Gcaud2303.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2303.t1
Unique NameGcaud2303.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:2574..3592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4565.Traes_6DS_13DC96057.2
Preferred nameSPY
PFAMsGlyco_transf_41,TPR_1,TPR_10,TPR_16,TPR_7,TPR_8
Max annot lvl35493|Streptophyta
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0008194,GO:0008375,GO:0009719,GO:0009725,GO:0009735,GO:0009736,GO:0009739,GO:0009740,GO:0009755,GO:0009937,GO:0009938,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010476,GO:0010646,GO:0010648,GO:0016262,GO:0016740,GO:0016757,GO:0016758,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0031323,GO:0032870,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071368,GO:0071370,GO:0071396,GO:0071495,GO:0140096,GO:1901700,GO:1901701,GO:2000377
Evalue2.75e-11
EggNOG OGsCOG3914@1|root,KOG4626@2759|Eukaryota,37IV9@33090|Viridiplantae,3G9DX@35493|Streptophyta,3KPD8@4447|Liliopsida,3I3SN@38820|Poales
Descriptiongibberellic acid mediated signaling pathway
COG categoryGOT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2303Gcaud2303Gracilaria caudata M_176_S67 malegeneNODE_838_length_17196_cov_5.011166 2574..3592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t1Gcaud2303.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_838_length_17196_cov_5.011166 2574..3592 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t1.start1Gcaud2303.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_838_length_17196_cov_5.011166 2574..2576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t1.CDS1Gcaud2303.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 2574..3195 +
Gcaud2303.t1.CDS2Gcaud2303.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 3276..3592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t1.exon1Gcaud2303.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 2574..3195 +
Gcaud2303.t1.exon2Gcaud2303.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 3276..3592 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t1.intron1Gcaud2303.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_838_length_17196_cov_5.011166 3196..3275 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t1.stop1Gcaud2303.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_838_length_17196_cov_5.011166 3590..3592 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2303.t1 ID=Gcaud2303.t1|Name=Gcaud2303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp
MTATPLPVTSTRRTPSDSCDSSPRSPPARARPTVDALLSQAAFLCSRGRH
AAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALR
AAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEKSLPTQLA
ALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFAMQTHHTP
TRPKCSTSLAIRAYEKALFCNPNYELAKSNLAVALCEKSTAIKQADPKLA
KKLYKRALALQSCSFDARYNLGVLYAETGKLERALLSYNRAVQFNPCLTE
AYNNLGVVHKEL*
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spliced messenger RNA

>Gcaud2303.t1 ID=Gcaud2303.t1|Name=Gcaud2303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2574..3592+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGACGCCACTCCCCGTCACCTCCACGCGCCGCACGCCGTCTGA
CTCGTGCGACTCGTCGCCCCGCTCACCGCCTGCGCGCGCCCGCCCCACCG
TCGACGCCTTGCTCTCGCAGGCCGCTTTTCTTTGTTCGCGCGGACGTCAT
GCCGCCGCCGAGCACGTCGTCATCACCGCTCTGTCGTTTCTGGCTTCTAC
CGATGCGCAGTACGCGCCGGCGCTCGTTCAACTCGCCGCCGTTCAACTGG
CTCATTCGCGAGTGATCGATGCCGAGCAGACGCTTCGACGCGCCCTGCGC
GCCGCCCCCGATTTTGTCCCCGCCCTGCAGTCTCTGGCCACCATTTTGTC
GAAGAACCCCGTGCACCTGCCTGAGGCTCTGCAGCTTTTGAGACATGCTT
TCAACCTCGCTCCTCCTTGTGAAGAGAAGTCCTTACCCACGCAGTTGGCC
GCATTGCTCACCGATGTGGGCGTGCGCTTGAAGATGGCAGGATTGCCGGC
TGATGCAGTCAAGCATTTTTCGGAGGCTCTGGAGGTGTGTCCGACATATG
CACAGGCCATGTATAACATGGCCTTCGCCATGCAGACACATCACACACCG
ACAAGGCCAAAATGTTCTACGAGTCTGGCTATTCGCGCCTACGAAAAAGC
GCTCTTTTGCAATCCGAACTACGAACTGGCCAAAAGCAACCTCGCTGTCG
CTCTCTGCGAAAAGAGTACTGCAATCAAGCAAGCCGACCCCAAATTGGCG
AAGAAGCTCTACAAGCGAGCCCTTGCTCTCCAGTCTTGCTCTTTCGACGC
TCGTTACAATCTTGGCGTACTCTACGCCGAAACTGGAAAGCTTGAGCGCG
CTCTACTTTCGTACAATCGTGCTGTTCAATTTAACCCATGTCTAACTGAG
GCTTACAATAATCTAGGAGTAGTGCACAAGGAACTTTGA
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protein sequence of Gcaud2303.t1

