Gcaud2303.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2303.t2
Unique Name	Gcaud2303.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	224

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_838_length_17196_cov_5.011166	contig	NODE_838_length_17196_cov_5.011166:2574..3245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704598.1
Preferred name	SPY
PFAMs	Glyco_transf_41,TPR_1,TPR_10,TPR_16,TPR_8
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10408
KEGG Pathway	ko05016,map05016
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0008194,GO:0008375,GO:0009719,GO:0009725,GO:0009735,GO:0009736,GO:0009739,GO:0009740,GO:0009755,GO:0009937,GO:0009938,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010476,GO:0010646,GO:0010648,GO:0016262,GO:0016740,GO:0016757,GO:0016758,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0031323,GO:0032870,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071368,GO:0071370,GO:0071396,GO:0071495,GO:0140096,GO:1901700,GO:1901701,GO:2000377
Evalue	3.78e-07
EggNOG OGs	COG3914@1\|root,KOG4626@2759\|Eukaryota
Description	protein N-acetylglucosaminyltransferase activity
COG category	O
BRITE	ko00000,ko00001,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2303	Gcaud2303	Gracilaria caudata M_176_S67 male	gene	NODE_838_length_17196_cov_5.011166 2574..3592 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2303.t2.start1	Gcaud2303.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_838_length_17196_cov_5.011166 2574..2576 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2303.t2.CDS1	Gcaud2303.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_838_length_17196_cov_5.011166 2574..3245 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2303.t2.exon1	Gcaud2303.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_838_length_17196_cov_5.011166 2574..3245 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2303.t2.stop1	Gcaud2303.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_838_length_17196_cov_5.011166 3243..3245 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2303.t2	Gcaud2303.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_838_length_17196_cov_5.011166 2574..3245 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_838_length_17196_cov_5.011166:2574..3245+
coding sequence from alignment at NODE_838_length_17196_cov_5.011166:2574..3245+

mRNA sequence

>Gcaud2303.t2 ID=Gcaud2303.t2|Name=Gcaud2303.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=224bp
MTATPLPVTSTRRTPSDSCDSSPRSPPARARPTVDALLSQAAFLCSRGRH
AAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALR
AAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEKSLPTQLA
ALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFAMQTHHTP
TRPKCSTSNVSSTIIRMWKPVAT*

spliced messenger RNA

>Gcaud2303.t2 ID=Gcaud2303.t2|Name=Gcaud2303.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=672bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2574..3245+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGACGCCACTCCCCGTCACCTCCACGCGCCGCACGCCGTCTGA
CTCGTGCGACTCGTCGCCCCGCTCACCGCCTGCGCGCGCCCGCCCCACCG
TCGACGCCTTGCTCTCGCAGGCCGCTTTTCTTTGTTCGCGCGGACGTCAT
GCCGCCGCCGAGCACGTCGTCATCACCGCTCTGTCGTTTCTGGCTTCTAC
CGATGCGCAGTACGCGCCGGCGCTCGTTCAACTCGCCGCCGTTCAACTGG
CTCATTCGCGAGTGATCGATGCCGAGCAGACGCTTCGACGCGCCCTGCGC
GCCGCCCCCGATTTTGTCCCCGCCCTGCAGTCTCTGGCCACCATTTTGTC
GAAGAACCCCGTGCACCTGCCTGAGGCTCTGCAGCTTTTGAGACATGCTT
TCAACCTCGCTCCTCCTTGTGAAGAGAAGTCCTTACCCACGCAGTTGGCC
GCATTGCTCACCGATGTGGGCGTGCGCTTGAAGATGGCAGGATTGCCGGC
TGATGCAGTCAAGCATTTTTCGGAGGCTCTGGAGGTGTGTCCGACATATG
CACAGGCCATGTATAACATGGCCTTCGCCATGCAGACACATCACACACCG
ACAAGGCCAAAATGTTCTACGAGTAATGTCTCCAGCACCATTATTCGCAT
GTGGAAGCCTGTTGCAACCTGA

