKSCVDNKRPAQGEANRESSTGAARTPLTGEVLEVMDMGLLVS
ITIEGKPFKGVLVANEEGDDAVMIDVSDDKQKANGQKSKMRDRPSKRPKL
DAAAEALPDSPPKVRPKQTETIHLE*

mRNA from alignment at NODE_845_length_17097_cov_4.330472:2257..3684+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2312.t2 ID=Gcaud2312.t2|Name=Gcaud2312.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:2257..3684+ (Gracilaria caudata M_176_S67 male)
ATGTATGCTCTCCATGTCGAACGACGCGAATGGAAACAAATTAGTTATGG
ACCAGGCCCCAAACCGCATCCAAGATTGTTGCACACCGCAGTAGCCATAT
CTTCCACTTTGATGGTCGTCATCGGAGGTGATACATGGGATTCTTCTGAT
TCTATCGAGGCAAAGGCAGCTCCCACGACCGCGCTGAATGACATATGGGT
CTTCGATTATAGCGATAAGTCATGGATGGAAATCAAAAACACAGGCTCCA
CAGAACTACCGTTTCTTAGCTGTTCTTCGGCCGTTTTTGGACGGGCAAAG
GGTCAAGTTCCAGGGGTATACATTTTCGGCGGTTATAGCCGTGACAAAAC
GAACTACAACGTAGTGTACCGTTTAAGAATTAGTGATTGGAAGCTGGAAG
TTCTTGCACATGTGGAGAAGGATGCAGACGGAAATAAAAAGTTAATTGAC
AGTGATGGCGATGATTACCACTTGCAAGGAGATGATGAGTATGGTAAACG
AGTAATACCGAGGGATCGAGAGTCACACGGTGCAATATGGCTCCCTGGAG
TTGGTATGTTGGTCGTCGGAGGAGATGGGGGAGTATCAATTCTTGGAGAC
TGTTGGTTGTTTTGTCAACATCCAGATGACCCCCAATCTTGGAGATGGAA
AGAGTTGCGTCTTGTCCCCGCCGGGAATCGTCCCGGAAACAAACTCCCTC
GGTTGGCGGGACATTCTCTGCTCGCCCTACCAACGAACACGTTGAAAGTG
ATGGTGTGGGGAGGAATTCTAAACACGGGGCAAGAGGTTATGGCTTCTAA
TGTGTCGTATGTCATTGACCTTGACAAAGCAAACATTGCGCAGACCATTC
GAGTCTCAAATACTGGGAGGGCGCCAAAGACAGGGAGAATACTACATGGA
TTTGTACGGTCAAGGGACATGCTGTTTGCATTTGGCGGCTGTGATTCTGA
GGGAAACATACAGATTGGAACACAATATGGTCGACTGCTGCCCAACTTCA
AGGCGCCAAATCAAGCCGCGAGCTTTTTTGGGGAAGAGGCCATGGCAATG
GCAATGCGTGGCACACACCCTGAGAAGAGCTGTGTTGATAACAAGAGACC
GGCACAAGGCGAAGCAAACAGAGAGTCATCAACTGGCGCCGCTCGTACTC
CTCTAACAGGAGAGGTGTTGGAAGTTATGGACATGGGACTGCTGGTGTCC
ATTACAATCGAGGGAAAGCCATTTAAGGGAGTGCTGGTCGCCAACGAGGA
AGGCGATGATGCTGTGATGATCGACGTTTCTGACGATAAGCAAAAAGCAA
ACGGACAAAAGAGCAAGATGAGGGACAGGCCGAGCAAGCGACCTAAACTA
GATGCCGCCGCAGAAGCTCTTCCTGACTCACCGCCTAAGGTGCGACCTAA
ACAAACGGAAACGATTCATCTGGAGTAA

Coding sequence (CDS) from alignment at NODE_845_length_17097_cov_4.330472:2257..3684+

>Gcaud2312.t2 ID=Gcaud2312.t2|Name=Gcaud2312.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1428bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:2257..3684+ (Gracilaria caudata M_176_S67 male)
ATGTATGCTCTCCATGTCGAACGACGCGAATGGAAACAAATTAGTTATGG
ACCAGGCCCCAAACCGCATCCAAGATTGTTGCACACCGCAGTAGCCATAT
CTTCCACTTTGATGGTCGTCATCGGAGGTGATACATGGGATTCTTCTGAT
TCTATCGAGGCAAAGGCAGCTCCCACGACCGCGCTGAATGACATATGGGT
CTTCGATTATAGCGATAAGTCATGGATGGAAATCAAAAACACAGGCTCCA
CAGAACTACCGTTTCTTAGCTGTTCTTCGGCCGTTTTTGGACGGGCAAAG
GGTCAAGTTCCAGGGGTATACATTTTCGGCGGTTATAGCCGTGACAAAAC
GAACTACAACGTAGTGTACCGTTTAAGAATTAGTGATTGGAAGCTGGAAG
TTCTTGCACATGTGGAGAAGGATGCAGACGGAAATAAAAAGTTAATTGAC
AGTGATGGCGATGATTACCACTTGCAAGGAGATGATGAGTATGGTAAACG
AGTAATACCGAGGGATCGAGAGTCACACGGTGCAATATGGCTCCCTGGAG
TTGGTATGTTGGTCGTCGGAGGAGATGGGGGAGTATCAATTCTTGGAGAC
TGTTGGTTGTTTTGTCAACATCCAGATGACCCCCAATCTTGGAGATGGAA
AGAGTTGCGTCTTGTCCCCGCCGGGAATCGTCCCGGAAACAAACTCCCTC
GGTTGGCGGGACATTCTCTGCTCGCCCTACCAACGAACACGTTGAAAGTG
ATGGTGTGGGGAGGAATTCTAAACACGGGGCAAGAGGTTATGGCTTCTAA
TGTGTCGTATGTCATTGACCTTGACAAAGCAAACATTGCGCAGACCATTC
GAGTCTCAAATACTGGGAGGGCGCCAAAGACAGGGAGAATACTACATGGA
TTTGTACGGTCAAGGGACATGCTGTTTGCATTTGGCGGCTGTGATTCTGA
GGGAAACATACAGATTGGAACACAATATGGTCGACTGCTGCCCAACTTCA
AGGCGCCAAATCAAGCCGCGAGCTTTTTTGGGGAAGAGGCCATGGCAATG
GCAATGCGTGGCACACACCCTGAGAAGAGCTGTGTTGATAACAAGAGACC
GGCACAAGGCGAAGCAAACAGAGAGTCATCAACTGGCGCCGCTCGTACTC
CTCTAACAGGAGAGGTGTTGGAAGTTATGGACATGGGACTGCTGGTGTCC
ATTACAATCGAGGGAAAGCCATTTAAGGGAGTGCTGGTCGCCAACGAGGA
AGGCGATGATGCTGTGATGATCGACGTTTCTGACGATAAGCAAAAAGCAA
ACGGACAAAAGAGCAAGATGAGGGACAGGCCGAGCAAGCGACCTAAACTA
GATGCCGCCGCAGAAGCTCTTCCTGACTCACCGCCTAAGGTGCGACCTAA
ACAAACGGAAACGATTCATCTGGAGTAA