>Gcaud2303.t1 ID=Gcaud2303.t1|Name=Gcaud2303.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MTATPLPVTSTRRTPSDSCDSSPRSPPARARPTVDALLSQAAFLCSRGRH
AAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALR
AAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEKSLPTQLA
ALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFAMQTHHTP
TRPKCSTSLAIRAYEKALFCNPNYELAKSNLAVALCEKSTAIKQADPKLA
KKLYKRALALQSCSFDARYNLGVLYAETGKLERALLSYNRAVQFNPCLTE
AYNNLGVVHKEL*
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mRNA from alignment at NODE_838_length_17196_cov_5.011166:2574..3592+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2303.t1 ID=Gcaud2303.t1|Name=Gcaud2303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1019bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2574..3592+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGACGCCACTCCCCGTCACCTCCACGCGCCGCACGCCGTCTGA
CTCGTGCGACTCGTCGCCCCGCTCACCGCCTGCGCGCGCCCGCCCCACCG
TCGACGCCTTGCTCTCGCAGGCCGCTTTTCTTTGTTCGCGCGGACGTCAT
GCCGCCGCCGAGCACGTCGTCATCACCGCTCTGTCGTTTCTGGCTTCTAC
CGATGCGCAGTACGCGCCGGCGCTCGTTCAACTCGCCGCCGTTCAACTGG
CTCATTCGCGAGTGATCGATGCCGAGCAGACGCTTCGACGCGCCCTGCGC
GCCGCCCCCGATTTTGTCCCCGCCCTGCAGTCTCTGGCCACCATTTTGTC
GAAGAACCCCGTGCACCTGCCTGAGGCTCTGCAGCTTTTGAGACATGCTT
TCAACCTCGCTCCTCCTTGTGAAGAGAAGTCCTTACCCACGCAGTTGGCC
GCATTGCTCACCGATGTGGGCGTGCGCTTGAAGATGGCAGGATTGCCGGC
TGATGCAGTCAAGCATTTTTCGGAGGCTCTGGAGGTGTGTCCGACATATG
CACAGGCCATGTATAACATGGCCTTCGCCATGCAGACACATCACACACCG
ACAAGGCCAAAATGTTCTACGAGTAATGTCTCCAGCACCATTATTCGCAT
GTGGAAGCCTGTTGCAACCTGAGAGTGTTGCACAAAAACGATGGAAATGC
AGGTCTGGCTATTCGCGCCTACGAAAAAGCGCTCTTTTGCAATCCGAACT
ACGAACTGGCCAAAAGCAACCTCGCTGTCGCTCTCTGCGAAAAGAGTACT
GCAATCAAGCAAGCCGACCCCAAATTGGCGAAGAAGCTCTACAAGCGAGC
CCTTGCTCTCCAGTCTTGCTCTTTCGACGCTCGTTACAATCTTGGCGTAC
TCTACGCCGAAACTGGAAAGCTTGAGCGCGCTCTACTTTCGTACAATCGT
GCTGTTCAATTTAACCCATGTCTAACTGAGGCTTACAATAATCTAGGAGT
AGTGCACAAGGAACTTTGA
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Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:2574..3592+

>Gcaud2303.t1 ID=Gcaud2303.t1|Name=Gcaud2303.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=939bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2574..3592+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGACGCCACTCCCCGTCACCTCCACGCGCCGCACGCCGTCTGA
CTCGTGCGACTCGTCGCCCCGCTCACCGCCTGCGCGCGCCCGCCCCACCG
TCGACGCCTTGCTCTCGCAGGCCGCTTTTCTTTGTTCGCGCGGACGTCAT
GCCGCCGCCGAGCACGTCGTCATCACCGCTCTGTCGTTTCTGGCTTCTAC
CGATGCGCAGTACGCGCCGGCGCTCGTTCAACTCGCCGCCGTTCAACTGG
CTCATTCGCGAGTGATCGATGCCGAGCAGACGCTTCGACGCGCCCTGCGC
GCCGCCCCCGATTTTGTCCCCGCCCTGCAGTCTCTGGCCACCATTTTGTC
GAAGAACCCCGTGCACCTGCCTGAGGCTCTGCAGCTTTTGAGACATGCTT
TCAACCTCGCTCCTCCTTGTGAAGAGAAGTCCTTACCCACGCAGTTGGCC
GCATTGCTCACCGATGTGGGCGTGCGCTTGAAGATGGCAGGATTGCCGGC
TGATGCAGTCAAGCATTTTTCGGAGGCTCTGGAGGTGTGTCCGACATATG
CACAGGCCATGTATAACATGGCCTTCGCCATGCAGACACATCACACACCG
ACAAGGCCAAAATGTTCTACGAGTCTGGCTATTCGCGCCTACGAAAAAGC
GCTCTTTTGCAATCCGAACTACGAACTGGCCAAAAGCAACCTCGCTGTCG
CTCTCTGCGAAAAGAGTACTGCAATCAAGCAAGCCGACCCCAAATTGGCG
AAGAAGCTCTACAAGCGAGCCCTTGCTCTCCAGTCTTGCTCTTTCGACGC
TCGTTACAATCTTGGCGTACTCTACGCCGAAACTGGAAAGCTTGAGCGCG
CTCTACTTTCGTACAATCGTGCTGTTCAATTTAACCCATGTCTAACTGAG
GCTTACAATAATCTAGGAGTAGTGCACAAGGAACTTTGA
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