protein sequence of Gcaud2303.t2

>Gcaud2303.t2 ID=Gcaud2303.t2|Name=Gcaud2303.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=224bp
MTATPLPVTSTRRTPSDSCDSSPRSPPARARPTVDALLSQAAFLCSRGRH
AAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALR
AAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEKSLPTQLA
ALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFAMQTHHTP
TRPKCSTSNVSSTIIRMWKPVAT*

mRNA from alignment at NODE_838_length_17196_cov_5.011166:2574..3245+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2303.t2 ID=Gcaud2303.t2|Name=Gcaud2303.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=672bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2574..3245+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGACGCCACTCCCCGTCACCTCCACGCGCCGCACGCCGTCTGA
CTCGTGCGACTCGTCGCCCCGCTCACCGCCTGCGCGCGCCCGCCCCACCG
TCGACGCCTTGCTCTCGCAGGCCGCTTTTCTTTGTTCGCGCGGACGTCAT
GCCGCCGCCGAGCACGTCGTCATCACCGCTCTGTCGTTTCTGGCTTCTAC
CGATGCGCAGTACGCGCCGGCGCTCGTTCAACTCGCCGCCGTTCAACTGG
CTCATTCGCGAGTGATCGATGCCGAGCAGACGCTTCGACGCGCCCTGCGC
GCCGCCCCCGATTTTGTCCCCGCCCTGCAGTCTCTGGCCACCATTTTGTC
GAAGAACCCCGTGCACCTGCCTGAGGCTCTGCAGCTTTTGAGACATGCTT
TCAACCTCGCTCCTCCTTGTGAAGAGAAGTCCTTACCCACGCAGTTGGCC
GCATTGCTCACCGATGTGGGCGTGCGCTTGAAGATGGCAGGATTGCCGGC
TGATGCAGTCAAGCATTTTTCGGAGGCTCTGGAGGTGTGTCCGACATATG
CACAGGCCATGTATAACATGGCCTTCGCCATGCAGACACATCACACACCG
ACAAGGCCAAAATGTTCTACGAGTAATGTCTCCAGCACCATTATTCGCAT
GTGGAAGCCTGTTGCAACCTGA

Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:2574..3245+

>Gcaud2303.t2 ID=Gcaud2303.t2|Name=Gcaud2303.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=672bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2574..3245+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGACGCCACTCCCCGTCACCTCCACGCGCCGCACGCCGTCTGA
CTCGTGCGACTCGTCGCCCCGCTCACCGCCTGCGCGCGCCCGCCCCACCG
TCGACGCCTTGCTCTCGCAGGCCGCTTTTCTTTGTTCGCGCGGACGTCAT
GCCGCCGCCGAGCACGTCGTCATCACCGCTCTGTCGTTTCTGGCTTCTAC
CGATGCGCAGTACGCGCCGGCGCTCGTTCAACTCGCCGCCGTTCAACTGG
CTCATTCGCGAGTGATCGATGCCGAGCAGACGCTTCGACGCGCCCTGCGC
GCCGCCCCCGATTTTGTCCCCGCCCTGCAGTCTCTGGCCACCATTTTGTC
GAAGAACCCCGTGCACCTGCCTGAGGCTCTGCAGCTTTTGAGACATGCTT
TCAACCTCGCTCCTCCTTGTGAAGAGAAGTCCTTACCCACGCAGTTGGCC
GCATTGCTCACCGATGTGGGCGTGCGCTTGAAGATGGCAGGATTGCCGGC
TGATGCAGTCAAGCATTTTTCGGAGGCTCTGGAGGTGTGTCCGACATATG
CACAGGCCATGTATAACATGGCCTTCGCCATGCAGACACATCACACACCG
ACAAGGCCAAAATGTTCTACGAGTAATGTCTCCAGCACCATTATTCGCAT
GTGGAAGCCTGTTGCAACCTGA